mRNA_H-paniculata_contig2346.6332.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2346.6332.1
Unique NamemRNA_H-paniculata_contig2346.6332.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2346.6332.1 vs. uniprot
Match: D7FQB6_ECTSI (Ribosomal_S17_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB6_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 1.610e-104
Identity = 154/165 (93.33%), Postives = 162/165 (98.18%), Query Frame = 1 
Query:  427 DYREAEQHEKAYQKQDGIFIGSKRVLAKKVAKNKGMRFVKNVGLGFKTPKLAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCSPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVAVRKQFRMF 921
            DYREAEQHEKAYQKQD IF+G+KRVL KKVAK+KGMRFVKNVGLGFKTPK A+EGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLH++SKYRRFEKRHKNMTVHC+PCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAV+VRKQFRMF
Sbjct:   27 DYREAEQHEKAYQKQDAIFVGAKRVLGKKVAKSKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVSVRKQFRMF 191
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BLAST of mRNA_H-paniculata_contig2346.6332.1 vs. uniprot
Match: A0A835Z9X9_9STRA (Ribosomal protein S17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X9_9STRA)

HSP 1 Score: 272 bits (696), Expect = 7.310e-86
Identity = 129/165 (78.18%), Postives = 148/165 (89.70%), Query Frame = 1 
Query:  427 DYREAEQHEKAYQKQDGIFIGSKRVLAKKVAKNKGMRFVKNVGLGFKTPKLAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCSPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVAVRKQFRMF 921
            +Y+EAEQ EKAYQKQD +FI +KRV+ KK    KGMRF KN+GLGFKTPKLA  GTYVDKKCPFTG+VSIRGRILKGLV+SAGKM NT VIRRDYLHY++KYRRFEKRHKN+ VH SPC+ NVKEGDI+T+GQCRPLSKT+RFN LEHEPCINT+++V+KQFRMF
Sbjct:    2 EYKEAEQTEKAYQKQDAVFIAAKRVIGKKT--KKGMRFYKNIGLGFKTPKLAISGTYVDKKCPFTGNVSIRGRILKGLVLSAGKMKNTCVIRRDYLHYVTKYRRFEKRHKNLMVHLSPCFPNVKEGDILTVGQCRPLSKTIRFNALEHEPCINTSISVKKQFRMF 164
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BLAST of mRNA_H-paniculata_contig2346.6332.1 vs. uniprot
Match: A0A7S2XWS0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWS0_9STRA)

HSP 1 Score: 265 bits (678), Expect = 3.720e-83
Identity = 130/166 (78.31%), Postives = 145/166 (87.35%), Query Frame = 1 
Query:  424 QDYREAEQHEKAYQKQDGIFIGSKRVLAKKVAKNKGMRFVKNVGLGFKTPKLAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCSPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVAVRKQFRMF 921
            Q+Y+EA+QHEKAYQKQD +FI  KRV+ KK    KGMRF KN+GLGFKTPKLA EGTYVDKKCPFTG+VSIRGRILKGLVIS  KM NTI++RRDYLHYISKYRRFEKRHKNM VH SPC+  +KEGD+VTIGQCRPLSKTVRFNVLEH P +N A+ V+KQFRMF
Sbjct:    3 QEYKEADQHEKAYQKQDAVFIAKKRVIGKK--SRKGMRFYKNIGLGFKTPKLAIEGTYVDKKCPFTGNVSIRGRILKGLVIST-KMKNTIIVRRDYLHYISKYRRFEKRHKNMAVHASPCFDTIKEGDVVTIGQCRPLSKTVRFNVLEHLPSVNQALNVKKQFRMF 165
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BLAST of mRNA_H-paniculata_contig2346.6332.1 vs. uniprot
