mRNA_H-paniculata_contig23425.6326.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23425.6326.1
Unique NamemRNA_H-paniculata_contig23425.6326.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23425.6326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23425contigH-paniculata_contig23425:1676..3291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size169
Cds size141
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23425.6326.1prot_H-paniculata_contig23425.6326.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23425 1702..3291 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.0917056-UTR-H-paniculata_contig23425:1675..17011622929665.0917056-UTR-H-paniculata_contig23425:1675..1701Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23425 1676..1701 +
1691480957.7361653-UTR-H-paniculata_contig23425:1675..17011691480957.7361653-UTR-H-paniculata_contig23425:1675..1701Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23425 1676..1701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.1127229-CDS-H-paniculata_contig23425:1701..17141622929665.1127229-CDS-H-paniculata_contig23425:1701..1714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23425 1702..1714 +
1691480957.7468462-CDS-H-paniculata_contig23425:1701..17141691480957.7468462-CDS-H-paniculata_contig23425:1701..1714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23425 1702..1714 +
1622929665.1266518-CDS-H-paniculata_contig23425:3163..32911622929665.1266518-CDS-H-paniculata_contig23425:3163..3291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23425 3164..3291 +
1691480957.756615-CDS-H-paniculata_contig23425:3163..32911691480957.756615-CDS-H-paniculata_contig23425:3163..3291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23425 3164..3291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23425.6326.1

>prot_H-paniculata_contig23425.6326.1 ID=prot_H-paniculata_contig23425.6326.1|Name=mRNA_H-paniculata_contig23425.6326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MLPTGANLTIQVLHETILDILKRQANGVPLPRRLYLQMDNCGRENKN
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mRNA from alignment at H-paniculata_contig23425:1676..3291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23425.6326.1 ID=mRNA_H-paniculata_contig23425.6326.1|Name=mRNA_H-paniculata_contig23425.6326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1616bp|location=Sequence derived from alignment at H-paniculata_contig23425:1676..3291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGACAGTGGTGCACCGCCATGACGTATGCTGCCCACAGGTACCTCCTCG
CGCTGAACTGCTACAAAATACTGCACTCTAATGGTCTCAAGCTCCCCTTG
TTGTATATACTTTCCCTGTTCCTTTTCTCCTCAAGAATGTAGGTCGGTGG
CGACAAGTCTACATGAATGCCAAGTCTATAGATAACCTAAAGATTCGAAA
TTGATCGTCAGGGTACAGCCTATTTCGAATATAACCCAGAATCTCCATTT
CAAAGTTGGATCTCAATCTCACCACTATACTGTTATATCAAAAATAAATA
ATTTTTATCACTATATCGCTTCTATCCAACCGGGTAACCAAATTTCGCTA
CCTGCGAAACTAGCAGGACTGTCTTTAGAGGCTAAAGGTAGATCAAAACC
GTATAGAGCTTTTCCCGATGCTGCTTGAATAAATTGCGCAAAAACAGGTT
CAACTAATATTTGTTTTTCAGGTTGACCAAATTCTACTACATTATCATTA
TGAATATATAATCCCAATGTATGAAAACCTAAAAATAAACTAACCGAACT
TAAACGAGAAATAATTGCTTTTTTATGTTCTAGCATTCTTGCTAAAACAT
TTTTTTCTTAATTTCTCGAACCAAAAATATTGCACCATGAGCAAATGCTC
CCACCATTAAAAATCCTGCTATATATTGGTGATGAGTATATAAAGCATCT
TGAGTTGTAAAATCTTCTGCCATAAAAGCACCTGCTTCTTCTAATAATTT
GTTTGCTTTTTCAGTAGTGGCTTTACTTTATCCTTCTTTTAAAACTCTTG
GGGTATTTTCAACAACTTCTTTTGCTTCTTTTAATTCCAATTCAGTTACA
GATCAAAGGACTTTTAGAATGGAGATCCTTTTATCTTTTGGAATTTCATC
TAAACTTAATTCAATTTCTGTTTTTTTTACAACAGAATCGTCAGATTTTA
CAGCTCCAGCACCACTCATCATCATAACTCCACCCCCAGTCGAAGAATCA
AGATTAAATGTTTCTTCTATGGCTTTAACTAAGTCAGCCGCTTCTAATAA
TGTTGAAGTTTTAATTCGCCGATTAGTTAGATCGACCTTATTTATTTTCT
ACTGGATCAGTAATTCGTAAATTTCCTAGAGATTTTGTTAAAAGTCACGA
CATTCTTGGTCAATTATTATATGAATGTTTTAAAGTAGGTGGAATTGTTC
AAGGTTTACCTAAAGTTGAACAAATCTTAGAAGCTCGTAACCCAAAAAAT
GATGCTTTTTTAGCTACAACTAGAATTATTAACAATATTAATTATACTTC
AAGCCAAATTCTGATATCAATAATGCCTTCGAATCACTTTGAAGAATATT
CATTAATGCGTTCTTCAAAATTATTAGTTAAACAATTTCAGTTTATTAAT
GTAGGAGAATCCTTAACAGAAGGTCCAATAAATCCTCAGTCTCATACATA
TATTTTTTCAATATATTTGCCCTCCCTTGCTTGTGTAGGTGCCAACCTGA
CGATCCAAGTACTCCATGAGACTATCCTTGATATCTTGAAGCGACAAGCC
AATGGGGTACCGCTGCCTCGCCGTCTGTATCTGCAAATGGATAACTGCGG
CCGTGAGAACAAGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig23425:1676..3291+

>mRNA_H-paniculata_contig23425.6326.1 ID=mRNA_H-paniculata_contig23425.6326.1|Name=mRNA_H-paniculata_contig23425.6326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig23425:1676..3291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCCCACAGATGCTGCCCACAGGTGCCAACCTGACGATCCAAGTAC
TCCATGAGACTATCCTTGATATCTTGAAGCGACAAGCCAATGGGGTACCG
CTGCCTCGCCGTCTGTATCTGCAAATGGATAACTGCGGCCGTGAGAACAA
GAACGTGCCAACCTGACGATCCAAGTACTCCATGAGACTATCCTTGATAT
CTTGAAGCGACAAGCCAATGGGGTACCGCTGCCTCGCCGTCTGTATCTGC
AAATGGATAACTGCGGCCGTGAGAACAAGAAC
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