mRNA_H-paniculata_contig235.6342.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig235.6342.1
Unique NamemRNA_H-paniculata_contig235.6342.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig235.6342.1 vs. uniprot
Match: A0A835Z7F5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F5_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.610e-31
Identity = 67/121 (55.37%), Postives = 81/121 (66.94%), Query Frame = 1
Query:   10 EELTKHTPEVRTAIYREMAEQKKEKEDRQKENLPKDXXXXXXXXXXXXXXXXXXAEGNIRQCNEGKLVFRFEETQASLVPEEGGERGGEIVLEVSVPRYLDSSLIDVDVHPHYLSVVIKGK 372
            EE T HTPEVRT IYRE+AEQK+EK++RQ+ENLPK+                   EG +RQCNEGKL F F+E              G ++L+++VPRYLDSSLIDVDVHPHY+SVVIKGK
Sbjct:  185 EETTPHTPEVRTQIYRELAEQKREKDERQRENLPKERDFEQEHKAATEKARQRELEGVVRQCNEGKLDFFFDEQSFH----------GHLLLDIAVPRYLDSSLIDVDVHPHYISVVIKGK 295          
BLAST of mRNA_H-paniculata_contig235.6342.1 vs. uniprot
Match: D7FT33_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT33_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.380e-22
Identity = 68/130 (52.31%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    7 EEELTKHTPEVRTAIYREMAEQKKEKEDRQKENLPKDXXXXXXXXXXXXXXXXXXAEGNIRQ--CNEGKLVFRFEET-QASLVPEEGGERG------GEIVLEVSVPRYLDSSLIDVDVHPHYLSVVIKG 369
            EEELTKHTPE RTAIYREMAEQK+EKE+RQKENLPKD                   +   R    +E KL FRFEET  AS  P  GG  G      G+IVLEV+VP++LDSSL+D+DV    L   +K 
Sbjct:  254 EEELTKHTPEARTAIYREMAEQKREKEERQKENLPKDRNFELEQTRLPRWRGPASEKPRARSDSAHEAKLEFRFEETGAASSTP--GGRVGRGSGSSGDIVLEVAVPKHLDSSLMDLDVLRLSLQAEVKA 381          
BLAST of mRNA_H-paniculata_contig235.6342.1 vs. uniprot
Match: A0A6G0W8A4_9STRA (Cysteine protease n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W8A4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.250e-21
Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   25 HTPEVRTAIYREMAEQKKEKEDRQKENLPKDXXXXXXXXXXXXXXXXXXAEGNIRQCNEGKLVFRFEETQASLVPEEGGERGGEIVLEVSVPRYLDSSLIDVDVHPHYLSVVIKGK 372
            +TPE R  +Y E+AEQK+E+E R++ NLPK+                   EG IRQCNEGK +FR +E            + G I+LEV VPR+LDSSLID+DVHP Y++++IK K
Sbjct:  216 YTPETRRTMYMELAEQKEEEEARKRANLPKERDYELEHKEAVEKARRMETEGTIRQCNEGKYIFRMDEET----------KPGYILLEVDVPRFLDSSLIDIDVHPTYVTILIKNK 321          
BLAST of mRNA_H-paniculata_contig235.6342.1 vs. uniprot
Match: A0A7S1GEZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEZ9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.770e-21
Identity = 57/115 (49.57%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   28 TPEVRTAIYREMAEQKKEKEDRQKENLPKDXXXXXXXXXXXXXXXXXXAEGNIRQCNEGKLVFRFEETQASLVPEEGGERGGEIVLEVSVPRYLDSSLIDVDVHPHYLSVVIKGK 372
            TPE RT +YR+MAEQK  +++R+KE  P++             XXXXXAEG IRQCNEGKL FR+EE        + GE  G + L V  PR+L +SLIDVDVHP +++++IK K
Sbjct:   42 TPEARTEMYRDMAEQKAAEDERKKEMAPRERDAAAEHEEALERXXXXXAEGRIRQCNEGKLAFRWEE--------DDGE--GNMRLRVDTPRFLSTSLIDVDVHPRWITIIIKNK 146          
BLAST of mRNA_H-paniculata_contig235.6342.1 vs. uniprot
Match: A0A812Z5R1_SYMMI (Lrrc6 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z5R1_SYMMI)

HSP 1 Score: 90.5 bits (223), Expect = 2.310e-20