Match: F0XZW5_AURAN (Ribosomal_S17_N domain-containing protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0XZW5_AURAN)

HSP 1 Score: 252 bits (643), Expect = 6.690e-78
Identity = 124/164 (75.61%), Postives = 144/164 (87.80%), Query Frame = 1 
Query:  430 YREAEQHEKAYQKQDGIFIGSKRVLAKKVAKNKGMRFVKNVGLGFKTPKLAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCSPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVAVRKQFRMF 921
            +REAEQ EKAYQKQD +FIG KR LAKK    KGMR+V+NVGLGFKTPKLA EG+YVDKKCPFTG+VSIRGRILKG+VIS  KM  T+VIRRDYL++  KYRRFEKRHKNM+VHCSPC++NVKEGDIVT+GQCRPL+KTVRFNVL HEP +N ++ V+K FR+F
Sbjct:    7 FREAEQTEKAYQKQDAVFIGRKRALAKK--SKKGMRYVRNVGLGFKTPKLALEGSYVDKKCPFTGNVSIRGRILKGMVIST-KMKRTLVIRRDYLNWCGKYRRFEKRHKNMSVHCSPCFENVKEGDIVTVGQCRPLTKTVRFNVLTHEPAVNQSLNVKKVFRVF 167
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BLAST of mRNA_H-paniculata_contig2346.6332.1 vs. uniprot
Match: A0A7R9U3I9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3I9_9STRA)

HSP 1 Score: 248 bits (632), Expect = 5.530e-76
Identity = 121/178 (67.98%), Postives = 151/178 (84.83%), Query Frame = 1 
Query:  400 PTTDTMGL----QDYREAEQHEKAYQKQDGIFIGSKRVLAKKVAKNKGMRFVKNVGLGFKTPKLAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCSPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVAVRKQFRMF 921
            PT + +G     ++YREAEQ EKAYQKQD +F+G+KR L + V K KGMR+VKN+GLGFKTP+ A EG YVD+KCPFTG+VSIRG+ILKG+VIS  KMT T+V+RRDYLH++ KY+R+EKRHKNMTVHCSP + NVK GD+VT+GQCRPLSKT+RFNVL HEP +N +V+V+KQFR+F
Sbjct:   12 PTKEAVGSIMAPKNYREAEQTEKAYQKQDAVFVGTKRSLVR-VGK-KGMRYVKNIGLGFKTPQRAIEGNYVDRKCPFTGNVSIRGKILKGIVIS-NKMTRTVVVRRDYLHFVRKYKRYEKRHKNMTVHCSPAFTNVKPGDVVTVGQCRPLSKTIRFNVLVHEPAVNQSVSVKKQFRVF 186
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BLAST of mRNA_H-paniculata_contig2346.6332.1 vs. uniprot
Match: A0A7S4WCA2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WCA2_9DINO)

HSP 1 Score: 243 bits (619), Expect = 2.350e-74
Identity = 126/170 (74.12%), Postives = 141/170 (82.94%), Query Frame = 1 
Query:  415 MGLQDYREAEQHEKAYQKQDGIFIGSKRVLAKKVAKN-KGMRFVKNVGLGFKTPKLAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCSPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVAVRKQFRMF 921
            MGL+ Y+EAEQ EKAYQKQDG+FI  K    K  AKN K MR+ KNVGLG KTPK A EGTYVDKKCPFTGDV+IRGRILKGLVIS  KMT TI++RRDYLHYI KYRR+EKRHKN+ VHCSP +  V EGD+VTIGQCRPLSKTVRFNV+EH P +N A+ V+KQFRMF
Sbjct:    1 MGLE-YKEAEQTEKAYQKQDGVFIARKN---KAGAKNPKPMRWTKNVGLGIKTPKNAVEGTYVDKKCPFTGDVAIRGRILKGLVIST-KMTRTIIVRRDYLHYIRKYRRYEKRHKNVAVHCSPAFDTVSEGDVVTIGQCRPLSKTVRFNVIEHLPTVNKAINVKKQFRMF 165
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BLAST of mRNA_H-paniculata_contig2346.6332.1 vs. uniprot
Match: A0A7S1XVW4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVW4_9STRA)

