mRNA_H-paniculata_contig23495.6340.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23495.6340.1
Unique NamemRNA_H-paniculata_contig23495.6340.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23495.6340.1 vs. uniprot
Match: D7FIN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN4_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 6.220e-34
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 NRLLHWTVEHPDDITRANFLRGDHAHFFTNLDKYDLVEMRAITACLPERFVVDGDGRKAAWRAGFLQRIQAMVSQ 225
            NRLLHW V HPDDI R+NFLRGDHAHFFTNLDKYDLVE+RAI ACLP +F VD DGRKAAWR  FLQR Q++V+Q
Sbjct: 1066 NRLLHWVVTHPDDIARSNFLRGDHAHFFTNLDKYDLVELRAIMACLPAKFEVDADGRKAAWRELFLQRAQSLVAQ 1140
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BLAST of mRNA_H-paniculata_contig23495.6340.1 vs. uniprot
Match: D7FT01_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT01_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 8.920e-32
Identity = 55/75 (73.33%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 NRLLHWTVEHPDDITRANFLRGDHAHFFTNLDKYDLVEMRAITACLPERFVVDGDGRKAAWRAGFLQRIQAMVSQ 225
            NRLLHWTV HP+DI R+NFL+G HAHFFTNLDKYDLVEMRA+ ACLP +F VD DGRK AWRA F+QR + +V+Q
Sbjct:  513 NRLLHWTVMHPEDIARSNFLQGAHAHFFTNLDKYDLVEMRAVMACLPAKFEVDDDGRKTAWRAEFVQRAKGLVAQ 587
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BLAST of mRNA_H-paniculata_contig23495.6340.1 vs. uniprot
Match: D7FTS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS2_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.990e-30
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 NRLLHWTVEHPDDITRANFLRGDHAHFFTNLDKYDLVEMRAITACLPERFVVDGDGRKAAWRAGFLQRIQAMVSQ 225
            NRLL W V HP+DI R+NFL+G HAHFFTN+DKYDLVEMRAI ACLP +F VD DGRKAAWRA F+QR + +V+Q
Sbjct:  529 NRLLQWVVMHPEDIARSNFLQGAHAHFFTNMDKYDLVEMRAILACLPAKFEVDDDGRKAAWRAEFVQRAKGLVAQ 603
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BLAST of mRNA_H-paniculata_contig23495.6340.1 vs. uniprot
Match: A0A067C5X9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5X9_SAPPC)

HSP 1 Score: 85.1 bits (209), Expect = 1.870e-17
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 NRLLHWTVEHPDDITRANFLRGDHAHFFTNLDKYDLVEMRAITACLPERFVVDGDGRKAAWRAGFLQRIQAMVSQ 225
            N+LL W V H  D  R NF+ GD A  FTNL+ YD+ EMRAI   LP+ F  D +GRKA WR GF+  ++ +V Q
Sbjct:  542 NKLLQWVVTHEVDKARDNFISGDTAQCFTNLELYDITEMRAIYLALPDAFEFDKEGRKAEWRVGFIAHLKVLVQQ 616
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BLAST of mRNA_H-paniculata_contig23495.6340.1 vs. uniprot
Match: A0A1V9ZGN9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGN9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.490e-17
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    1 NRLLHWTVEHPDDITRANFLRGDHAHFFTNLDKYDLVEMRAITACLPERFVVDGDGRKAAWRAGFLQRIQAMVSQ 225
            N+LL W V H  D  R NF+ GD A  FTNL+ YD+ EMR I   LPE F  D +GRKA WRA F+  ++ +V Q
Sbjct:  554 NKLLQWVVTHEKDKARDNFISGDTAQCFTNLEMYDITEMRGIYLALPESFEFDKEGRKAEWRADFIAHLKILVQQ 628
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BLAST of mRNA_H-paniculata_contig23495.6340.1 vs. uniprot
