mRNA_H-paniculata_contig2352.6351.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2352.6351.1
Unique NamemRNA_H-paniculata_contig2352.6351.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2352.6351.1 vs. uniprot
Match: D8LAU9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAU9_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.830e-12
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 3 
Query:   12 IREKEQDAVDMATTDKAFAGIGAVLAATFCFYIYVFLTGGISDGATRFQ--GMPTTLD--PPPVAPYVD-DLSV 218
            IR KEQ+AV+ ATT++AFAG+ A+L A+  F +YV+++GGI++G+TRFQ  G PTT D  P P  P  D DL V
Sbjct:  222 IRRKEQEAVNFATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTYDALPLPATPPTDSDLVV 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2352.6351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAU9_ECTSI1.830e-1254.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2352contigH-paniculata_contig2352:2..4170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006320.1
Exons3
Model size298
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2352.6351.1prot_H-paniculata_contig2352.6351.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2352 79..4129 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.325647-UTR-H-paniculata_contig2352:1..781622929668.325647-UTR-H-paniculata_contig2352:1..78Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2352 2..78 -
1691480959.2811635-UTR-H-paniculata_contig2352:1..781691480959.2811635-UTR-H-paniculata_contig2352:1..78Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2352 2..78 -
1622929668.395869-UTR-H-paniculata_contig2352:4129..41701622929668.395869-UTR-H-paniculata_contig2352:4129..4170Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2352 4130..4170 -
1691480959.317129-UTR-H-paniculata_contig2352:4129..41701691480959.317129-UTR-H-paniculata_contig2352:4129..4170Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2352 4130..4170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.3426719-CDS-H-paniculata_contig2352:78..1301622929668.3426719-CDS-H-paniculata_contig2352:78..130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2352 79..130 -
1691480959.2904053-CDS-H-paniculata_contig2352:78..1301691480959.2904053-CDS-H-paniculata_contig2352:78..130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2352 79..130 -
1622929668.3597167-CDS-H-paniculata_contig2352:2015..21251622929668.3597167-CDS-H-paniculata_contig2352:2015..2125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2352 2016..2125 -
1691480959.2984514-CDS-H-paniculata_contig2352:2015..21251691480959.2984514-CDS-H-paniculata_contig2352:2015..2125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2352 2016..2125 -
1622929668.3804393-CDS-H-paniculata_contig2352:4111..41291622929668.3804393-CDS-H-paniculata_contig2352:4111..4129Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2352 4112..4129 -