HSP 1 Score: 238 bits (607), Expect = 1.480e-72
Identity = 114/169 (67.46%), Postives = 143/169 (84.62%), Query Frame = 1 
Query:  415 MGLQDYREAEQHEKAYQKQDGIFIGSKRVLAKKVAKNKGMRFVKNVGLGFKTPKLAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCSPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVAVRKQFRMF 921
            M  ++YREAEQ EKAYQKQD +F+G+KR L +  +  KG+R+VK++GLGFKTP+ A  G+YVDKKCPFTG+VSIRG+ILKG+VIS  KM  TIV+RRDYLH++ KY+R+EKRHKN+T HCSPC+ NVK GD+VTIGQCRPL+KT+RFNVL HEP  N +V V+KQFR+F
Sbjct:    1 MAPKNYREAEQVEKAYQKQDAVFVGTKRSLVR--SGKKGIRYVKSIGLGFKTPETAISGSYVDKKCPFTGNVSIRGKILKGVVIS-NKMKRTIVVRRDYLHFVRKYKRYEKRHKNVTAHCSPCFVNVKPGDVVTIGQCRPLAKTIRFNVLTHEPSTNQSVNVKKQFRVF 166
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BLAST of mRNA_H-paniculata_contig2346.6332.1 vs. uniprot
Match: A0A7S0L9L5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9L5_9EUKA)

HSP 1 Score: 238 bits (606), Expect = 1.950e-72
Identity = 120/165 (72.73%), Postives = 139/165 (84.24%), Query Frame = 1 
Query:  427 DYREAEQHEKAYQKQDGIFIGSKRVLAKKVAKNKGMRFVKNVGLGFKTPKLAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCSPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVAVRKQFRMF 921
            D++EA+Q EKAYQKQD IFIG KRVL KK +K KGMR+ KN+GLGFKTP  A EG+YVDKKCPFTG+VSIRGRILKG+V+S  KM  T+VIRRDYL YISKYRRF K+H NM+VHCSP + NV EGDIVT+GQCRPL+KTVRFNV+EH P  N AV V+K FR+F
Sbjct:    2 DFKEADQTEKAYQKQDAIFIGRKRVLGKKSSK-KGMRYYKNIGLGFKTPTEAIEGSYVDKKCPFTGNVSIRGRILKGMVVS-NKMKRTVVIRRDYLKYISKYRRFCKKHTNMSVHCSPAFLNVGEGDIVTVGQCRPLAKTVRFNVIEHFPATNKAVNVKKMFRVF 164
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BLAST of mRNA_H-paniculata_contig2346.6332.1 vs. uniprot
Match: A0A4D9CZU0_9STRA (Ribosomal_S17_N domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZU0_9STRA)

HSP 1 Score: 232 bits (591), Expect = 4.930e-70
Identity = 113/166 (68.07%), Postives = 136/166 (81.93%), Query Frame = 1 
Query:  430 YREAEQHEKAYQKQDGIFIGSKRVLAKKVAKNK--GMRFVKNVGLGFKTPKLAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCSPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVAVRKQFRMF 921
            YREA+QHEKAYQ Q+G+F+  K    K+ +K    G R+ + VGLGFKTPK AK GTYVDKKCPFTG VSIRGRILKG+V+S  KM  T++IRRDYLH++SKY RFEKRHKN+  HCSP +  VKEGDIVT+GQCRPLSKTVRFNVL+HEP IN A++++KQFR+F
Sbjct:   12 YREADQHEKAYQVQNGVFMFGKSSSRKEGSKRSKHGARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLST-KMNRTVIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176
[Close]
BLAST of mRNA_H-paniculata_contig2346.6332.1 vs. uniprot
Match: A0A7S2S9B4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S9B4_9STRA)

HSP 1 Score: 226 bits (577), Expect = 4.360e-68
Identity = 115/166 (69.28%), Postives = 136/166 (81.93%), Query Frame = 1 
Query:  427 DYREAEQHEKAYQKQDGIFIGSKRVLAKKVAKNKGMRFVKNVGLGFKTPKLAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCSPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEP-CINTAVAVRKQFRMF 921
