mRNA_H-paniculata_contig23515.6350.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23515.6350.1
Unique NamemRNA_H-paniculata_contig23515.6350.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig23515.6350.1 vs. uniprot
Match: D8LKK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKK6_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 8.770e-19
Identity = 52/81 (64.20%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:   25 TPKKKGGLEINQANVVDVLRLHGGRLSTKLVLSKFVAALKVNGKANK-AALERLGEHLKKVATKVDDAIDGKMWVLKQHFS 264
            T +KKG  EINQANVV  L+ +GGRL++K +L  FVAALK +GK NK AA+  L   LKKVATKVDDAI+G +WVLK+HFS
Sbjct:  367 TAQKKGAQEINQANVVATLKRYGGRLASKALLGHFVAALKADGKKNKEAAVANLRAILKKVATKVDDAIEGTVWVLKKHFS 447
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23515.6350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKK6_ECTSI8.770e-1964.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23515contigH-paniculata_contig23515:1824..3600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size853
Cds size267
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23515.6350.1prot_H-paniculata_contig23515.6350.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23515 2409..3600 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.173022-UTR-H-paniculata_contig23515:1823..24081622929668.173022-UTR-H-paniculata_contig23515:1823..2408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23515 1824..2408 -
1691480959.2007222-UTR-H-paniculata_contig23515:1823..24081691480959.2007222-UTR-H-paniculata_contig23515:1823..2408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23515 1824..2408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.191759-CDS-H-paniculata_contig23515:2408..24741622929668.191759-CDS-H-paniculata_contig23515:2408..2474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23515 2409..2474 -
1691480959.2110422-CDS-H-paniculata_contig23515:2408..24741691480959.2110422-CDS-H-paniculata_contig23515:2408..2474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23515 2409..2474 -
1622929668.2044673-CDS-H-paniculata_contig23515:2890..29801622929668.2044673-CDS-H-paniculata_contig23515:2890..2980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23515 2891..2980 -
1691480959.2210383-CDS-H-paniculata_contig23515:2890..29801691480959.2210383-CDS-H-paniculata_contig23515:2890..2980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23515 2891..2980 -
1622929668.2237067-CDS-H-paniculata_contig23515:3489..36001622929668.2237067-CDS-H-paniculata_contig23515:3489..3600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23515 3490..3600 -
1691480959.2335-CDS-H-paniculata_contig23515:3489..36001691480959.2335-CDS-H-paniculata_contig23515:3489..3600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23515 3490..3600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23515.6350.1

>prot_H-paniculata_contig23515.6350.1 ID=prot_H-paniculata_contig23515.6350.1|Name=mRNA_H-paniculata_contig23515.6350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
EVKRAKKSTPKKKGGLEINQANVVDVLRLHGGRLSTKLVLSKFVAALKVN
GKANKAALERLGEHLKKVATKVDDAIDGKMWVLKQHFS*
back to top

