mRNA_H-paniculata_contig2351.6349.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2351.6349.1
Unique NamemRNA_H-paniculata_contig2351.6349.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2351.6349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2351contigH-paniculata_contig2351:6780..11862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_000220.1
Exons5
Model size585
Cds size564
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2351.6349.1prot_H-paniculata_contig2351.6349.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2351 6780..11841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.0319927-CDS-H-paniculata_contig2351:6779..68901622929668.0319927-CDS-H-paniculata_contig2351:6779..6890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2351 6780..6890 -
1691480959.1461675-CDS-H-paniculata_contig2351:6779..68901691480959.1461675-CDS-H-paniculata_contig2351:6779..6890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2351 6780..6890 -
1622929668.0517712-CDS-H-paniculata_contig2351:8643..87641622929668.0517712-CDS-H-paniculata_contig2351:8643..8764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2351 8644..8764 -
1691480959.1555464-CDS-H-paniculata_contig2351:8643..87641691480959.1555464-CDS-H-paniculata_contig2351:8643..8764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2351 8644..8764 -
1622929668.0682108-CDS-H-paniculata_contig2351:10946..110691622929668.0682108-CDS-H-paniculata_contig2351:10946..11069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2351 10947..11069 -
1691480959.163383-CDS-H-paniculata_contig2351:10946..110691691480959.163383-CDS-H-paniculata_contig2351:10946..11069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2351 10947..11069 -
1622929668.0841827-CDS-H-paniculata_contig2351:11329..114431622929668.0841827-CDS-H-paniculata_contig2351:11329..11443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2351 11330..11443 -
1691480959.174182-CDS-H-paniculata_contig2351:11329..114431691480959.174182-CDS-H-paniculata_contig2351:11329..11443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2351 11330..11443 -
1622929668.0991664-CDS-H-paniculata_contig2351:11746..118411622929668.0991664-CDS-H-paniculata_contig2351:11746..11841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2351 11747..11841 -
1691480959.1834412-CDS-H-paniculata_contig2351:11746..118411691480959.1834412-CDS-H-paniculata_contig2351:11746..11841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2351 11747..11841 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.1134884-UTR-H-paniculata_contig2351:11841..118621622929668.1134884-UTR-H-paniculata_contig2351:11841..11862Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2351 11842..11862 -