            +Y+EAEQ EKAYQKQD IFIG KRVL+K+  + KG RF KNVGLGFKTPK A EG +VDKKCPFTG+VSIRGR++K +VIS  KM NT+++RRDYL ++ KYRRFEKRH NM  H SP ++NVKEGDIV+IGQCRPLSKTVRFNVLE E    + AV ++K FRMF
Sbjct:    5 EYKEAEQTEKAYQKQDAIFIGKKRVLSKQ--RGKGFRFYKNVGLGFKTPKKAIEGNFVDKKCPFTGNVSIRGRVMKAMVIST-KMKNTVIVRRDYLRFVKKYRRFEKRHTNMAAHLSPAFENVKEGDIVSIGQCRPLSKTVRFNVLEVEAGASDRAVNIKKSFRMF 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2346.6332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB6_ECTSI1.610e-10493.33Ribosomal_S17_N domain-containing protein n=1 Tax=... [more]
A0A835Z9X9_9STRA7.310e-8678.18Ribosomal protein S17-domain-containing protein n=... [more]
A0A7S2XWS0_9STRA3.720e-8378.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0XZW5_AURAN6.690e-7875.61Ribosomal_S17_N domain-containing protein n=3 Tax=... [more]
A0A7R9U3I9_9STRA5.530e-7667.98Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4WCA2_9DINO2.350e-7474.12Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S1XVW4_9STRA1.480e-7267.46Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0L9L5_9EUKA1.950e-7272.73Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A4D9CZU0_9STRA4.930e-7068.07Ribosomal_S17_N domain-containing protein n=3 Tax=... [more]
A0A7S2S9B4_9STRA4.360e-6869.28Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2346contigH-paniculata_contig2346:1081..7419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.9
Seed ortholog evalue3.7e-85
Seed eggNOG ortholog2880.D7FQB6
Preferred nameRPS11
KEGG koko:K02949
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0186@1,KOG1728@2759
Ec32 ortholog descriptionRibosomal protein S17
Ec32 orthologEc-01_006720.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons7
Model size1691
Cds size510
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.6362414-UTR-H-paniculata_contig2346:1080..18471622929665.6362414-UTR-H-paniculata_contig2346:1080..1847Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2346 1081..1847 -
1691480957.9549627-UTR-H-paniculata_contig2346:1080..18471691480957.9549627-UTR-H-paniculata_contig2346:1080..1847Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2346 1081..1847 -
1622929665.7628703-UTR-H-paniculata_contig2346:6854..72411622929665.7628703-UTR-H-paniculata_contig2346:6854..7241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2346 6855..7241 -
1691480958.040379-UTR-H-paniculata_contig2346:6854..72411691480958.040379-UTR-H-paniculata_contig2346:6854..7241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2346 6855..7241 -
1622929665.7770135-UTR-H-paniculata_contig2346:7392..74191622929665.7770135-UTR-H-paniculata_contig2346:7392..7419Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2346 7393..7419 -
