prot_H-paniculata_contig2342.6325.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2342.6325.1
Unique Nameprot_H-paniculata_contig2342.6325.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length188
Homology
BLAST of mRNA_H-paniculata_contig2342.6325.1 vs. uniprot
Match: D7G636_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G636_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 7.620e-53
Identity = 95/161 (59.01%), Postives = 116/161 (72.05%), Query Frame = 0
Query:   36 RYFAVSGRPDEYAALVRQWTSRGYAGERDLFLCRAVLHTLSCNRTDDA-VALSAAVKEALLQDGG---------GNAAAVESPLCHFTSFVVELCQARQKAGAPSREMVAAFLKLQEVYDRSINRDPHLDEMLSRIGHVQFNIEPPKAEGLMGMIGQLMGG 186
            RYFAVSG P EY+ALV+QW ++GY GE DLF+CRAVLHTLS +RT+DA V L A     L +D           G  A +ESPL HFT FVVELCQ +  AG+PS+EM AAF KL+EVY  S+ RD +LD++L+RIG V F I+PP+  GLMGM+GQLMGG
Sbjct:  150 RYFAVSGCPTEYSALVKQWAAKGYPGETDLFICRAVLHTLSYDRTEDAGVLLDACASWVLGEDAASSPGSEASSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVNLDDLLNRIGDVHFGIKPPQPGGLMGMLGQLMGG 310          
BLAST of mRNA_H-paniculata_contig2342.6325.1 vs. uniprot
Match: A0A7S2ANH1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANH1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 7.630e-10
Identity = 45/140 (32.14%), Postives = 75/140 (53.57%), Query Frame = 0
Query:   36 RYFAVSGRPDEYAALVRQWTSRGYAGERDLFLCRAVLHTLSCNRTDDAVALSAAVKEALLQDGGGNAAAVESPLCHFTSFVVELCQARQKAGAPSREM-VAAFLKLQEVYDRSIN-RDPHLDEMLSRIGHVQFNIEPPKA 173
            ++FA++  P EYAA ++ W ++G+A E+DLF  RAVLH L+    +   A +A + +AL        A   +P+ +  S ++EL     K     RE    +F  L+E+Y   +  RD     +  R+G VQF+ +PP++
Sbjct:  127 KHFALANIPQEYAASLKVWATKGFASEKDLFFARAVLHMLTIPGKE---AQAAQLYQAL-------GAPSMTPVDNIVSMLLELLDMTTKGHRVGREGGKQSFAVLREMYGPILRLRDHRTLSLFDRVGQVQFHWDPPRS 256          
BLAST of mRNA_H-paniculata_contig2342.6325.1 vs. uniprot
Match: A0A061S2K2_9CHLO (Golgi to er traffic protein 4 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S2K2_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 1.330e-8
Identity = 52/170 (30.59%), Postives = 77/170 (45.29%), Query Frame = 0
Query:   21 YAWT-LGGSPPVWGRERYFAVSGRPDEYAALVRQWTSRGYAGERDLFLCRAVLHTLSCNRTDDAVAL--SAAVKEALLQDGGGNAAAVESPLCHFTSFVVELCQARQKAGAPSREMVAAFLKLQEVYDRSINRDPHLDEMLSRIGHVQFNIEPPKAEGLMGMIGQLMGGM 187
            Y W  LG     W    Y       + +AA +    + G A E DLF+ RA L  L+      A     S  V    +    G     E+PL HFT+F+++  +A       SRE+      L+E Y  ++ RDP L+ +++R+  V   IEPP   G+  +IG LM G+
Sbjct:  162 YIWKCLGWQGFGWATTHYIRGDSM-ESFAAALISCMAEGRADEEDLFISRACLQILAVATPGRAAEQLESCEVLLGAISVFRGGLPLPETPLMHFTTFLLKALKAN------SRELEQM---LREKYAPALERDPMLETLIARVEQVYLGIEPPSRGGMGELIGDLMRGL 321          
BLAST of mRNA_H-paniculata_contig2342.6325.1 vs. uniprot
Match: W7TJR8_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJR8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.950e-8
Identity = 46/145 (31.72%), Postives = 63/145 (43.45%), Query Frame = 0
Query:   47 YAALVRQWTSRGYAGERDLFLCRAVLHTL--SCNRTDDAVALSAAVKEALLQDGGGNAAAVESPLCHFTSFVVELCQARQKAGAPSREMVA-----AFLKLQEVYDRSINRDPHLDEMLSRIGHVQFNIEP---PKAEGLMGMIG 181
            Y  ++  W++ GYAGE+DLFL RAVLH L  S      A+  + A+  A             SPL H+   VV L  AR                  F  L   Y  ++ RDP L++++ RIG   F + P   P    L  M+G
Sbjct:  242 YVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAXXXXXXXXXXXXXXXEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG 386          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2342.6325.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G636_ECTSI7.620e-5359.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2ANH1_9STRA7.630e-1032.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A061S2K2_9CHLO1.330e-830.59Golgi to er traffic protein 4 n=1 Tax=Tetraselmis ... [more]
W7TJR8_9STRA3.950e-831.72Uncharacterized protein (Fragment) n=2 Tax=Monodop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 18..185
e-value: 5.7E-22
score: 80.4
IPR007317Golgi to ER traffic protein 4PFAMPF04190DUF410coord: 35..184
e-value: 8.9E-28
score: 97.8
IPR007317Golgi to ER traffic protein 4PANTHERPTHR12875UNCHARACTERIZEDcoord: 36..187
NoneNo IPR availablePANTHERPTHR12875:SF0GOLGI TO ER TRAFFIC PROTEIN 4 HOMOLOGcoord: 36..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2342contigH-paniculata_contig2342:9790..13820 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2342.6325.1mRNA_H-paniculata_contig2342.6325.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2342 9186..15386 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2342.6325.1 ID=prot_H-paniculata_contig2342.6325.1|Name=mRNA_H-paniculata_contig2342.6325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MGTTGARESLRQHWNHSCLGYAWTLGGSPPVWGRERYFAVSGRPDEYAAL
VRQWTSRGYAGERDLFLCRAVLHTLSCNRTDDAVALSAAVKEALLQDGGG
NAAAVESPLCHFTSFVVELCQARQKAGAPSREMVAAFLKLQEVYDRSINR
DPHLDEMLSRIGHVQFNIEPPKAEGLMGMIGQLMGGM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR007317GET4