Match: A0A1V9ZQ70_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ70_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.660e-16
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    1 NRLLHWTVEHPDDITRANFLRGDHAHFFTNLDKYDLVEMRAITACLPERFVVDGDGRKAAWRAGFLQRIQAMVSQ 225
            N+LL W V H  D  R NF+ GD A  FTN++ YD+ E+RAI   LPE F  D +GRK+ WR  F+  ++ +V Q
Sbjct:  537 NKLLQWVVTHEKDKARENFITGDTAQCFTNIEMYDITELRAIYLALPENFEFDKEGRKSEWRQNFVSHLKVLVQQ 611
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BLAST of mRNA_H-paniculata_contig23495.6340.1 vs. uniprot
Match: A0A6H5JQI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI8_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.060e-16
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    4 RLLHWTVEHPDDITRANFLRGDHAHFFTNLDKYDLVEMRAITACLPERFVVDGDGRKAAWRAGFLQRIQAMVSQ 225
            R LHW V  P+DI  ANFL G+ A  FT L+  DL EMRA+ + LP  F+ DGDG+KA WRA F  +++ +  Q
Sbjct:  278 RPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQ 351
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BLAST of mRNA_H-paniculata_contig23495.6340.1 vs. uniprot
Match: D7FRP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP3_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 7.920e-16
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    4 RLLHWTVEHPDDITRANFLRGDHAHFFTNLDKYDLVEMRAITACLPERFVVDGDGRKAAWRAGFLQRIQAMVSQ 225
            R LHW V  P+DI  ANFL G+ A  FT L+  DL EMRA+ + LP  F+ DGDG+KA WRA F  +++ +  Q
Sbjct:  894 RPLHWLVSAPEDIAGANFLAGEGAAAFTQLEGMDLTEMRAVWSVLPREFLRDGDGKKAEWRARFRVQLEGLARQ 967
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BLAST of mRNA_H-paniculata_contig23495.6340.1 vs. uniprot
Match: K3WIK8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIK8_GLOUD)

HSP 1 Score: 76.3 bits (186), Expect = 2.390e-14
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:    1 NRLLHWTVEHPDDITRANFLRGDHAHFFTNLDKYDLVEMRAITACLPER-FVVDGDGRKAAWRAGFLQRIQAMVSQ 225
            NRLLHW V H  DI R NFL  + A +F N   YD+ E+RA+ A LPE  F  D DG+KA W+  F+  +  +V Q
Sbjct:  412 NRLLHWLVTHESDIARDNFLAIECASWFLNFTSYDINELRAVAAVLPETGFEFDKDGKKANWKTQFMDHVHMLVKQ 487
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BLAST of mRNA_H-paniculata_contig23495.6340.1 vs. uniprot
Match: A0A5D6XHR3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHR3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.400e-12
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:    1 NRLLHWTVEHPDDITRANFLRGDHAHFFTNLDKYDLVEMRAITACLPER----FVVDGDGRKAAWRAGFLQRIQAMVSQ 225
            NR LHW V H  D+ R NFL  + A  F N    D+ E+RA++  LP      F  D DGRKAAW+A FL  + A+V++
Sbjct:  719 NRFLHWLVTHASDVARDNFLALESAAHFLNFAALDVFELRALSTALPLSAAGGFEFDRDGRKAAWKAQFLDHVYALVAR 797
