mRNA_H-paniculata_contig10980.635.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10980.635.1
Unique NamemRNA_H-paniculata_contig10980.635.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10980.635.1 vs. uniprot
Match: D7FU33_ECTSI (Metallophos domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU33_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 5.170e-19
Identity = 67/165 (40.61%), Postives = 83/165 (50.30%), Query Frame = 1 
Query:    1 RDRWRRSGSKPKTHKIAPPSRAVQIKWSPGGEAESPLSCITLNTDMFGEAL-SPRVARFTRAETAAYLQKWILAAAKHGVVPRELQTLLPDEFLREGLDYPDMSDTSLMGDEGDVETGECGALDSPGSDSGGARGAGSTAVPWV-----DSTPGASWRTYGWRRF 477
            RD + R     ++ ++APP+R V I + PG  A + L CIT NTD++G AL S   A  TR ETAAYL++W+L A KHGV+PREL+ LL DE   +    P        G E    TG  G         GG  G G T          DS    SW  YGW RF
Sbjct:  442 RDAFSRVALDERSREMAPPNRNVTITFDPG--ASTLLGCITANTDVYGPALCSDTAATLTREETAAYLERWVLIAVKHGVLPRELRALLQDEGHGQRGGTPGYYSVREEGRETAASTGTVGEDGGGPYRVGGRSGTGGTGSSSPHGLGGDSVTSVSWTKYGWNRF 604
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BLAST of mRNA_H-paniculata_contig10980.635.1 vs. uniprot
Match: A0A6H5L3E7_9PHAE (Metallophos domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3E7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.170e-18
Identity = 66/165 (40.00%), Postives = 83/165 (50.30%), Query Frame = 1 
Query:    1 RDRWRRSGSKPKTHKIAPPSRAVQIKWSPGGEAESPLSCITLNTDMFGEAL-SPRVARFTRAETAAYLQKWILAAAKHGVVPRELQTLLPDEFLREGLDYPDMSDTSLMGDEGDVETGECGALDSPGSDSGGARGAGSTAVPWVDSTPG-----ASWRTYGWRRF 477
            RD + R     ++ ++APP+R V I + PG  A + L CIT NTD++G AL S   A  TR ETAAYL++W+L A KHGV+PREL+ LL DE   +    P        G E    +G  G         GG  G G T         G     ASW  YGW RF
Sbjct:  612 RDAFSRVALDERSKEMAPPNRNVTITFDPG--ASTLLGCITANTDVYGPALCSDTAATLTREETAAYLERWVLIAVKHGVLPRELRALLQDEGHDQRGGTPGYYSVREEGRENAAASGTVGEDGGGPYRVGGRSGIGGTGSSSPHGLGGGGVTSASWTKYGWNRF 774
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10980.635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU33_ECTSI5.170e-1940.61Metallophos domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5L3E7_9PHAE6.170e-1840.00Metallophos domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10980contigH-paniculata_contig10980:7135..7773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue3.7e-18
Seed eggNOG ortholog2880.D7FU33
KEGG rclassRC00002
KEGG koko:K01525,ko:K22132
KEGG ReactionR00125
KEGG Pathwayko00230,map00230
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0031090,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805,GO:0098852
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0639@1,KOG0371@2759
EC3.6.1.41
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Exons1
Model size639
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.7454906-CDS-H-paniculata_contig10980:7134..77731622928804.7454906-CDS-H-paniculata_contig10980:7134..7773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10980 7135..7773 +
1691480626.5096505-CDS-H-paniculata_contig10980:7134..77731691480626.5096505-CDS-H-paniculata_contig10980:7134..7773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10980 7135..7773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10980.635.1prot_H-paniculata_contig10980.635.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10980 7135..7773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10980.635.1