1691480958.0500658-UTR-H-paniculata_contig2346:7392..74191691480958.0500658-UTR-H-paniculata_contig2346:7392..7419Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2346 7393..7419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.6520605-CDS-H-paniculata_contig2346:1847..18831622929665.6520605-CDS-H-paniculata_contig2346:1847..1883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 1848..1883 -
1691480957.9712367-CDS-H-paniculata_contig2346:1847..18831691480957.9712367-CDS-H-paniculata_contig2346:1847..1883Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 1848..1883 -
1622929665.6714492-CDS-H-paniculata_contig2346:2166..23171622929665.6714492-CDS-H-paniculata_contig2346:2166..2317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 2167..2317 -
1691480957.9848266-CDS-H-paniculata_contig2346:2166..23171691480957.9848266-CDS-H-paniculata_contig2346:2166..2317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 2167..2317 -
1622929665.6888907-CDS-H-paniculata_contig2346:2481..25641622929665.6888907-CDS-H-paniculata_contig2346:2481..2564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 2482..2564 -
1691480958.002058-CDS-H-paniculata_contig2346:2481..25641691480958.002058-CDS-H-paniculata_contig2346:2481..2564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 2482..2564 -
1622929665.7141697-CDS-H-paniculata_contig2346:3046..31781622929665.7141697-CDS-H-paniculata_contig2346:3046..3178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 3047..3178 -
1691480958.0120835-CDS-H-paniculata_contig2346:3046..31781691480958.0120835-CDS-H-paniculata_contig2346:3046..3178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 3047..3178 -
1622929665.7267811-CDS-H-paniculata_contig2346:6255..63301622929665.7267811-CDS-H-paniculata_contig2346:6255..6330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 6256..6330 -
1691480958.0209954-CDS-H-paniculata_contig2346:6255..63301691480958.0209954-CDS-H-paniculata_contig2346:6255..6330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 6256..6330 -
1622929665.7403998-CDS-H-paniculata_contig2346:6821..68541622929665.7403998-CDS-H-paniculata_contig2346:6821..6854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 6822..6854 -
1691480958.0306034-CDS-H-paniculata_contig2346:6821..68541691480958.0306034-CDS-H-paniculata_contig2346:6821..6854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2346 6822..6854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2346.6332.1prot_H-paniculata_contig2346.6332.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2346 1848..6854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2346.6332.1

>prot_H-paniculata_contig2346.6332.1 ID=prot_H-paniculata_contig2346.6332.1|Name=mRNA_H-paniculata_contig2346.6332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MGLQDYREAEQHEKAYQKQDGIFIGSKRVLAKKVAKNKGMRFVKNVGLGF
KTPKLAKEGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYL
HYISKYRRFEKRHKNMTVHCSPCWQNVKEGDIVTIGQCRPLSKTVRFNVL
EHEPCINTAVAVRKQFRMF*
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mRNA from alignment at H-paniculata_contig2346:1081..7419-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2346.6332.1 ID=mRNA_H-paniculata_contig2346.6332.1|Name=mRNA_H-paniculata_contig2346.6332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6339bp|location=Sequence derived from alignment at H-paniculata_contig2346:1081..7419- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACAGGGCACTGACTGTCAGCACTAGGTAAGAGGTTGATACTGCAGAGT
CGTATGAGGTGTGTATGTACGCTGATCGTGCTCTCGCTGAGGGATAGGCC
ACAGACATTAATGTGCGCAATACTTGCGTTGAAGTCACATCAATGCTTCT
GTCCATCCCCTGAAATGTCTGTGGATAGGCGACATTTGATGGCCTGCTTA
GTTGGATGATGAGAGGGTGACTGCTGGCCTTGGAGCAACGACAGCACTCA
GCACTGTGTTGTCATGCATCGGCGCTGTCTGTTTCTGACAAAGTTTGGAA
CTGCAGTTATGGAAGGAGAGAAGATGCTCAACAATGTCGTTCTTGAGTAC
GAACCCCTTACCCGAGACTGTGGAGTACGGTCCTCTGTAGTCACAGATCT
CGGTCCATGTAGACCCTGCGGTGTGGACGTCTTTTACCACACTTGCAGTC
AAGTGAAAGTAGGGACCTTGATACCTGCTAGTAGTCGTAGTGCTCACTTA
TTCCATTACCCCATTCCCTATTTCATGTTTTGGCGTTGTGCGATGTCTGT
CCGACCACAGACACCATGGGGCTTCAGGACTACCGGGAGGCGGAACAGGT
GAGTCTTCGAACTTGTAGGCGTCATTGTATTAATACTCACTCGAGGCCGG
TCACACTGATTTTCTCATGGTCCTTGTCAACAGCACAAATCTTGTATGTC
ATGTCTCGTGTTTGTATACTGACCATACTCAACTGTAGGTGCAGTTCAAG
GAGAATGTGGACAAGTTTAAATCATGACCTTTTGCCTCCTGTTCGTGTCG
ATATAGCCGTGTAGATGCAGCATGTTGACGGAAGACTGTAGACGACAATG
TCGTCTGTAACGTACACTTCGTCTACTATTGGGTGACACATTCGTGAAAA
ACAGTGCGACAGGTGCTTGTGGTAATATGCTCGCTATTTATATCGAACAA
GAAATATAGGCGTAATCATGGGTAAAACTGTATATAAGCTGTGAAGGGTA
TATACAGTTGACCAAGATATGATTTAACATCCCAATTTATTCTTGTGCTC
TTGTGTTCACCAATATGGATCTGTGGCGTGGGCCAACAGCATGAGAAGGC
GTACCAGAAGCAGGATGGCATTTTCATAGGATCCAAGCGCGTTCTCGCGA
AGAAGGTTGCTAAGGTACGATTTATCTACATGTTTCATGGCCTGTTTGTG
GAAGTTCGGAGATAGTACAAGTACTTCGAACGAGTCAATGCGAGGATTAA
GCTATTTTTGGATAATTTAGTCAAGCCATCATATGGATGTTAGCAGGCAT
GGAGCAACTCTTTGAAGGAGTCGACCCTAATTTAAAGCCACCGGATGTGT
ACGGGGTCGGAGCGAAAACCAACGAACACTTTGTATGATTCGGAAATCAA
ATTGCTCTCGATGGTAGTTGAAGGGATCGTGTGTCTATTATTCGGCTTCG
TCAAAATATATAATCAGGTGATGTCGGTTCACGAAGTTGCAGGTGCGAAG
CGTTGGGCGTAAAAAATTAAGTTTTGACGCTAAACGTTGACGAAGCAACT
ATACGGACCTTCATAAATTGGGAGCTGTTGTGAGATATACTCGCCTTGGT
TGTTTGGGTCGAGCCCCCTTTCATTGTGTGCCCGACGAGTGTGTCGGTGT
CGTTAACCGGCCGTGTCGAAATTGCCCCTGGTGCATTCCTTCAAAATAAG
CTCGAGTGTGAAACGCCATGTATTGGCAGTAAATGTTTTTGACTTGAAAC
TATCCTTTTCGAATAACGTTCCGAGTACGAGTCTAGTCGTTTATGACACC
GTGAAAGTAAAGATGAGTTCGTGTTTGCAACTCGGTAACTTGCGACAAAC
TGAACGCACAAATGAAAGGCGAACGGTGTTGCTCTGTACCAAGTCCAACA
AGACGTAGTTCATGTCTGGGCGATGATGCAACGAAGAAACGAACGCTAGT
TCTCCTGACCAGTTTCGTGCTATCTGAGGATCCAACCCTTGGCTGTCTGA
GCCTAGTTCATCAATTTTTAAGGAACATGTTGTCGACGTGTCGTATCTTC
GTATAATAGCACGATGAACGGATGACTGGACGTTGACGAGATACTGGAAT
GGAAAGTAATTTCTGACCAGCCCCAAGCTGTCTGACGATTCAAACCTTGG
CTGTCCGAGTCTAGGAGCCCCTACGTCTCCCATGTTCACTCAGCGAAAAA
