mRNA_H-paniculata_contig23492.6339.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23492.6339.1
Unique NamemRNA_H-paniculata_contig23492.6339.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23492.6339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23492contigH-paniculata_contig23492:1898..3413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size1056
Cds size840
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23492.6339.1prot_H-paniculata_contig23492.6339.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23492 2090..3389 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929666.5077083-UTR-H-paniculata_contig23492:1897..20891622929666.5077083-UTR-H-paniculata_contig23492:1897..2089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23492 1898..2089 -
1691480958.43218-UTR-H-paniculata_contig23492:1897..20891691480958.43218-UTR-H-paniculata_contig23492:1897..2089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23492 1898..2089 -
1622929666.5430691-UTR-H-paniculata_contig23492:3389..34131622929666.5430691-UTR-H-paniculata_contig23492:3389..3413Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23492 3390..3413 -
1691480958.4607074-UTR-H-paniculata_contig23492:3389..34131691480958.4607074-UTR-H-paniculata_contig23492:3389..3413Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23492 3390..3413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929666.520446-CDS-H-paniculata_contig23492:2089..25591622929666.520446-CDS-H-paniculata_contig23492:2089..2559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23492 2090..2559 -
1691480958.441575-CDS-H-paniculata_contig23492:2089..25591691480958.441575-CDS-H-paniculata_contig23492:2089..2559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23492 2090..2559 -
1622929666.5310788-CDS-H-paniculata_contig23492:3019..33891622929666.5310788-CDS-H-paniculata_contig23492:3019..3389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23492 3020..3389 -
1691480958.4504552-CDS-H-paniculata_contig23492:3019..33891691480958.4504552-CDS-H-paniculata_contig23492:3019..3389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23492 3020..3389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23492.6339.1

>prot_H-paniculata_contig23492.6339.1 ID=prot_H-paniculata_contig23492.6339.1|Name=mRNA_H-paniculata_contig23492.6339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp
MSVYVSSSIVRVSCLTLIGTTIVLGFAHGPSWSISSERPITKPLSALHES
SPISSSSHAVDSTPTTPAGRVASSQPLSSDRESPENSTRAGFLRRLMSSA
ALACTAGVMVGGGSATSAAVASDGSATYRSPHAFSRKTAAATCRNLAQDE
LFRHQHQRAQTDQYFPPRTVAKGDSPLVIARDGTTESTSESALSGLVAGA
AVSTAKQLLLYPVDTVKVCIFHTLYILLRCHTYCWPKLLLVCCYFATTLY
LLLGITFFSQWTISEIFFWKVRHNRWGRE*
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mRNA from alignment at H-paniculata_contig23492:1898..3413-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23492.6339.1 ID=mRNA_H-paniculata_contig23492.6339.1|Name=mRNA_H-paniculata_contig23492.6339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1516bp|location=Sequence derived from alignment at H-paniculata_contig23492:1898..3413- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGACATGATAGTGTAGGACAGGATGAGTGTATATGTCTCTAGCAGCAT
AGTGCGTGTGTCGTGCCTCACTCTGATAGGCACAACCATAGTATTGGGAT
TTGCTCATGGACCTTCTTGGAGCATCAGCAGTGAGCGACCAATCACCAAA
CCCTTATCTGCCCTCCACGAGAGCAGCCCGATATCATCGTCGAGTCATGC
CGTTGATAGTACACCCACAACGCCGGCAGGACGAGTAGCGTCCAGTCAAC