>prot_H-paniculata_contig10980.635.1 ID=prot_H-paniculata_contig10980.635.1|Name=mRNA_H-paniculata_contig10980.635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
RDRWRRSGSKPKTHKIAPPSRAVQIKWSPGGEAESPLSCITLNTDMFGEA
LSPRVARFTRAETAAYLQKWILAAAKHGVVPRELQTLLPDEFLREGLDYP
DMSDTSLMGDEGDVETGECGALDSPGSDSGGARGAGSTAVPWVDSTPGAS
WRTYGWRRFHGSGSSSSSSKDEAGDHCTGKEHDEEAGGGSGDADDDEEAE
ELEMENMAEALVG
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mRNA from alignment at H-paniculata_contig10980:7135..7773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10980.635.1 ID=mRNA_H-paniculata_contig10980.635.1|Name=mRNA_H-paniculata_contig10980.635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=639bp|location=Sequence derived from alignment at H-paniculata_contig10980:7135..7773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGACCGATGGAGACGATCGGGTTCGAAACCTAAAACCCACAAAATCGC
CCCTCCGTCCAGAGCCGTCCAGATCAAGTGGTCCCCCGGGGGGGAGGCCG
AAAGCCCTCTATCGTGCATCACGCTCAACACGGACATGTTCGGCGAGGCT
CTGTCCCCGCGTGTGGCTCGTTTCACCAGAGCAGAGACAGCCGCATACCT
GCAAAAGTGGATACTCGCCGCCGCGAAGCATGGGGTAGTACCTCGAGAGC
TGCAGACCCTTCTTCCCGACGAGTTTCTCCGAGAAGGGTTGGACTATCCG
GACATGAGTGACACGAGCTTGATGGGAGACGAAGGCGATGTCGAGACGGG
GGAGTGCGGAGCGTTGGACTCTCCCGGCTCCGATTCTGGCGGGGCACGGG
GGGCTGGTAGCACGGCGGTACCCTGGGTGGATAGCACCCCAGGGGCATCC
TGGCGTACGTACGGGTGGAGGCGTTTTCATGGGTCTGGATCATCGTCGTC
GTCGTCGAAGGACGAGGCGGGCGACCACTGCACTGGGAAAGAGCATGACG
AGGAAGCCGGTGGTGGCAGTGGTGATGCTGATGATGACGAGGAAGCTGAG
GAGCTGGAGATGGAAAACATGGCGGAAGCTTTGGTTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10980:7135..7773+

>mRNA_H-paniculata_contig10980.635.1 ID=mRNA_H-paniculata_contig10980.635.1|Name=mRNA_H-paniculata_contig10980.635.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig10980:7135..7773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGACCGATGGAGACGATCGGGTTCGAAACCTAAAACCCACAAAATCGC
CCCTCCGTCCAGAGCCGTCCAGATCAAGTGGTCCCCCGGGGGGGAGGCCG
AAAGCCCTCTATCGTGCATCACGCTCAACACGGACATGTTCGGCGAGGCT
CTGTCCCCGCGTGTGGCTCGTTTCACCAGAGCAGAGACAGCCGCATACCT
GCAAAAGTGGATACTCGCCGCCGCGAAGCATGGGGTAGTACCTCGAGAGC
TGCAGACCCTTCTTCCCGACGAGTTTCTCCGAGAAGGGTTGGACTATCCG
GACATGAGTGACACGAGCTTGATGGGAGACGAAGGCGATGTCGAGACGGG
GGAGTGCGGAGCGTTGGACTCTCCCGGCTCCGATTCTGGCGGGGCACGGG
GGGCTGGTAGCACGGCGGTACCCTGGGTGGATAGCACCCCAGGGGCATCC
TGGCGTACGTACGGGTGGAGGCGTTTTCATGGGTCTGGATCATCGTCGTC
GTCGTCGAAGGACGAGGCGGGCGACCACTGCACTGGGAAAGAGCATGACG
AGGAAGCCGGTGGTGGCAGTGGTGATGCTGATGATGACGAGGAAGCTGAG
GAGCTGGAGATGGAAAACATGGCGGAAGCTTTGGTTGGGAGAGACCGATG
GAGACGATCGGGTTCGAAACCTAAAACCCACAAAATCGCCCCTCCGTCCA
GAGCCGTCCAGATCAAGTGGTCCCCCGGGGGGGAGGCCGAAAGCCCTCTA
TCGTGCATCACGCTCAACACGGACATGTTCGGCGAGGCTCTGTCCCCGCG
TGTGGCTCGTTTCACCAGAGCAGAGACAGCCGCATACCTGCAAAAGTGGA
TACTCGCCGCCGCGAAGCATGGGGTAGTACCTCGAGAGCTGCAGACCCTT
CTTCCCGACGAGTTTCTCCGAGAAGGGTTGGACTATCCGGACATGAGTGA
CACGAGCTTGATGGGAGACGAAGGCGATGTCGAGACGGGGGAGTGCGGAG
CGTTGGACTCTCCCGGCTCCGATTCTGGCGGGGCACGGGGGGCTGGTAGC
ACGGCGGTACCCTGGGTGGATAGCACCCCAGGGGCATCCTGGCGTACGTA
CGGGTGGAGGCGTTTTCATGGGTCTGGATCATCGTCGTCGTCGTCGAAGG
ACGAGGCGGGCGACCACTGCACTGGGAAAGAGCATGACGAGGAAGCCGGT
GGTGGCAGTGGTGATGCTGATGATGACGAGGAAGCTGAGGAGCTGGAGAT
GGAAAACATGGCGGAAGCTTTGGTTGGG
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