1691480959.1908777-UTR-H-paniculata_contig2351:11841..118621691480959.1908777-UTR-H-paniculata_contig2351:11841..11862Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2351 11842..11862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2351.6349.1

>prot_H-paniculata_contig2351.6349.1 ID=prot_H-paniculata_contig2351.6349.1|Name=mRNA_H-paniculata_contig2351.6349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MKRSEKQQLLKAEDGARLRRNRETEEWHITGNTGERASRPKKRHYLNGGG
VPGVDRFLASTDRALHLYDRGKALTTEMSAVMSDLGRREAALQLACKQYA
DKHASHEHPESRLKDGKWQVGSEELRLFVAAADRMTPRQREAFTDVLAPL
RDKSKEVIGPLESLKTRLQRAKNASAEQAASGELYGAG
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mRNA from alignment at H-paniculata_contig2351:6780..11862-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2351.6349.1 ID=mRNA_H-paniculata_contig2351.6349.1|Name=mRNA_H-paniculata_contig2351.6349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5083bp|location=Sequence derived from alignment at H-paniculata_contig2351:6780..11862- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGCGCGGAAGCGCTGCACATGAAGCGATCTGAGAAACAGCAGCTCCT
CAAAGCAGAAGACGGAGCAAGGCTGAGGCGAAATCGAGAGACAGAGGAAT
GGCACATCACAGGCAAGTATTGAGCGTCCCTTTCATTGGGATTCTATGTT
GCTCGTAGTTCTTCATTTGAGGCATTTTCAGGTGACTATCTATATCCATG
GCTGCTTCTCAATATTATGTAGATTGAAGAAGCATGAGTGGCAATCTGTG
TGCAATTATCTGTTGATGGCCGAGAGAGCGGTGGGTAACTCTCACTCATA
GCATCGATTCGGCTCAAGTCAAGATGTTGACTAGTATATGCGGATATATG
GATGATCATCCACGCCAAGAACATAATGCAACGATAACGGTCGTTCTGAA
TGTAAACAACCACCGTGAGTACAGGCGAACGAGCGTCCCGACCCAAGAAG
CGGCACTACCTGAATGGTGGTGGAGTGCCTGGCGTGGATAGGTTTTTGGC
TTCCACAGATCGAGCGTTACATCTGTATGATAGGTCCGTCCGCTCGTATA
TCACATGAACTAATGTATAGTACTGCACTTTTTAGGGGGGGGCTCTTGAG
GTCCAACAGTTGTGCCTTACTTACTGAAACTCTTGAAACCTACCTTTAAT
ATTGTATCAACGTCGTCACGTACTTCTCCAGCCATTATAGTTCTCCCTCG
ACGTTTACAGCTCCCTCTGTGAGCACTGTACAGAGAAACCGATCATTTAT
TCACGAGCGAAATTATTGGGCCTTCATTCGTGTTCTCCGTCAGGGGTAAG
GCTCTCACAACCGAGATGTCGGCAGTGATGTCAGACCTGGGAAGGAGGGA
GGCGGCGCTTCAACTAGCATGCAAACAATATGCCGACAAACATGCATCTC
ACGAGCACCCGGAGAGGTGGGCTCCGGTTAAGAGTAGTCATCTTGTGCTA
CTGTACTGTCAACAATTTTGCTTATTCGTTGGTTGATTCATGATCGTTAA
TGCGAATTGAGATTTTCCCCGTTAGTTTAATACGGGATTAAGTGTACGGA
TATGAATTTTATAGAAAGGCGTTTGGCCGTAGGTACCAAGAATCACTCGA
TGATTTATCACACACTAACGATCATTGTGCAAAAATTTGCCTTTGACTCT
TTTCTCTACTGACTATGTTCTCAAGCAACCTTCCATACCGTGACCATGCG
GTGAGCTCGTCCGTGTCACAGGCATGATGTCTGCTGAATCCCATACGAAC
AGTATTGACATCCTGTAGGCACGATTGGAAACGCCGAGCCCATTGCCCTA
GAACGGATTATTGATATACACCATTTCTTGCAAGCTGCAGTGGGCGTCGT
CCCGGGTGATCACGTTGTTCAAGAGGACCTTTCTCATGAAGTAAGACCCT
TTCACTGTAGAATGAAAGAGAGTAGTCCATCTTTCTAATGATTAACATAC
