prot_H-paniculata_contig2352.6351.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2352.6351.1
Unique Nameprot_H-paniculata_contig2352.6351.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length60
Homology
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BLAST of mRNA_H-paniculata_contig2352.6351.1 vs. uniprot
Match: D8LAU9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAU9_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.830e-8
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 0 
Query:    2 ATTDKAFAGIGAVLAATFCFYIYVFLTGGISDGATRFQ--GMPTTLD--PPPVAPYVD-DLSV 59
            ATT++AFAG+ A+L A+  F +YV+++GGI++G+TRFQ  G PTT D  P P  P  D DL V
Sbjct:  233 ATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTYDALPLPATPPTDSDLVV 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2352.6351.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAU9_ECTSI4.830e-852.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..59
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2352contigH-paniculata_contig2352:79..4129 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2352.6351.1mRNA_H-paniculata_contig2352.6351.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2352 2..4170 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2352.6351.1 ID=prot_H-paniculata_contig2352.6351.1|Name=mRNA_H-paniculata_contig2352.6351.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MATTDKAFAGIGAVLAATFCFYIYVFLTGGISDGATRFQGMPTTLDPPPV
APYVDDLSV*
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