CACCCAATGCGCGGATGCCTTGAAGGTCATCTTGCTAGCCCTGTTGGAAG
GTGGATTAAGTGAAAAGTAACAAACCAACATAGTTTGTATACAGAATAAA
GCCTAAGAAAAGTATCATGGTCGACCGAGCTGCGTTGTAGATGATCAATT
ACGAAATAATATTCCGTATATCCCGTTTTTGCTTGTAGGGCCGAAAGAAC
TTCGAAATGTTGACCTCTTCACTTTTCCGGGAATGTCGAGAAGTGTTCTG
TGTCGGGTGGTGCAGTCCTTGAATGAGAAAATCTGGTAACTACGGTGAAA
ATAAGACCTTCTGATAGGGTTCAACTGCTTGAGGACGTGCTCATTCTGGT
CCTTGATGGCGATGTGTATCTTATACCTCGTACTGTATTCGAGTATGGGT
CAACGTCTCGATTGATCATGGGCTGTTGACTTATTCTTGACCTCGACATC
CTTCCGTGATGGAAAAGATGTCATGTTGGAAGAGTTCAGTCCTTCATGGT
TCAGAAACGCATTTGAGCTCGCCGCATATGTTGTGAAGTTGCAGTATAAG
ATAATGACCATTTCAAGTGAAAGGACTAGAGTTTCTGACCATTTCAAGTG
AAAGGACTAGAGTTTCTGACCATTTCAAGTGAAAGGACTAGAGTTTCTGA
CCATTTCAAGTGAAAGGACTAGAGTTTCTGACCAGTTTCGACTGTTTGAA
GACAGAGTGCTTTTCGTCCGAGTCTGACCCCCCTCAATTGATATCTTTCT
TGGAGCCCACGTTGTTTATGGTAACTAGTATTGCATAGAGAAGACGATGA
CGATTTCAAGTGAAAGGACTAGAGTTTCTGACCAGTTTCGACTGTTTGAA
GACAACGTGCTTTTCGTCCGAGTCTGACCCCCCTCAATTGATATCTTTCT
CGGAGCCCACGTTGTTTATGGTAACTAGTATTGCATAGAGAAGACGATGA
CGATTTCAAGTGAAAGGACTAGAGTTTCTGACCAGTTTCGACTGTTTGAA
GACAACGTGCTTTTCGTCCGAGTCTGACCCCCCTCAATTGATATCTTTCT
TGGAGCCTACGTTGTTTATGGTAACTAGTTGCATAGAGAAGACGATGACG
ATTTCAAGTGAAAGGACTAGAGTTTCTGATCAGTTTCTTCTGTTTGAAGA
CAAAGTGCTTTTCGTCCGAGTCTGACCCCCCTCAATTGATATCTTTCTCG
GAGCCTACGTTGTATATGGTAACTAGTTGCATAGAGAAGACGATGACGAT
TTCAAGTGAAAGGACTAGAGTTTCTGATCAGTTTCTTCTGTTTGAAGACA
AAGTGCTTTTCGTCTGAGTCTGACCCCCGTCAATTGATATCTTTCTCGGA
GCCTACGTTGTATATGGTAACTAATTGCATAGAGAAGATGACGATTTCAA
GTGAAAGGACTAAAGTTTCTGACCAGTTTCTTCTGTTTGAAGACACGGCG
CTTTTCGTCCGAGTCTGACCCCCGTCAATTGATATCTTTCTCGGAGCCTA
CGTTGTATATGGTAACTAATTGCATAGAGAAGATGACGATTTCAAGTGAA
AGGACTAAAGTTTCTGACCAGTTTCTTCTGTTTGAAGACACGGCGCTTTT
CGTCCGAGTCTGACCCCCGTCAATTGATATCTTTCTCGGAGCCTACGTTG
TATATGGTAACTAGTTGCATAGAGAAGATGACGATTTCAAGTGAAAGGAC
TAGAGTTTCTGATCAGTTTCGACTGTTTGAAGACAACGTGCTTTTCGTCC
GAGTCTGACCCCCCCTCAATTGATATCTTTCTTGGAGCCCATGTTGTATA
TGGTAACATAGCATTGCATAAAGAAGACAACGACGAATTCAAGTGGAAGG
ACTAGAGTTTCTGATCAGTTTCGACTGTTTGAAAACTACGGGCTTTTCGT
CCGAGGTTCATGCAGTTCGCGTTACTTTTGATTGTAAAATCCATAGAGTA
TTTTTCGGTTGGGTGCATGGATATCGTGAAGTGATTTCTTACGTGCTTAT
TTACTTGTTTTTGCTGCGTCACGTGCTTGCGGAATTCCCAGAACAAGGGC
ATGCGTTTCGTGAAAAACGTGGGCCTGGGGTTCAAGACGCCGAAGTTGGC
GAAGGAAGGCACGTACGTGGACAAGAAGTGCCCATTCACTGGCGATGTTT
CCATCCGCGGTCGTATCCTCAAGGTGTGTTACTTGAGGTAGATGCAGTCA
ACATTAAATCTGAGGGGTGGTTGACGATCGCGATGATTCCATGAGATGAG
CCATAGGTGTGAGCTTTGGTTTCGAGGGAGAAGTGGATGCGGTCAACACG
CGGGAAGCGTGGACTGGTCGATTCATCACCAAACACGGAAAGACGGTGAT
GGCCTACAAAAAGTGGAGGCATGTGCCTTATTTTCCTTTTGTTGACTCGG
GGGGAGTTGATCTGAACAGTAATTTGAATATCTGATGTTACCGTTAGCGT
CCGTTTTCACAAGGAATTCCGCAGCGGAGGAGGCCATGAGTTGGACACAG
GCGATGGATATAAAATTCTCATCGAACCTCCACTAGAAGATATGCCACAA
AGTGATTTACCTTAGCATAATGACACGCACGAAGACACGTTGTTGACGAT
GTACTCTTACAATACCCTGTTTCACATGTCTACGCGCTTCGTGTCAACCG
CGTAGGGTTTAGTGATTTCCGCGGGGAAGATGACCAACACCATCGTCATT
CGCCGTGATTACCTTCACTACATCTCGAAGTATCGCAGGTATGGAGAAAC