TAATATGACGTAAGAAAGGCTGCAAATGTTAAGGCCTGACCCGCGCAGTG
TCGTAAGCTAACTTCTCAGTATTTTTTTTCAGCTTACCGTTCAAATATTT
GACAAATTGTGCGCATTTGCTTGTTCTGGTCTTTTAAGTGTTGTGGGGCT
GCCTGTTGTGTTGTAAGGCGTAGAATTGCCGTTTGGCCGAGATTGTATTG
GGTTCTTGTTGAGTCAACAATCTATATTCATACGGTGTTGTATTGTTCAG
TGTTTCTGTGTATTTACTAATATATGTAGTACACTCCAGCAGTATGATCA
GGCTACCACATATGTATCGACGAGATCTGACCTGATTCAACGACACAGCG
TTTGGCATCACGAGGTTGGGAAAAAATCATTCGATTACCCTGGGTGCTAC
GAAAAGTACATACGAATACCATTCGCTCCTTCTCTTGCTGATAAAATGTG
ATCGTTCGTTCATCAGGTATATAGATGCCGTAGCTTCGTATGGTGTGCTA
CGATAAGTTGTGTCTTAGCTTTGGAATGTTTTTGTTTGTTGACAAGTAAA
TGCACACGTCTACACATCCATTCGTCCCACCCACCTGTTTTTTCTTTTAT
TTATCTCATCAACTGCAGTGTTACATAGGAAGTGCCCCCCCTAGTTTATT
CAATTCGTGGATAATAATCAGGCAATCCAGCAACTTGAAGATGCTGAGAA
TACCTCCTTATTGTTTAACGGCCGTCGCCATATTCATACCCCCGCCCGCC
CGCCCGCCCGCCCGCCCGCCCTTCTTTCACCGACGCTTGACGACCAACTT
TAGAAAGTCAGGATCGGAACTTCTTCAGAATAATTTTCTTCTTCAGCTAC
AACGTGCGCTATACAGCATGTAACCGCGCAAACTTTAGGAGCTTGAACAT
GTTTTCTCTTCGATAGCTATCGAATCGGACCTGGATATGGTGTATTTGTA
TCTTACACACAAAGACGAACCTAATATATATCTTGTTGCCTGTCACAGCC
TAATCCTAACTCTAACCCGATTGGCCCTTACACAATGAAAGGCTTATTCT
GCAGTTTATCCTAAACAATTTGGAATCTTTCAATACGGGGGAACAGTTCG
GAACTGGAGAAGCACAGTGATCAATATTCGTCCCCACCAAGGAAAGATCG
TGGTCTTGTCCCCTACCCGATATTGTAGTACCATCCAGCGCTAGCAACGT
ATTCTGACGAGTAATTAAAACCTCGTGTGGAGATAGATACTAGAGGAAAA
TAAATGGAGGGGTGGAGGGTATCTGACGATTTGCCATTGTCATGTTTCTA
ACAGAATTCAGGGTTACCCCTACCCTCCACTTCTTGTCCCCCTGTCACCC
TCACCGTCTTGGCAAAATGTTGCTTCACCAGCGACAGCATACCATGCTCT
CACACTCGACTAGGACCACCAACTTCCCAGTAGCTAGACGCGCGCTATGT
ATCACCATTTTTGCATACTACTGGTTATCCCAGATGAGAAAGACTCTGAT
TTTCTTCGCGATAACTCAACTTGACTTTTTTCCGCGAAAACTGTTCATTT
GGGAATTTTTAGGGTTCTATACCCACACTTTTTTTTTCTTAAATTTTGGT
ATACTGAAGGTTACAGTGCTTTTCACCGCGTGTGTCCAATCAATTAAGCA
GGCTTAAAGACGGAAAGTGGCAGGTTGGGTCAGAGGAGCTCCGATTGTTC
GTTGCCGCGGCAGACAGGATGACACCCAGGCAGCGGGAGGCCTTCACCGA
CGTCCTCGCTCCGCTCAGGGTGCGAAGGAAAGAACCATCGCTCGTAGATG
AAGCAGAGAGTTTTGGAGATATGGTTTTTAGACTTGAGAACGAGAACGTA
GTAAACCATAAAAACTAAATAGGGAAAATATATATACTTAGGCATACATG
TTTATTTTAAGTGGGGGGGGTGCCTATTTAATCCATGCCACCACATCGAA
CAAAACCCTCTGATAATAACACGCGCATTTGTGTTTTCACCATTTCCTTT
CTGATGTATTCAGCTATTTTACAATCGCATTCTCGAAACCAAAAACCGTG
TATGCGATACTCGCTAAGAACCAATCATTTAATTCGGAGCACAATAATTG
CACTATTGTCCCCATCAAATTAATAGGGAATTTCCTCACCAATACTTGGA
AACTAAATCACGTGAAACCCGGTGAAGAAGGAAGTTACCTCACACTGACT
GTTGGGCAGACATTGATCGATATGTTGATCGATCACACCGTAACGAGAAC
ATATCAAAATAGGACAATGACACCTCATTACTGGGGCGCACCACCTCAAC
GCGGAAAGTATAGTCATCATATAGAGCTACAGTCATAACATCTTTGTGAT
TGATGAAGAAGACGAATTGCTCAGTTGATTCGTCGGTCTGTCGCCACCGA
ATTAATTCTTCGACCGGTTATTTAGTTAGACGATACGTCACCTTGAATGA
GGTGTATCTGAAATAAATGATGATACACTTCCTGTCTCATGGGTATACTT
AATTACGATTATAGAGGCACTTAAAACAGCATATTGGTGAAATGGGGACC
