mRNA_H-paniculata_contig10980.633.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10980.633.1
Unique NamemRNA_H-paniculata_contig10980.633.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10980.633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10980contigH-paniculata_contig10980:3909..5395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size541
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10980.633.1prot_H-paniculata_contig10980.633.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10980 4922..5395 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.6879675-UTR-H-paniculata_contig10980:3908..39691622928804.6879675-UTR-H-paniculata_contig10980:3908..3969Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10980 3909..3969 +
1691480626.4820244-UTR-H-paniculata_contig10980:3908..39691691480626.4820244-UTR-H-paniculata_contig10980:3908..3969Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10980 3909..3969 +
1622928804.7001565-UTR-H-paniculata_contig10980:4916..49211622928804.7001565-UTR-H-paniculata_contig10980:4916..4921Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10980 4917..4921 +
1691480626.4938502-UTR-H-paniculata_contig10980:4916..49211691480626.4938502-UTR-H-paniculata_contig10980:4916..4921Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10980 4917..4921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.7124655-CDS-H-paniculata_contig10980:4921..53951622928804.7124655-CDS-H-paniculata_contig10980:4921..5395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10980 4922..5395 +
1691480626.501395-CDS-H-paniculata_contig10980:4921..53951691480626.501395-CDS-H-paniculata_contig10980:4921..5395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10980 4922..5395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10980.633.1

>prot_H-paniculata_contig10980.633.1 ID=prot_H-paniculata_contig10980.633.1|Name=mRNA_H-paniculata_contig10980.633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MIESDSMPPHWGSDTAPRPSPLSPPPPARAVYSRSAEVPLLRTDRTPTTP
TTDATAGELTPTTATRVAQRCHHAQQARRDCARGPLETNETAEISPLHRR
RRPRPPSNSSPHHHCHSSPRTIAGTRRHSWPLSSGTTMVGGSFGAFACAL
GVMLLWGG
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mRNA from alignment at H-paniculata_contig10980:3909..5395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10980.633.1 ID=mRNA_H-paniculata_contig10980.633.1|Name=mRNA_H-paniculata_contig10980.633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1487bp|location=Sequence derived from alignment at H-paniculata_contig10980:3909..5395+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTCGCTGTGAGTTGGTGATGAAAGGGTTGGAGGGACTGGTAATACAGA
CTGTAGACCCGGTGAGTCTTTAACCCCGTATTATGGAGGTGGTACTTTGT
CCGGCTGTCAAGAAGATGTCTCCTTGTCGACAGTGTGCTGTACGTACAGA