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   13 ELTKHTPEVRTAIYREMAEQKKEKEDRQKENLPKDXXXXXXXXXXXXXXXXXX---AEGNIRQCNEGKLVFRFEETQASLVPEEGGERGGEIVLEVSVPRYLDSSLIDVDVHPHYLSVVIKGK 372
            ++T++TPEVRT +YRE+A+QKKEK +R + N PK+                      E  +RQ NEG   F ++E        EG  + G IVLEVS+ R++DSSLIDVDVHP Y+SVV+KGK
Sbjct:   66 QMTENTPEVRTQMYREIAQQKKEKAERDRVNAPKERDYEQEHSKAVEEARRKEEEMGEREVRQKNEGGFAFSWDE--------EG--KPGHIVLEVSLSRHMDSSLIDVDVHPSYVSVVVKGK 178          
BLAST of mRNA_H-paniculata_contig235.6342.1 vs. uniprot
Match: A0A024TMW4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TMW4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.320e-19
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    7 EEELTKHTPEVRTAIYREMAEQKKEKEDRQKENLPKDXXXXXXXXXXXXXXXXXXAEGNIRQCNEGKLVFRFEETQASLVPEEGGERGGEIVLEVSVPRYLDSSLIDVDVHPHYLSVVIKGK 372
            ++E   +TP+ R  +Y E+AEQK+E+E R++ NLP+D                  AEG IRQCNEGK  FR ++            + G +++EV VP++LDSSLI VD+HP Y+++VIK K
Sbjct:  211 QDEKLPYTPQTRRHMYMELAEQKEEEEARKRSNLPRDRDYEREHHDALATARHVEAEGAIRQCNEGKWEFRMDDET----------KPGFVLVEVGVPKFLDSSLIHVDMHPTYVTIVIKNK 322          
BLAST of mRNA_H-paniculata_contig235.6342.1 vs. uniprot
Match: F0YAK5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAK5_AURAN)

HSP 1 Score: 89.4 bits (220), Expect = 1.010e-18
Identity = 66/121 (54.55%), Postives = 83/121 (68.60%), Query Frame = 1
Query:   10 EELTKHTPEVRTAIYREMAEQKKEKEDRQKENLPKDXXXXXXXXXXXXXXXXXXAEGNIRQCNEGKLVFRFEETQASLVPEEGGERGGEIVLEVSVPRYLDSSLIDVDVHPHYLSVVIKGK 372
            +E   +TPEVRT +Y E+AEQK EK+ +Q    PK+ XXXXXXXXXXXXXX     G I+QCN+GK  F ++E            + G +VL+V V R+LDSSLID+DVHPHY+SVVIK K
Sbjct:  196 DEAAPYTPEVRTKMYEEVAEQKAEKDHKQNAMKPKERXXXXXXXXXXXXXXEREERGAIQQCNQGKWEFHWDEES----------KPGFVVLDVHVQRHLDSSLIDLDVHPHYVSVVIKSK 306          
BLAST of mRNA_H-paniculata_contig235.6342.1 vs. uniprot
Match: A0A024TNP9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNP9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.170e-18
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    7 EEELTKHTPEVRTAIYREMAEQKKEKEDRQKENLPKDXXXXXXXXXXXXXXXXXXAEGNIRQCNEGKLVFRFEETQASLVPEEGGERGGEIVLEVSVPRYLDSSLIDVDVHPHYLSVVIKGK 372
            ++E   +TP+ R  +Y E+AEQK+E+E R++ NLP+D                  AEG IRQCNEGK  FR ++            + G +++EV VP++LDSSLI VD+HP Y+++VIK K
Sbjct:  211 QDEKLPYTPQTRRHMYMELAEQKEEEEARKRSNLPRDRDYEREHHDALATARHVEAEGAIRQCNEGKWEFRMDDET----------KPGFVLVEVGVPKFLDSSLIHVDMHPTYVTIVIKNK 322          
BLAST of mRNA_H-paniculata_contig235.6342.1 vs. uniprot
Match: A0A6A4ZVD5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZVD5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.330e-18
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   25 HTPEVRTAIYREMAEQKKEKEDRQKENLPKDXXXXXXXXXXXXXXXXXXAEG-NIRQCNEGKLVFRFEETQASLVPEEGGERGGEIVLEVSVPRYLDSSLIDVDVHPHYLSVVIKGK 372
            +TP+ R  +Y E+AEQK+E+E R++ NLPK+                   +G  IRQCNEGK  F+ +E            + G I+LEVSVP+YLDSSLI+VDVHP Y+S++IK K
Sbjct:  195 YTPDTRRNMYLEIAEQKEEEEARKRTNLPKERDYEREHAETLAKARRMEGDGVEIRQCNEGKWEFKMDEIT----------KPGFILLEVSVPKYLDSSLINVDVHPTYVSILIKNK 301          