1691480959.3076823-CDS-H-paniculata_contig2352:4111..41291691480959.3076823-CDS-H-paniculata_contig2352:4111..4129Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2352 4112..4129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2352.6351.1

>prot_H-paniculata_contig2352.6351.1 ID=prot_H-paniculata_contig2352.6351.1|Name=mRNA_H-paniculata_contig2352.6351.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MATTDKAFAGIGAVLAATFCFYIYVFLTGGISDGATRFQGMPTTLDPPPV
APYVDDLSV*
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mRNA from alignment at H-paniculata_contig2352:2..4170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2352.6351.1 ID=mRNA_H-paniculata_contig2352.6351.1|Name=mRNA_H-paniculata_contig2352.6351.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4169bp|location=Sequence derived from alignment at H-paniculata_contig2352:2..4170- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAGGGACAAGATACGCGAGAAAGAGCAAGATGCCGTTGATATGGCCACG
ACTGATAAGGTGTGTCCGGCAGGGTAACACGGTATTGGTTTGAACATGAA
GTCCGAGTCGAGCGTTGAAGTTGTCCTATGCTCAAGGAACGACAAAAACA
GTAGCATACTCCGCAAGGGAATCAAGAACAAGTGCACCATCTGTACATCA
TTTGTTCTGTCTGTATTGCAGGGGTGAAGCCGTCGCGCGTGATGGTTTCA
CTCGTTGGAGACAGTTTGATTGCGTACTGTAGACCAAAGCTTGTTTTCGA
CTGAAATAAGCACTGCAAGGATGGAGCGAACTGCGAAGCGAAGTGGATTG
GGACTGAACCATGCACATGATAACACGTACGTAAGTACATATAATGTCTA
TCATGAGATACCGCTGAAAGGTTGGGTTTGTAGGGTGAACAGTCGGATAA
GACCAACAGTAAGGAGTAAAGGCAAGCTATTTTCGTTCTCAGTTGTCATC
CAAAGGTTGGCCTTGGGCAGGCGGGCAGCAGTGCTCTCCACCATATAATA
CTGCGGCAGCCAACGTGAATGATGACGCCATCCCGATGTACTCATCCCGA
TATGCTTGTTACCTGAAATATGCTTGGTGCGGTCGGGGTGCAGTTCTTAT
TAGTGTCTTCGAAATTGCCTAAGATGTGAACACCGAAATACGAAAGCATA
AGCAGATTCCAAATCGTTGGAAGAACTGTTTGATAGACACGAGGGTGGAC
ATTAGCTATCCGCACCGAACCGGCCGTAGGCCTTTCGTCGAGCCTCCTAG
AGGGCATGAAGTTTCGTGCTAAACCGTTTTTTTAGTGTTGAACAGCAATT
AAAAATAACATGATACCGATTGCAAATAATTGGTTCACTATACGTTGCAA
CCTGCAATAGCTCTCAGTACGACTATGTTTCAACTACAGTCATCCTGCAC
GCGGCAAATATTCGCCACCCTCGACTTTGGGTCATTCAGCGGCTGCAGCG
CCGTCTATTTCGGTGCCCCTCAATCTCAAATCGACGACAAATCGACAATC
CCCAAATGGTGTTTCGGCGCTTGGCAAGGAAAAGGCCTGGAATCGGCTGA
GCGTACATGAGTTCCCGTTCCTGAAACGCTCTGGTGAAGGCTCTGAACCG
CGAAATCGATGAAAAAACGTTCCCGAGATTATTGACGACCCTGTGTTGGC
AGCAGCAGTGGGTTTGCAGCTCGCGTGGTAAAGTAGCTGCTGATCCCTCG
CCGCCACTCGCTACGCTATCAGGCAGCATGACATGCGCAGTTTTGATACC
TTTTGTCTCTCATGCGCAAAGATGCCCTGCTGCTTTTGCTGCTTCCCTTA
TATGTATCGCCAGCTACAAAACAAAGTTGTTATTGCTGTACTTGACCTTT
TATCCACTTCAACGCCAAGCGTTTGCCATACCTACGGTTCCCAGGTCATG
TTGCACGTTGACTCTAATGAAAATATATACCAACAATAGAAATGACCGCC
ACGTTGGCACTGAAGGGGGTCCAGACCTTGTTCCGGCTGCTAATGATCGG
GACTTTTGACAATCCCGTCATTAAAACTTGTGTTCACACAATCTGCCCGA
TTGGGTCCCAATCCGCAAACTCCAGAACTTGCTCCTCCACGATGTTTTAG
TTTGTCCTTTACAGACACTCGTGAGAATTGACCCTTCCAAAAGGAAAAAT
TCGGGATTTTTTCGGCAGGGGTTTGCAAGGCTGTTTGTCGGGAGTAGGAC
CCTCAACTGTTTCAGTGGCCTCGAACATTTTTTTTGGCGGCAGGCGGTCG
ATGTGCCATATATCCTTGATGAATCCGCGGAAAGGGCACTTTCGGTCCAA
TAATCGGCTGGCCCGCTGGTTTTTGGAGCGTCATTTTCGGCCCTGAAGAG
CCAAGTAGTGCACATTACTTGTGACTGCACTGCGCTCTCTTGCTCTCTGT
TGGTTTGGTCGCCTCATCCTTGCGCTTGTTGTGCTACAACCGTGTTTTTT