GTCAGTACTAGAGCTTGGGTTTGCTGAACTTCTACACTCAATATGTATAC
ACCATACCTCAGATGTATCAACATCACATATATGTATGAGTGCATGAATG
CAGGACTCCAATCAATGTACGGAGCAGAAGGAACGGCGCTGCTATACCAA
GCTACATCGAGCTACATTAATCATATAGACCTTTTTGCACCACAGAAGAC
TGACATTTGTGCTTCATTGAGCATCATGAAATGCACCAGACAAGGGAACG
CAATACCGCTCAAACTTGAAAACGGCTAAGATTCTCCCACCCAGGTTGTT
CTGCTACGATACCTCGATACCTCATCTTAATCGCCACTTACAAATGTCAA
CTCCGTCACAGCACACCCTCAAGCCTACTCCTGACCCCTCCTCTTCCGTA
GATGGATATGTTTACTGCTATGCTGGCATTTGTCCGGGTCTTTCTATAAC
ACTGTTCGCTATTCCAGTTCACATCGTCCCGTGTTTTGGCGCGTGCCGCC
AGAGGTTTTTTGAACACGCTTATGCTACTACTTGTTAATACTCACGACGG
CGAGTACTGTAATACCATACTCGATTGCAGTACCCAAAGTGTTAGCTTTT
CATGTTTCTTGATGCTCGCCATATCAAACAGTGAAAGATGATGGAACATA
TGCCTCGTCCACAAGCGACTCCAGCACCCTTCGGCGCATTTCATATTGCT
GTACTGTAGAGTAGTGTATATACCTCCACATGGGGATAGTTCATTTGAGA
GTCAGTGAAGGTAACCAACCCCTCACGCAGAGGGTAAAAAAGCAAAGATT
CACCTCTTCTCTCCACACCCTATATGACATTTGACACCTTTGATCCCTTG
TAATGCAGGACGGATGATTGAAAGTGATAGCATGCCTCCTCACTGGGGCA
GCGACACTGCACCGCGACCATCACCACTGTCGCCGCCGCCGCCTGCACGG
GCTGTCTATTCACGGAGCGCAGAGGTCCCCTTGCTTCGAACGGACAGGAC
ACCAACAACACCAACAACAGACGCCACTGCTGGTGAATTGACACCAACAA
CAGCAACGAGAGTGGCACAGCGTTGCCACCACGCGCAGCAGGCTCGACGG
GATTGCGCACGAGGACCGCTGGAGACCAACGAGACGGCAGAGATATCACC
CCTCCATCGAAGACGACGTCCGCGCCCCCCTAGCAATAGCTCTCCTCACC
ACCATTGCCACTCCTCGCCCAGAACGATCGCGGGCACGCGACGACATTCT
TGGCCGTTGTCAAGTGGAACCACCATGGTTGGAGGTTCGTTTGGCGCCTT
CGCGTGCGCTCTAGGGGTGATGCTGTTGTGGGGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10980:3909..5395+

>mRNA_H-paniculata_contig10980.633.1 ID=mRNA_H-paniculata_contig10980.633.1|Name=mRNA_H-paniculata_contig10980.633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig10980:3909..5395+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGAAAGTGATAGCATGCCTCCTCACTGGGGCAGCGACACTGCACC
GCGACCATCACCACTGTCGCCGCCGCCGCCTGCACGGGCTGTCTATTCAC
GGAGCGCAGAGGTCCCCTTGCTTCGAACGGACAGGACACCAACAACACCA
ACAACAGACGCCACTGCTGGTGAATTGACACCAACAACAGCAACGAGAGT
GGCACAGCGTTGCCACCACGCGCAGCAGGCTCGACGGGATTGCGCACGAG
GACCGCTGGAGACCAACGAGACGGCAGAGATATCACCCCTCCATCGAAGA
CGACGTCCGCGCCCCCCTAGCAATAGCTCTCCTCACCACCATTGCCACTC
CTCGCCCAGAACGATCGCGGGCACGCGACGACATTCTTGGCCGTTGTCAA
GTGGAACCACCATGGTTGGAGGTTCGTTTGGCGCCTTCGCGTGCGCTCTA
GGGGTGATGCTGTTGTGGGGAGGGATGATTGAAAGTGATAGCATGCCTCC
TCACTGGGGCAGCGACACTGCACCGCGACCATCACCACTGTCGCCGCCGC
CGCCTGCACGGGCTGTCTATTCACGGAGCGCAGAGGTCCCCTTGCTTCGA
ACGGACAGGACACCAACAACACCAACAACAGACGCCACTGCTGGTGAATT
GACACCAACAACAGCAACGAGAGTGGCACAGCGTTGCCACCACGCGCAGC
AGGCTCGACGGGATTGCGCACGAGGACCGCTGGAGACCAACGAGACGGCA
GAGATATCACCCCTCCATCGAAGACGACGTCCGCGCCCCCCTAGCAATAG
CTCTCCTCACCACCATTGCCACTCCTCGCCCAGAACGATCGCGGGCACGC
GACGACATTCTTGGCCGTTGTCAAGTGGAACCACCATGGTTGGAGGTTCG
TTTGGCGCCTTCGCGTGCGCTCTAGGGGTGATGCTGTTGTGGGGAGGG
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