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23495.6340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FIN4_ECTSI6.220e-3478.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT01_ECTSI8.920e-3273.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTS2_ECTSI1.990e-3072.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A067C5X9_SAPPC1.870e-1750.67Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZGN9_9STRA3.490e-1750.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1V9ZQ70_9STRA1.660e-1646.67Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A6H5JQI8_9PHAE5.060e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRP3_ECTSI7.920e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3WIK8_GLOUD2.390e-1447.37Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XHR3_9STRA1.400e-1244.30Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23495contigH-paniculata_contig23495:716..3401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.2e-28
Seed eggNOG ortholog2880.D7FIN4
Hectar predicted targeting categoryother localisation
EggNOG OGs2C7IG@1,2QWI0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929666.5833578-CDS-H-paniculata_contig23495:715..8141622929666.5833578-CDS-H-paniculata_contig23495:715..814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23495 716..814 +
1691480958.4720333-CDS-H-paniculata_contig23495:715..8141691480958.4720333-CDS-H-paniculata_contig23495:715..814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23495 716..814 +
1622929666.5991454-CDS-H-paniculata_contig23495:3251..34011622929666.5991454-CDS-H-paniculata_contig23495:3251..3401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23495 3252..3401 +
1691480958.4850202-CDS-H-paniculata_contig23495:3251..34011691480958.4850202-CDS-H-paniculata_contig23495:3251..3401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23495 3252..3401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23495.6340.1prot_H-paniculata_contig23495.6340.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23495 716..3401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23495.6340.1

>prot_H-paniculata_contig23495.6340.1 ID=prot_H-paniculata_contig23495.6340.1|Name=mRNA_H-paniculata_contig23495.6340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
NRLLHWTVEHPDDITRANFLRGDHAHFFTNLDKYDLVEMRAITACLPERF
VVDGDGRKAAWRAGFLQRIQAMVSQVSLEPSH*
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mRNA from alignment at H-paniculata_contig23495:716..3401+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23495.6340.1 ID=mRNA_H-paniculata_contig23495.6340.1|Name=mRNA_H-paniculata_contig23495.6340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2686bp|location=Sequence derived from alignment at H-paniculata_contig23495:716..3401+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCGCCTCCTGCACTGGACCGTGGAACACCCTGATGACATCACGCGGGC
CAACTTCTTACGGGGAGATCACGCTCATTTTTTCACCAACTTGGACAAGG
TGAGCGAATGAACGAATGCGGCCTGTACTTGGCCTATAATCATGATCCAC
ACATCCCATTTATGGTTCCCTATAGTTGGGTACTGTACCTACACTCATAA
TCGATATGTACTCTTTATGATCCCCTATATGTGGGATGTCATGATCCACA
CGTAGCGTTTGTGACCCCCTATATTTGGGTACTCCACCTAGAGCCATAGT
TCACACCTGCCGTTTGTGGTCCCCCATTCATAATTGAGTTCTCTGTCTGC
AGTCGTTTGTGATGCCCTCTTCTAATTGACACGGCGAGGGGGATGATTTG
AGAGCTTGTTGCCTTGTAATATTTGACCATTCGGAGTGGTGTCACTTTTC
TATTATTTACCCTTAATTGTTTTGTTGTATTTGTTTGGGATTTTTTTTCA
ACACTTGGAGTTATGTTCAGTAGGTTCGTCAGTTAGAGTGCCCCCTGCTG