mRNA from alignment at H-paniculata_contig23515:1824..3600-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23515.6350.1 ID=mRNA_H-paniculata_contig23515.6350.1|Name=mRNA_H-paniculata_contig23515.6350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1777bp|location=Sequence derived from alignment at H-paniculata_contig23515:1824..3600- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTGAAACGCGCGAAGAAATCCACACCGAAGAAGAAGGGTGGGCTGGA
GATAAACCAGGCTAACGTTGTGGATGTGTTGAGACTGCACGGGGGTCGTT
TGTCCACCAAGGTATGTTGGTTGGTTGGTTGTGTGTGTGTGTGTGTGTGT
GTTTTTATGTATTTTTTTTCATGTAATGCGAATGTTTTTGTTTTTTTTGA
CAGGTTGGAACAAGCTTTCAAATCGTGTTCGGAATCGAACACTAGATGAT
TCATATGTGTTACAAACCTAAAGAAACCTCCTTGTTGATTAAATTTTGTT
GATCTGTGTACAGTATACAAGTGGAGATTGAAGTCAGCTACATAACATTA
ACATGGGTACAATGGGGTTGTAATAGTAGTATGAGCTTTTAGATTTAGAG
TACAACTGACTGTGTGGTAGGGTGATTTCAGTTAGCAAAATGGAGGGTTG
TTTTCAAGTTTTATGGTTGTGAAGTCGTTCATACGAGAGGACTATTTCAG
GTTTCACCTACAGTATACTACACGCACGTGCCAGTGATACAGTGATGCCG
TTGCTGTCATGTACGCCTAACAATGGAACTCTTTGCTTCGCTGTACTTTG
CTGTGCTTGGTGCTGTGCAGTTGGTGCTGTCGAAATTTGTGGCTGCGTTG
AAAGTGAACGGCAAGGCGAACAAGGCCGCCCTCGAACGCTTGGGGGAGCA
CCTCAAGAAGGTACTTAACTGGGCATGTTGATAGCACGAAACTGTACGGG
CGTAGCCGAGGTCATAGTCTAGTGTATTCGTAATGGTTTTCAAGCTATCT
ATCATGACCTTGACTTAATTTTACAAAACAAAACATAAAAAAGAAGGCAG
GTTTTTTATTTGGTCCCTCCACCATGCCGAAAGACTAACACCGGTATTTT
TTATTTGTTATGTTATGTTATGTTCTGTCCCACGTTAGTTGCAATCATCG
TAGTCTACCCGCCGTATCATACAAAGTTTGTGTAGATTAGGCTGTCCTTT
TCTTGGTCTCTGGTATGTCGTCCATGTGTGCTATTGCTAATTTGGGGATA
TTGTGATCTGTCCCATTATAGCTGTTATGGCGGGGTGTTGTTGTTGTTGT
TGTTGTTGTTGTTTTGTTTTATGCAGGTGGCCACAAAGGTAGACGATGCT
ATCGACGGCAAGATGTGGGTGCTGAAGCAGCACTTCAGCTGAAAGAAAAG
GACACATCTTGGAGGATAATAGATTCTACATAGGGAAGGAAGCAGCGAGA
AGGCACATTCTGGAAAGCGGAGCACCAAAGACAGAAGACCGCAGCTGAAA
GCACGATCAAATAAATGCTTTGGTTCGGTTAAGGTTCGGTTACAGTTACG
ATATCGGTTACGGCTTCGGTTGGGTTCGGTTCGGTTGGGTTCGGTTGGGT
TCGGTTCGGCTCGGCTCGGCTCGGCTCGGCTCGGTTCGGTTCCTGAACTT
TCTCTGTCATTTGGTGGAGTTTTGAAGTGTCACACGGTGCCACTGACTGC
ATTGGTGCGTTTTCTGGTGCAATTTTGGGAGAGGGGGATATGTACCTACC
TTACTTTGACTGTATTGTGTTGGTGTGCATGCTGCGGTTGAGTTACTGCC
GTTAGGTTGGGGCGTGTACGGGTGAGGATTTTAGAGTATTCACAGCGCAC
AACGCTTGTTCTGTAGTCATAGTGGATAGTTCTGCAGCGCTGCGTTGTGA
TGTTGGTGGGAATCAGACCTTGTTTGGCCTTCAGAGATAAATTGAACGGA
AATTACAATGGATAGGCCCTTTTCTTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23515:1824..3600-

>mRNA_H-paniculata_contig23515.6350.1 ID=mRNA_H-paniculata_contig23515.6350.1|Name=mRNA_H-paniculata_contig23515.6350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig23515:1824..3600- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTGAAACGCGCGAAGAAATCCACACCGAAGAAGAAGGGTGGGCTGGA
GATAAACCAGGCTAACGTTGTGGATGTGTTGAGACTGCACGGGGGTCGTT
TGTCCACCAAGGAAGTGAAACGCGCGAAGAAATCCACACCGAAGAAGAAG
GGTGGGCTGGAGATAAACCAGGCTAACGTTGTGGATGTGTTGAGACTGCA
CGGGGGTCGTTTGTCCACCAAGTTGGTGCTGTCGAAATTTGTGGCTGCGT
TGAAAGTGAACGGCAAGGCGAACAAGGCCGCCCTCGAACGCTTGGGGGAG
CACCTCAAGAAGTTGGTGCTGTCGAAATTTGTGGCTGCGTTGAAAGTGAA
CGGCAAGGCGAACAAGGCCGCCCTCGAACGCTTGGGGGAGCACCTCAAGA
AGGTGGCCACAAAGGTAGACGATGCTATCGACGGCAAGATGTGGGTGCTG
AAGCAGCACTTCAGCTGAGTGGCCACAAAGGTAGACGATGCTATCGACGG
CAAGATGTGGGTGCTGAAGCAGCACTTCAGCTGA
back to top