mRNA_H-paniculata_contig23526.6354.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23526.6354.1
Unique NamemRNA_H-paniculata_contig23526.6354.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23526.6354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23526contigH-paniculata_contig23526:36..1042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size341
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23526.6354.1prot_H-paniculata_contig23526.6354.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23526 36..1042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.7023363-CDS-H-paniculata_contig23526:35..1261622929668.7023363-CDS-H-paniculata_contig23526:35..126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23526 36..126 -
1691480959.4498184-CDS-H-paniculata_contig23526:35..1261691480959.4498184-CDS-H-paniculata_contig23526:35..126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23526 36..126 -
1622929668.7193818-CDS-H-paniculata_contig23526:414..5331622929668.7193818-CDS-H-paniculata_contig23526:414..533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23526 415..533 -
1691480959.4602778-CDS-H-paniculata_contig23526:414..5331691480959.4602778-CDS-H-paniculata_contig23526:414..533Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23526 415..533 -
1622929668.7366595-CDS-H-paniculata_contig23526:913..10421622929668.7366595-CDS-H-paniculata_contig23526:913..1042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23526 914..1042 -
1691480959.4701662-CDS-H-paniculata_contig23526:913..10421691480959.4701662-CDS-H-paniculata_contig23526:913..1042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23526 914..1042 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23526.6354.1

>prot_H-paniculata_contig23526.6354.1 ID=prot_H-paniculata_contig23526.6354.1|Name=mRNA_H-paniculata_contig23526.6354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
METALDRARKVEVFVASSDGAREEVARRAETAFLAAYKEGKFKESSSPAN
EVLIRHGILPDRVPVDTMPAKIKAMVAAEVERRFLLYIPRKANRTVPMNA
IFLSGGSSRSSPR
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mRNA from alignment at H-paniculata_contig23526:36..1042-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23526.6354.1 ID=mRNA_H-paniculata_contig23526.6354.1|Name=mRNA_H-paniculata_contig23526.6354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1007bp|location=Sequence derived from alignment at H-paniculata_contig23526:36..1042- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGAGGTCTTCGTGGCTTC
TTCTGATGGTGCGCGAGAAGAGGTTGCAAGGCGAGCAGAAACGGCTTTCT
TGGCGGCTTACAAGGAGGGGAAATTCAAGGTCAGTACAGAGTCGGAGATT
GTCCAAGGTTTGGTGTGTTGTGTGCGACAGTCGTCAACATCTACAAGTAA
ATGTGTTGCGCAAGCACTATCACTATCTGTAGTACCAAATAGCTGAGCCA
GTTATGAAAACTTTGTCAACGCCGATTGACAGAGATGCCTTAGTAGTAGT
GGCACCCGAAGAAAGCCACTTAAGGCTTGGACAATCGAATGCATTAATGA
ACGGAAGCCGAATTGTTCAGTTGACATTGATGCGTGTTGAGAAGCTGTTT
TGTTCGCGCTGCCGTTTCTTGATGATGCAGACACTTTTTATTATATTGTG
TATAATACATACGTTGACTACTATGTAATATATCCCCCCATGCTCCCCTT
GTCATACAGGAATCATCATCCCCGGCCAATGAGGTTCTCATTCGTCATGG
TATTCTACCGGATAGGGTCCCAGTTGATACAATGCCTGCCAAAATTAAAG
CAATGGTGGCAGCAGAAGTGGAAAGACGATGCGCCACTTTGAAGGCTCAG
AGACAGGCAGAGATCAACGATGGTTCGAACACTTACGAGCTTAATGAAGA
AGAAAAACACGAGGCCCAAGACATAGTAGCACACAAAATCAATGAGACCG
TCACCCTGAGCTTTGGCTATACCCTCGCCTCTAGCGGGTCATGAGAGGAG
GACGTAAGCAGGCGCTCAATACTGTATTTTGTCTAGATTTCAGATCCACA
GTACAACAAGTAATCAGCAAGGCTTATGTGTCCTTATCGTAAGTAGTGGA
GATGTATGTTGGACTTGTTCCTTCTCTACATTCCAAGGAAGGCGAATCGT
ACAGTCCCAATGAACGCGATCTTCCTGTCTGGGGGCTCTTCAAGATCTTC
ACCTCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig23526:36..1042-

>mRNA_H-paniculata_contig23526.6354.1 ID=mRNA_H-paniculata_contig23526.6354.1|Name=mRNA_H-paniculata_contig23526.6354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig23526:36..1042- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGACGGCGCTTGATCGTGCGAGGAAGGTTGAGGTCTTCGTGGCTTC
TTCTGATGGTGCGCGAGAAGAGGTTGCAAGGCGAGCAGAAACGGCTTTCT
TGGCGGCTTACAAGGAGGGGAAATTCAAGATGGAGACGGCGCTTGATCGT
GCGAGGAAGGTTGAGGTCTTCGTGGCTTCTTCTGATGGTGCGCGAGAAGA
GGTTGCAAGGCGAGCAGAAACGGCTTTCTTGGCGGCTTACAAGGAGGGGA
AATTCAAGGAATCATCATCCCCGGCCAATGAGGTTCTCATTCGTCATGGT
ATTCTACCGGATAGGGTCCCAGTTGATACAATGCCTGCCAAAATTAAAGC
AATGGTGGCAGCAGAAGTGGAAAGACGGAATCATCATCCCCGGCCAATGA
GGTTCTCATTCGTCATGGTATTCTACCGGATAGGGTCCCAGTTGATACAA
TGCCTGCCAAAATTAAAGCAATGGTGGCAGCAGAAGTGGAAAGACGGTTC
CTTCTCTACATTCCAAGGAAGGCGAATCGTACAGTCCCAATGAACGCGAT
CTTCCTGTCTGGGGGCTCTTCAAGATCTTCACCTCGCGTTCCTTCTCTAC
ATTCCAAGGAAGGCGAATCGTACAGTCCCAATGAACGCGATCTTCCTGTC
TGGGGGCTCTTCAAGATCTTCACCTCGC
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