TTTGCCTTGGCTCATCGGCTTGTGCTTTGTTTAATGTTTATCCAGGCGTT
TGCGGGGATAGGCGCCGTTTTGGCCGCGACGTTTTGCTTCTACATTTACG
TATTTTTGACTGGGGGGATTTCGGATGGAGCGACGCGGTTCCAGGGCATG
CCCACGTGAGTTGTAGGCGTCACGCTTGTAATGGCTATATGACAGTCGAA
TTGTTCAGGTTGATGCCCTACCAGCACTTCCTCTATACACTCCCTTCAGC
GCCGGGCTGCCTCTCCTACCTTTTGCCCTGGTTCAACACATCTTCGCACG
TATGAACGCGGCCTCTACTCCCGTGTGTGTGCTACGTATCGACGACGACA
TCGATGACTAAAGAGTGCATCACGAAATTGGAAAAACGTTTACTGGAGTG
TGTATTTTTTTGGGTCTCCAACTCTCTCTCTCTCCCATTCTCTCTCGCTC
TCTCCTTGCACGAAAACGATACTTCCTCCCATGGACGTTTATCTCTGTTG
ACGTATCCCGCCATGTGGCTGTGGTCCTGTCGTTTTCCTTCAAGTACCGT
CGAAGGTCCCTATTAAGGCGCATGCCCACCTTAAGACGTAGGTGCGCCTT
GATAGGGGCACTTATTGATGTCCATAAAAACCATGCTGTAATGAACACGA
AAGGTCGCCGGTCGAAATACTTTGTTAGTAGCAGGTAGGACCCGCTGTCC
TGCTGTGCAAAAAACAACCCGATGAGATGCCTACAGTCTGGTGCGCAGCA
CACTTGACTGGAAGCAATGCTTGCGTAGCAGGAAGGGGAGGAAAGCAAAT
CCCCATCCCTTGGCCCCAGGGCACCAATAAGTACACCTCGCATAATTACC
ACGGAGGCTGCACCGGCTACCGGCATCATGTGCGAAAAATTCGAAATTCT
GGAGGTTACGTTAGACGGTGCAGGATTGAGGGGGCGGTTGCAGGGCTTCG
CAGGGTCAAGATAAGTTTTATCCAAGCACACGCACTCTCTTTGCCCCTCA
AACCAGACTGATGTGTGGTCTTTTTTCCGCAGGATATCTTCTTGAAACTC
TTGATGTGAGAGTTTTTGGAATCATTTTTTGTTTCTTGTTTTTTTTTGCG
GTTTCGCTTCGTGGGGGGTTGTTTGGGGTCAATTCCTGGGAATTTTTCGG
CTCATACCAGTACCGTACAGTGTTTTTACGATAGTGCTGCATTTTACTCA
TACGACGTGTTAGTGAGTATTCGAGTATTATTCAGCGAAGGTTTGTTTCT
TTGCTCTCAGTGGAGGCTAGGTGTGGTTGAGTTTTCCTCTTGGGGTCATG
TTCGCAGCCTTTCTTGCCGGTTTCTCCTTAATATTGATTAAGGCTGCGCT
TGGTTCGGTTATGCCGTGGTGTGTGACGTTGCGGTTGGAAGCAGACAATG
CTACCGATATCACGACTACTAAATTTGTGTACATTATCGGTGTCCTTTTT
GAGGCGATCAAGAAGCACCAATACATCCCATCTAATCTTCATCGATCGTG
TGGGTACTTCTTACAGGTCTTGAGAGAGGGGAAATATTGCCCCTTACAAG
GCGCGTGCGCTGTAAATGGGGCCATTTCCCTTTCAAGGCGTATGCTCAAT
TTTAAGGTGCATCGATTGTCCCCGCACTACTTCACCTTGAAAGCGGTCAT
GGATTGTATGCGCTTCTGTACGAAGTAGAGTATTTCTGTCTGTGCTGTCT
TGTGCACTTGACTGATTACCATGTATGAGCTAGCTGTATGGTATAAGAGT
TCCGAGACGACCATTACTTTAGCCTATTATATTATGAGCATTATAACTCT
CATTTTGCTGGTGAGCGTACCTACTCTAGATGTTCTATTTGTGTAAGTCA
AACAACCTCACCCTGTGAAAATATTCTGACTCAACAAAAAGCAGGTAAGT
TAGTCAGCAAGAGTCTCCAAGTGACATCACGTGGGACGTACATATGCTAT
TGAGGTCATGGTGTCTATGCTCGGTATACATACATGTTAACAACCCCCCC
GTCCCCCTGTCTCGCCGCTTGATCACTGAAAATCTGACAGGACCCTCGAT
CCCCCACCCGTGGCTCCGTACGTCGACGATCTTTCGGTGTAACCTCTTGG
CATCCACGGACCTACGCCCGAACGGGTAGGGTAGCTCGTGAACTGAGCAT
GACTGGAAGTCTAGTCAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2352:2..4170-

>mRNA_H-paniculata_contig2352.6351.1 ID=mRNA_H-paniculata_contig2352.6351.1|Name=mRNA_H-paniculata_contig2352.6351.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig2352:2..4170- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCACGACTGATAAGATGGCCACGACTGATAAGGCGTTTGCGGGGAT
AGGCGCCGTTTTGGCCGCGACGTTTTGCTTCTACATTTACGTATTTTTGA
CTGGGGGGATTTCGGATGGAGCGACGCGGTTCCAGGGCATGCCCACGCGT
TTGCGGGGATAGGCGCCGTTTTGGCCGCGACGTTTTGCTTCTACATTTAC
GTATTTTTGACTGGGGGGATTTCGGATGGAGCGACGCGGTTCCAGGGCAT
GCCCACGACCCTCGATCCCCCACCCGTGGCTCCGTACGTCGACGATCTTT
CGGTGTAAGACCCTCGATCCCCCACCCGTGGCTCCGTACGTCGACGATCT
TTCGGTGTAA
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