CTCTTAGCAGCGACAGAGAAAGTCCGGAAAATTCCACAAGGGCAGGCTTC
CTTCGCCGTCTGATGTCCTCTGCGGCGCTGGCGTGCACAGCTGGGGTGAT
GGTCGGAGGAGGATCAGCGACTAGCGCCGCAGTTGCGAGCGATGGTAAAT
AACCAGAGTGATGTGCACTACAGTTGTAGATCAGTACTGTCTGTTGTTCC
AAGCTGCTCAACAGCAAGTATGCTGTGGTATTCGCAAGACTTCGGACAGC
TGGATGCATTTTCAAACGAAGGGACATGGATGATGGGCTGAAAAATTCCG
TTTTGCTGCCAGCCAAGGGATTGTTGTTTGCCGTGAGAACGGATAAAGGG
CTTACCTTGCCACCTTGCCATCGTCGGGTTAAAAATGTAGGTGCCATCGT
GTCTTTATTCTGGACATGGTGCACGAGCTCAGGCTATGACGACCATATAT
TAGAAACTATGAACAGTCTTGATCCAAAACGAACACTAAACAATCACGCA
TGCTTGCGGCAAGGTGAACTGAGCGTCGCCCCGCTACACGCTTCAAGCCT
TAACTAGCGGATTTAATAAGTTAAGTTGCCAAATACGCGTATGATCGTGT
GCAGGTTCAGCGACATATCGTTCTCCTCACGCTTTCAGCCGAAAAACGGC
AGCTGCTACTTGCAGGAACTTAGCGCAGGACGAGCTATTCCGACACCAAC
ATCAGAGGGCTCAAACGGACCAATATTTTCCCCCGCGTACGGTGGCGAAA
GGTGATAGCCCGCTTGTCATAGCCAGGGATGGGACGACGGAGTCGACGTC
GGAGAGCGCCTTGTCTGGTCTGGTCGCCGGAGCGGCTGTGTCAACCGCCA
AACAGCTCCTCCTTTATCCGGTAGACACCGTTAAGGTGTGTATTTTCCAT
ACATTGTACATACTATTGAGGTGTCACACCTATTGTTGGCCAAAACTTTT
GTTGGTGTGTTGTTATTTTGCTACGACCTTATACCTTCTGTTGGGAATCA
CTTTTTTTTCACAATGGACAATTTCGGAAATATTTTTTTGGAAAGTCAGA
CATAATCGTTGGGGTCGTGAATGAAAAAATTGAGCAGTTGAGTACTCGAA
ATACCAGATTTGGAGAATGAGAAGCTAATTCTCGTTTACCTTCTCGACGA
CGGGTACTAGTGCGGAATCTCAGAGCTCAGTCAGTCGCCTATGTGCATCA
ACACACCACCGGGCAGATCACTATCTCAACATCCTTATTTTAATTGCGGT
AATGATGATGACGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig23492:1898..3413-

>mRNA_H-paniculata_contig23492.6339.1 ID=mRNA_H-paniculata_contig23492.6339.1|Name=mRNA_H-paniculata_contig23492.6339.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig23492:1898..3413- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGTATATGTCTCTAGCAGCATAGTGCGTGTGTCGTGCCTCACTCT
GATAGGCACAACCATAGTATTGGGATTTGCTCATGGACCTTCTTGGAGCA
TCAGCAGTGAGCGACCAATCACCAAACCCTTATCTGCCCTCCACGAGAGC
AGCCCGATATCATCGTCGAGTCATGCCGTTGATAGTACACCCACAACGCC
GGCAGGACGAGTAGCGTCCAGTCAACCTCTTAGCAGCGACAGAGAAAGTC
CGGAAAATTCCACAAGGGCAGGCTTCCTTCGCCGTCTGATGTCCTCTGCG
GCGCTGGCGTGCACAGCTGGGGTGATGGTCGGAGGAGGATCAGCGACTAG
CGCCGCAGTTGCGAGCGATGATGAGTGTATATGTCTCTAGCAGCATAGTG
CGTGTGTCGTGCCTCACTCTGATAGGCACAACCATAGTATTGGGATTTGC
TCATGGACCTTCTTGGAGCATCAGCAGTGAGCGACCAATCACCAAACCCT
TATCTGCCCTCCACGAGAGCAGCCCGATATCATCGTCGAGTCATGCCGTT
GATAGTACACCCACAACGCCGGCAGGACGAGTAGCGTCCAGTCAACCTCT
TAGCAGCGACAGAGAAAGTCCGGAAAATTCCACAAGGGCAGGCTTCCTTC
GCCGTCTGATGTCCTCTGCGGCGCTGGCGTGCACAGCTGGGGTGATGGTC
GGAGGAGGATCAGCGACTAGCGCCGCAGTTGCGAGCGATGGTTCAGCGAC
ATATCGTTCTCCTCACGCTTTCAGCCGAAAAACGGCAGCTGCTACTTGCA
GGAACTTAGCGCAGGACGAGCTATTCCGACACCAACATCAGAGGGCTCAA
ACGGACCAATATTTTCCCCCGCGTACGGTGGCGAAAGGTGATAGCCCGCT
TGTCATAGCCAGGGATGGGACGACGGAGTCGACGTCGGAGAGCGCCTTGT
CTGGTCTGGTCGCCGGAGCGGCTGTGTCAACCGCCAAACAGCTCCTCCTT
TATCCGGTAGACACCGTTAAGGTGTGTATTTTCCATACATTGTACATACT
ATTGAGGTGTCACACCTATTGTTGGCCAAAACTTTTGTTGGTGTGTTGTT
ATTTTGCTACGACCTTATACCTTCTGTTGGGAATCACTTTTTTTTCACAA
TGGACAATTTCGGAAATATTTTTTTGGAAAGTCAGACATAATCGTTGGGG
TCGTGAATGAGTTCAGCGACATATCGTTCTCCTCACGCTTTCAGCCGAAA
AACGGCAGCTGCTACTTGCAGGAACTTAGCGCAGGACGAGCTATTCCGAC
ACCAACATCAGAGGGCTCAAACGGACCAATATTTTCCCCCGCGTACGGTG
GCGAAAGGTGATAGCCCGCTTGTCATAGCCAGGGATGGGACGACGGAGTC
GACGTCGGAGAGCGCCTTGTCTGGTCTGGTCGCCGGAGCGGCTGTGTCAA
CCGCCAAACAGCTCCTCCTTTATCCGGTAGACACCGTTAAGGTGTGTATT
TTCCATACATTGTACATACTATTGAGGTGTCACACCTATTGTTGGCCAAA
ACTTTTGTTGGTGTGTTGTTATTTTGCTACGACCTTATACCTTCTGTTGG
GAATCACTTTTTTTTCACAATGGACAATTTCGGAAATATTTTTTTGGAAA
GTCAGACATAATCGTTGGGGTCGTGAATGA
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