BLAST of mRNA_H-paniculata_contig235.6342.1 vs. uniprot
Match: A0A7S3HTQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTQ6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.250e-17
Identity = 56/123 (45.53%), Postives = 71/123 (57.72%), Query Frame = 1
Query:   10 EELTKHTPEVRTAIYREMAEQKKEKEDRQKENLPKDXXXXXXXXXXXXXXXXXXAE--GNIRQCNEGKLVFRFEETQASLVPEEGGERGGEIVLEVSVPRYLDSSLIDVDVHPHYLSVVIKGK 372
            +E+T +TPE R  IY+E+A+QKKEKEDR   N PK                   AE  G+I+Q NEG   F ++E            R G +VLEV V ++LDSSLIDVDVHP Y+S+VIK K
Sbjct:  249 QEMTDNTPETRVRIYQELAQQKKEKEDRANVNAPKKRNYEKEQEESIKAIRDKEAEEAGDIKQKNEGGWEFYWDEET----------RPGMVVLEVRVQKFLDSSLIDVDVHPTYVSMVIKSK 361          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig235.6342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7F5_9STRA1.610e-3155.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FT33_ECTSI2.380e-2252.31Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6G0W8A4_9STRA1.250e-2145.69Cysteine protease n=1 Tax=Aphanomyces euteiches Ta... [more]
A0A7S1GEZ9_9STRA3.770e-2149.57Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812Z5R1_SYMMI2.310e-2045.53Lrrc6 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A024TMW4_9STRA8.320e-1940.98Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
F0YAK5_AURAN1.010e-1854.55Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A024TNP9_9STRA1.170e-1840.98Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A6A4ZVD5_9STRA5.330e-1844.44Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S3HTQ6_9STRA1.250e-1745.53Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig235contigH-paniculata_contig235:4477..5894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue3.4e-19
Seed eggNOG ortholog2880.D7FT33
KEGG koko:K19753
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size373
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929666.707801-CDS-H-paniculata_contig235:4476..47101622929666.707801-CDS-H-paniculata_contig235:4476..4710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig235 4477..4710 -
1691480958.5329883-CDS-H-paniculata_contig235:4476..47101691480958.5329883-CDS-H-paniculata_contig235:4476..4710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig235 4477..4710 -
1622929666.7196052-CDS-H-paniculata_contig235:5756..58941622929666.7196052-CDS-H-paniculata_contig235:5756..5894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig235 5757..5894 -
1691480958.5470698-CDS-H-paniculata_contig235:5756..58941691480958.5470698-CDS-H-paniculata_contig235:5756..5894Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig235 5757..5894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig235.6342.1prot_H-paniculata_contig235.6342.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig235 4477..5894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig235.6342.1

>prot_H-paniculata_contig235.6342.1 ID=prot_H-paniculata_contig235.6342.1|Name=mRNA_H-paniculata_contig235.6342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
KKEEELTKHTPEVRTAIYREMAEQKKEKEDRQKENLPKDRDFDQEQQEAI