TTATTAGATCAATGTACTCTATGTCTACCGCTTCTCAGATTAGCATGTCT
AAAGGTACCTGCGGTACTCGATACCCTAGAGCGACGTCAAAACGCCCGGG
GGGGTGATTTTCGTTTCAGACCCGATTTTGTCGAATACGACGGTGCCAGT
TATTGGAGTGTTCGGGCAAGACGAGTAGTTTTGTGTAAGATTTGGTTTGG
TGGTGTGCAGCTGACAGTGATTGGCCCGTCGTAAATCCCCTCGGGAGTTC
AGCTCACCTTCTCCATACATGAACATGTTCTTATTACGAAAGGGATTCCT
CTTACAAAGTCGTCTGTTTCGTGAGAGATACGAATGGCCACTGGTCGTGA
TGAGGAGTTCGCTTTGCAACGAGACGTTGGTGTAGGGTGAACTGGGGCTC
CGAGACGAGGAGACCATTGTTGGCTGTACACACGACGAAATCGAGATTTT
CAAAAGCGAGGAAACGAGTTTGCGATAACACTATTATTGACACCGAAAGT
TTGTTTCGTTGGAAAAGATATCGTCGAGATGGATCTGTCGATCAACGTGC
TCTTTCTAAATAGCGTACATGGACTTTGCTTTCGAGAAGAATCGTGCCTC
GAATGAAATCATCCCCGTGGCGTTCTGAAAGCACAATAATAGCAAAGACA
CTGATACATGCATTGGTACTGAATACACGACTAGTATACTGGTAGGGATA
TTCCAACGGCCACACTTGATATCCTGTTGGAAAAACGCGGAAGAAGGTGC
TCATGGAGCGCCTCAAGTAGGTCACTTCGGTCACAGCGCAGGTGGCCATA
TCGAGATGGAGACAACAATTTATCGTATGTATGTGATCGGACATTCTGAA
CCTTGATGCGATTACATTTTTTTCTTTTTTTTAATGTTATGGGGCATTTG
TTGTATTGCGACAACGGACAGAATTGACTGGAGCACAGCAATCAGTTTAA
ATATTACAGTAGACATGATTCTGTCACATTCCGCTTTTCCGCTGGCTATT
TCAATGTCGCCAGATAATCGAATTTTGGTAGTCGAGTAGTGGAGGCCTGG
GTACTTCGCCTTTCATAAGGGTAGTGTAATTTACTGTACTAAACTCGTGT
CGACACAGCAGCTGTCCCTGAAGGTGGCTGAAGTTTGCTGATGAGTGATG
ATTGTCATATACTAGCTTCAAAGATTTTTTCTGGGTTTGCGTTGTTCCCG
AACGTGACGTCATCCATGGCAAAAATTACCCGAATGCGAATGTGAAATTA
TGATGAGTCACATCACGTGTTTGTGTCAACCAAGTCATTTTCGGCCAATC
ATTTCCGCCCCTATCAACGAGACTAACAGATAGAAACATTGCGGGAACCA
TTTCTCTCCCTCCTTTTATGTAGAAAAATTGGGGGAACCATTTCGATGAG
CGCCGTCTGCATCAGCTACCTACCTCAGCATGATATCTGTTATGTGTGCG
TTCCATACTTGCTCTGTATTTGTTGCCCGTTCATCTACGAAAAGGATGAT
GGAGTATGACAATCAAGAAAACATAAATGCCCCCTTATCGGATTTAACCC
TCCTCCCCTCCCCCTTCCACTTTGGCAATGTAGGATTGAACCATAGGCTA
TCGGTAATTTCTCCGGAAGGAAAAAAGCTCCGTCTTCCCGGGAACGCGTG
GTTAACGCCCTAATAACTATGCCATGCAAAACACGAGTTCCCCCCCCCCC
TCCCCTTGATATATATTTTTATGATATGCGTACATAACTGAATTTTGAAG
TTATGTGCAAGCTCCCCCCTGTCCTTTCCACCCCAGAGTGTGCACCCTCT
GCATGCACCACTCGGAAGCGTTGTGAGGGAAGGAGCTTAAGCCCACGGCA
AGATTAACCTCCCCCCTCCCCCTTAACCGTCGTTGCTGTTGCCGCTACCG
CACACCATATCTCCTCCCTTTGCTTTCCCAATCTCCCGTTTACTGCAATG
GTAACTCGCTAACTCTTGCAATACATTGTAAACCAGTACGATCTGGTAGA
GATGAGGGCCATAACCGCGTGCTTGCCAGAGCGGTTCGTGGTGGACGGCG
ACGGGCGTAAGGCGGCCTGGCGAGCGGGTTTCTTGCAGCGCATACAGGCC
ATGGTGTCGCAGGTGAGTCTTGAGCCTTCACATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig23495:716..3401+

>mRNA_H-paniculata_contig23495.6340.1 ID=mRNA_H-paniculata_contig23495.6340.1|Name=mRNA_H-paniculata_contig23495.6340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig23495:716..3401+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCGCCTCCTGCACTGGACCGTGGAACACCCTGATGACATCACGCGGGC
CAACTTCTTACGGGGAGATCACGCTCATTTTTTCACCAACTTGGACAAGA
ACCGCCTCCTGCACTGGACCGTGGAACACCCTGATGACATCACGCGGGCC
AACTTCTTACGGGGAGATCACGCTCATTTTTTCACCAACTTGGACAAGTA
CGATCTGGTAGAGATGAGGGCCATAACCGCGTGCTTGCCAGAGCGGTTCG
TGGTGGACGGCGACGGGCGTAAGGCGGCCTGGCGAGCGGGTTTCTTGCAG
CGCATACAGGCCATGGTGTCGCAGGTGAGTCTTGAGCCTTCACATTAGTA
CGATCTGGTAGAGATGAGGGCCATAACCGCGTGCTTGCCAGAGCGGTTCG
TGGTGGACGGCGACGGGCGTAAGGCGGCCTGGCGAGCGGGTTTCTTGCAG
CGCATACAGGCCATGGTGTCGCAGGTGAGTCTTGAGCCTTCACATTAG
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