CAAGTTTGAGATGGGGACCCTGGGGTATATTGGAAATAGGCCTTTTCCTG
AAAATCAATCGGATCAATCGGATCTTGAGGATACAGCCTACTTCCAATAT
AACCCAGGGTCCCCATCTCAAACTTGGGTCCCCATTTCACCAATATGCTG
TTTTAAACATCTCCGAGGTCTTTTTACTGGACTTCCAATTTTTTTTGTGC
TGAACGCCAACTGTTTGGGCGAAACGGTCGACTTTAAACACTAAACTTAC
GTCGTTCAAAAACACACTCGGTCGAAGAAAGGCTCTTTTTTGGGCTACTG
CTATTGTCCCATAAGTATTGTCTCATAAGTACAGAGTGTTGTAATTGGAG
AGGCCCTAAAACTATCTTCAAGATTTTTGAATATAATAATCCTACATGTC
GTTGGGGTTGAACTCGCCAAATATTGAGTCAATCAGTTGACGTTAAACAC
TAAAACATACGCCGTGAAGAAAGCACTGGGCAGTAAAACGCCAAGTTGTG
CACGTTTTTTTCGATTTATATAGGAAAAGTCCCCGAACGTATCGGATAAA
GGTTTTTACCTTAGCCTTCCGGGGGTTTAAAAAAGAAAAATAAAAGTCCC
GGAATATGGCCTTTTTTCGGCCGAGTGCTTTTTTTTCACGGCGAGAGTTT
TGGTGTTCAAAATCGACCGTTTGGCTCACAAAATCGGGATTCACCCCAAA
AAAAACTTTAGGATTCTAGTGAAAAAAACAAACACGGAGATAATTAAGAG
CCCCTATAATCTTAATTGAGTATACTTGTGAGACAAAGGAAGTAATATAG
ATTTTATCATGCATGCACACGTCAGCTGAACGATGGTAAACAGCTACTAG
AGCTCTATTATTTTGAGGTACAAGTTGTTTTTGTCGTAACTTGTGCTCGC
ACCCTCCTGTCCTTTGTTCAAATTGTGGATATATTTCTCGCCGCCCTTTC
TCTCCGGCGTGCACTTCCAAAGGACAAATCAAAGGAAGTCATCGGGCCGT
TGGAGTCTCTGAAAACGCGGCTGCAAAGGGCTAAGAATGCCTCCGCAGAG
CAAGCTGCTTCAGGCGAGCTGTATGGGGCTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2351:6780..11862-

>mRNA_H-paniculata_contig2351.6349.1 ID=mRNA_H-paniculata_contig2351.6349.1|Name=mRNA_H-paniculata_contig2351.6349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig2351:6780..11862- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCGATCTGAGAAACAGCAGCTCCTCAAAGCAGAAGACGGAGCAAG
GCTGAGGCGAAATCGAGAGACAGAGGAATGGCACATCACAGGCAAATGAA
GCGATCTGAGAAACAGCAGCTCCTCAAAGCAGAAGACGGAGCAAGGCTGA
GGCGAAATCGAGAGACAGAGGAATGGCACATCACAGGCAATACAGGCGAA
CGAGCGTCCCGACCCAAGAAGCGGCACTACCTGAATGGTGGTGGAGTGCC
TGGCGTGGATAGGTTTTTGGCTTCCACAGATCGAGCGTTACATCTGTATG
ATAGTACAGGCGAACGAGCGTCCCGACCCAAGAAGCGGCACTACCTGAAT
GGTGGTGGAGTGCCTGGCGTGGATAGGTTTTTGGCTTCCACAGATCGAGC
GTTACATCTGTATGATAGGGGTAAGGCTCTCACAACCGAGATGTCGGCAG
TGATGTCAGACCTGGGAAGGAGGGAGGCGGCGCTTCAACTAGCATGCAAA
CAATATGCCGACAAACATGCATCTCACGAGCACCCGGAGAGGGGTAAGGC
TCTCACAACCGAGATGTCGGCAGTGATGTCAGACCTGGGAAGGAGGGAGG
CGGCGCTTCAACTAGCATGCAAACAATATGCCGACAAACATGCATCTCAC
GAGCACCCGGAGAGCAGGCTTAAAGACGGAAAGTGGCAGGTTGGGTCAGA
GGAGCTCCGATTGTTCGTTGCCGCGGCAGACAGGATGACACCCAGGCAGC
GGGAGGCCTTCACCGACGTCCTCGCTCCGCTCAGGCAGGCTTAAAGACGG
AAAGTGGCAGGTTGGGTCAGAGGAGCTCCGATTGTTCGTTGCCGCGGCAG
ACAGGATGACACCCAGGCAGCGGGAGGCCTTCACCGACGTCCTCGCTCCG
CTCAGGGACAAATCAAAGGAAGTCATCGGGCCGTTGGAGTCTCTGAAAAC
GCGGCTGCAAAGGGCTAAGAATGCCTCCGCAGAGCAAGCTGCTTCAGGCG
AGCTGTATGGGGCTGGGGACAAATCAAAGGAAGTCATCGGGCCGTTGGAG
TCTCTGAAAACGCGGCTGCAAAGGGCTAAGAATGCCTCCGCAGAGCAAGC
TGCTTCAGGCGAGCTGTATGGGGCTGGG
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