ASAREREAEGNIRQCNEGKLVFRFEETQASLVPEEGGERGGEIVLEVSVP
RYLDSSLIDVDVHPHYLSVVIKGK
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mRNA from alignment at H-paniculata_contig235:4477..5894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig235.6342.1 ID=mRNA_H-paniculata_contig235.6342.1|Name=mRNA_H-paniculata_contig235.6342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1418bp|location=Sequence derived from alignment at H-paniculata_contig235:4477..5894- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAAGAAGAGGAGCTGACAAAGCACACGCCGGAGGTACGCACGGCGAT TTACCGTGAGATGGCCGAACAGAAGAAGGAAAAGGAGGACCGACAGAAGG AAAATCTGCCCAAGGACAGAGACTTCGATCAGGAGCAGGTCAGAAAAATG ACGAGAAAATCCCGTTGGTCATGTAGTGCATAGGGTCCCCTCAAAGTATA TTCATCTTGCCCAAACGAAACAACAACAAAAGCACGCAAAATAAAAAATC ACAATGTTTTCGTATTTACCCACTGATCTATACGCGAGTGGTCATTATCC ATTCGAAATCTGTCATTCTCCATAATTCGAGCAGCTCCACCCCTTGACCA ATACCGTACTACCTGGAGGTATCTCACCCCTCATGGGTATCACACCGTGT GATCTGTCACGGGCGTGTTAAATGTATTCGGCAAAATTGCTGTGAAATGT ATGTGGTCTCTTTTATTATTATAATTAGTTAAGTTTAACAGAATTCTCTC AAACTCTGCGACCCGCGGTCGCAGGATGCGGTATGACATGATCGAAATGT GTTTCATGTGCCGTTTGTTGTTTGCAGTACAGACAGTAGTGCCTAGTGGT AGCAAGTGCTTCAGCCCCGCCCTCGATCACCTAGCAGCGAACAGACGCGT TTTCGTCTGTTCGCATACGATGCGCGATCTCACCCAGTGCCGAAATTGGA CTTTTTTGTTGTCGCACCCCCCCCCAAGAGTATCGCACCGTTCGATCTGC CATGATCGAGGATATTTTCGCTTCGCACCCGGTGCTATACCTCCGGGTAT TACGGTAATATATTTCCAAGAAACAAGCAGTCATACGCCAGCCTATTGTT TTCTTAATATTCAACACGAAACTTTGATTTTAGCATTCTCTAAAAAGCTT TTATGTCAAAGAAAAACCGACATTGGAAATAGAAGTAGATGTATCCAAGT GATGCGTGTACTCTATTTACTCGAATCACTCCAATAAAATGAAGAAATCC GTATCATCAGGTGCGGATAAAAGTCACCTTCTGCCTGCTTTAGTAACCCA TCGATCAAAATCAGTCATAACGATTTCTATTAAGAAAAGTGATGCCAATA GATACATACAGTCCACACTAATTTCGACTAGTTTTTGGCGAACTTGGGTC GCTTCGCTCAGCATTCACTAATTTAATTCTACAGCAAGAAGCCATCGCGA GTGCGCGGGAGAGAGAAGCCGAGGGCAATATCCGACAATGCAACGAGGGG AAACTGGTGTTTCGGTTCGAAGAGACACAAGCGAGCTTGGTGCCAGAGGA GGGGGGAGAGCGGGGCGGAGAGATCGTGCTGGAGGTGTCCGTTCCGCGGT ACCTGGACAGCTCGCTGATCGACGTCGATGTGCACCCTCACTACCTGAGC GTTGTCATCAAGGGAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig235:4477..5894-

>mRNA_H-paniculata_contig235.6342.1 ID=mRNA_H-paniculata_contig235.6342.1|Name=mRNA_H-paniculata_contig235.6342.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig235:4477..5894- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAAGAAGAGGAGCTGACAAAGCACACGCCGGAGGTACGCACGGCGAT
TTACCGTGAGATGGCCGAACAGAAGAAGGAAAAGGAGGACCGACAGAAGG
AAAATCTGCCCAAGGACAGAGACTTCGATCAGGAGCAGAAGAAAGAAGAG
GAGCTGACAAAGCACACGCCGGAGGTACGCACGGCGATTTACCGTGAGAT
GGCCGAACAGAAGAAGGAAAAGGAGGACCGACAGAAGGAAAATCTGCCCA
AGGACAGAGACTTCGATCAGGAGCAGCAAGAAGCCATCGCGAGTGCGCGG
GAGAGAGAAGCCGAGGGCAATATCCGACAATGCAACGAGGGGAAACTGGT
GTTTCGGTTCGAAGAGACACAAGCGAGCTTGGTGCCAGAGGAGGGGGGAG
AGCGGGGCGGAGAGATCGTGCTGGAGGTGTCCGTTCCGCGGTACCTGGAC
AGCTCGCTGATCGACGTCGATGTGCACCCTCACTACCTGAGCGTTGTCAT
CAAGGGAAAGCAAGAAGCCATCGCGAGTGCGCGGGAGAGAGAAGCCGAGG
GCAATATCCGACAATGCAACGAGGGGAAACTGGTGTTTCGGTTCGAAGAG
ACACAAGCGAGCTTGGTGCCAGAGGAGGGGGGAGAGCGGGGCGGAGAGAT
CGTGCTGGAGGTGTCCGTTCCGCGGTACCTGGACAGCTCGCTGATCGACG
TCGATGTGCACCCTCACTACCTGAGCGTTGTCATCAAGGGAAAG
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