GAATTACTGGGGCTGATTTTATAGAGTGTCGAATGGAACGAATGAATATT
TCAGTCGATCGTTTCTCAGGTCGACTTCATATCTAGAAACTGATGGATAT
TTTGAATACTCGAGTTTGTTCGTCCTTTCTCTTATGGTGTGCTTGTGGCC
AGATTTGAGAAACGCCACAAGAACATGACAGTCCATTGCTCACCCTGCTG
GCAAAATGTGAAGGAGGGGGACATTGTCACGATCGGACAATGCCGGCCCT
TGTCGAAGACCGTGCGCTTCAACGTCCTTGAACACGAACCCTGCATAAAC
ACGGTACGTACTGGCATGGTGTTGCACCAACGTTGAACAGATGAAGAACA
AAGTACTTCGCGCTTATATATTTTGTGGCTTTAGCACTGATGTGGTGGGG
AATATCCGGTAGACTTTGGTCAAAATATGAGTGCGAACCTTTTTCAAACG
GTAAGCGATAATTGTCAGCGAAAGTGTAGAAGCAACACATGGTGTTGATG
AAATATGGCGTTGATTATTTCGCGTATGTGTTGATTTTGAACGTCCCGTG
TCGCGTGTAATACGTTTATTTTGTTGCAATTTACAGGCGGTGGCAGTGCG
CAAGCAGTTCCGGATGTTTTGAAGCTTCATGGTGTTGTGCAAGGTTGGAG
TGGAGCTGTATCTAGCTGACAGAAGAGCTTGTCGTGGATCTGGTTGCCGT
ATCCTTCCGATATTCTCGTAGAGTGTAGTGCTCTGGAGATGGTAATGCTT
AGCTGTCCGCCGACGTGCCACTGCATCAGAAGTCATGGGCGTCGAGAGCG
AAAGGAAACTATCGAAATATTACCTGGTGCCCCGTCAAAAGAAGTAACAA
AAAAAGGATCACGTGCGTCTCGTCTTGACAATGCCGTCAGTACCACTGTC
AGGCCGGGTGTGAGTGGCTTTTCGTTTGGTCGGGGGGCAGTTATTCTTGA
GGGGGTAGGAAATACGCCCTAGTAAATCTGTCCTCGTGGTCTCATGGATT
TTTTCCTGAGCTCGCTCGTGATCCAGGCAACCCTTGCCACGAATATCTCA
TCTTTGTGAACCCCACTGGTGACATTTTGAACCTTCCCCATCAATACGAG
GATATAAACTAGGCAAGTGCTACTACGGTGAGAAGTCGCGAATAATTGGA
GCGAAGGATATGAGTCCAGTAGGGTCAATCACGCGGAGGAAATTGGACAT
GAGCTGAAATCATAAGATCTCTTGAACGATGTGGAATTATCAATCCCAAC
TCACATTGTGGAGAAAGAAAGAACGCACGGGAGAAATATTAGCGACATCT
TACACACCCAATGAAAAAATGGAAATAATTGAGCCTACTAATGAGCATGG
AGGAATAAAAAAATAAAACACCATCTCACAAAAAATGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig2346:1081..7419-

>mRNA_H-paniculata_contig2346.6332.1 ID=mRNA_H-paniculata_contig2346.6332.1|Name=mRNA_H-paniculata_contig2346.6332.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig2346:1081..7419- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCTTCAGGACTACCGGGAGGCGGAACAGATGGGGCTTCAGGACTA
CCGGGAGGCGGAACAGCATGAGAAGGCGTACCAGAAGCAGGATGGCATTT
TCATAGGATCCAAGCGCGTTCTCGCGAAGAAGGTTGCTAAGCATGAGAAG
GCGTACCAGAAGCAGGATGGCATTTTCATAGGATCCAAGCGCGTTCTCGC
GAAGAAGGTTGCTAAGAACAAGGGCATGCGTTTCGTGAAAAACGTGGGCC
TGGGGTTCAAGACGCCGAAGTTGGCGAAGGAAGGCACGTACGTGGACAAG
AAGTGCCCATTCACTGGCGATGTTTCCATCCGCGGTCGTATCCTCAAGAA
CAAGGGCATGCGTTTCGTGAAAAACGTGGGCCTGGGGTTCAAGACGCCGA
AGTTGGCGAAGGAAGGCACGTACGTGGACAAGAAGTGCCCATTCACTGGC
GATGTTTCCATCCGCGGTCGTATCCTCAAGGGTTTAGTGATTTCCGCGGG
GAAGATGACCAACACCATCGTCATTCGCCGTGATTACCTTCACTACATCT
CGAAGTATCGCAGGGTTTAGTGATTTCCGCGGGGAAGATGACCAACACCA
TCGTCATTCGCCGTGATTACCTTCACTACATCTCGAAGTATCGCAGATTT
GAGAAACGCCACAAGAACATGACAGTCCATTGCTCACCCTGCTGGCAAAA
TGTGAAGGAGGGGGACATTGTCACGATCGGACAATGCCGGCCCTTGTCGA
AGACCGTGCGCTTCAACGTCCTTGAACACGAACCCTGCATAAACACGATT
TGAGAAACGCCACAAGAACATGACAGTCCATTGCTCACCCTGCTGGCAAA
ATGTGAAGGAGGGGGACATTGTCACGATCGGACAATGCCGGCCCTTGTCG
AAGACCGTGCGCTTCAACGTCCTTGAACACGAACCCTGCATAAACACGGC
GGTGGCAGTGCGCAAGCAGTTCCGGATGTTTTGAGCGGTGGCAGTGCGCA
AGCAGTTCCGGATGTTTTGA
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