mRNA_H-paniculata_contig2342.6325.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2342.6325.1
Unique NamemRNA_H-paniculata_contig2342.6325.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2342.6325.1 vs. uniprot
Match: D7G636_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G636_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 7.500e-47
Identity = 95/161 (59.01%), Postives = 116/161 (72.05%), Query Frame = 1
Query: 1672 RYFAVSGRPDEYAALVRQWTSRGYAGERDLFLCRAVLHTLSCNRTDDA-VALSAAVKEALLQDGG---------GNAAAVESPLCHFTSFVVELCQARQKAGAPSREMVAAFLKLQEVYDRSINRDPHLDEMLSRIGHVQFNIEPPKAEGLMGMIGQLMGG 2124
            RYFAVSG P EY+ALV+QW ++GY GE DLF+CRAVLHTLS +RT+DA V L A     L +D           G  A +ESPL HFT FVVELCQ +  AG+PS+EM AAF KL+EVY  S+ RD +LD++L+RIG V F I+PP+  GLMGM+GQLMGG
Sbjct:  150 RYFAVSGCPTEYSALVKQWAAKGYPGETDLFICRAVLHTLSYDRTEDAGVLLDACASWVLGEDAASSPGSEASSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVNLDDLLNRIGDVHFGIKPPQPGGLMGMLGQLMGG 310          
BLAST of mRNA_H-paniculata_contig2342.6325.1 vs. uniprot
Match: A0A7S2ANH1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ANH1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.360e-8
Identity = 45/140 (32.14%), Postives = 75/140 (53.57%), Query Frame = 1
Query: 1672 RYFAVSGRPDEYAALVRQWTSRGYAGERDLFLCRAVLHTLSCNRTDDAVALSAAVKEALLQDGGGNAAAVESPLCHFTSFVVELCQARQKAGAPSREM-VAAFLKLQEVYDRSIN-RDPHLDEMLSRIGHVQFNIEPPKA 2085
            ++FA++  P EYAA ++ W ++G+A E+DLF  RAVLH L+    +   A +A + +AL        A   +P+ +  S ++EL     K     RE    +F  L+E+Y   +  RD     +  R+G VQF+ +PP++
Sbjct:  127 KHFALANIPQEYAASLKVWATKGFASEKDLFFARAVLHMLTIPGKE---AQAAQLYQAL-------GAPSMTPVDNIVSMLLELLDMTTKGHRVGREGGKQSFAVLREMYGPILRLRDHRTLSLFDRVGQVQFHWDPPRS 256          
BLAST of mRNA_H-paniculata_contig2342.6325.1 vs. uniprot
Match: W7TJR8_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJR8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.970e-6
Identity = 46/145 (31.72%), Postives = 63/145 (43.45%), Query Frame = 1
Query: 1705 YAALVRQWTSRGYAGERDLFLCRAVLHTL--SCNRTDDAVALSAAVKEALLQDGGGNAAAVESPLCHFTSFVVELCQARQKAGAPSREMVA-----AFLKLQEVYDRSINRDPHLDEMLSRIGHVQFNIEP---PKAEGLMGMIG 2109
            Y  ++  W++ GYAGE+DLFL RAVLH L  S      A+  + A+  A             SPL H+   VV L  AR                  F  L   Y  ++ RDP L++++ RIG   F + P   P    L  M+G
Sbjct:  242 YVQVLEAWSAEGYAGEKDLFLARAVLHGLGTSSYAVLGALPFARALMTAAQASSAFAPCLETSPLLHYVGLVVALLGARAXXXXXXXXXXXXXXXEVFQLLSSRYQPALRRDPALEKLVGRIGEGGFGLSPASNPMQAFLSSMLG 386          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2342.6325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G636_ECTSI7.500e-4759.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2ANH1_9STRA3.360e-832.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TJR8_9STRA1.970e-631.72Uncharacterized protein (Fragment) n=2 Tax=Monodop... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2342contigH-paniculata_contig2342:9186..15386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue6.6e-43
Seed eggNOG ortholog2880.D7G636
Preferred nameGET4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006508,GO:0006605,GO:0006612,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0015031,GO:0015833,GO:0016043,GO:0019538,GO:0030163,GO:0031647,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034976,GO:0036503,GO:0036506,GO:0042221,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045048,GO:0045184,GO:0045185,GO:0046907,GO:0050896,GO:0051087,GO:0051179,GO:0051205,GO:0051220,GO:0051234,GO:0051235,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071816,GO:0071818,GO:0071840,GO:0072379,GO:0072380,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1904378
EggNOG free text desc.protein insertion into ER membrane
EggNOG OGsKOG3024@1,KOG3024@2759
Ec32 ortholog descriptionUncharacterised protein family UPF0363
Ec32 orthologEc-11_004990.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2734
Cds size564
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.9510057-UTR-H-paniculata_contig2342:9185..97891622929664.9510057-UTR-H-paniculata_contig2342:9185..9789Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2342 9186..9789 -
1691480957.66633-UTR-H-paniculata_contig2342:9185..97891691480957.66633-UTR-H-paniculata_contig2342:9185..9789Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2342 9186..9789 -
1622929665.0502949-UTR-H-paniculata_contig2342:13820..153861622929665.0502949-UTR-H-paniculata_contig2342:13820..15386Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2342 13821..15386 -
1691480957.724728-UTR-H-paniculata_contig2342:13820..153861691480957.724728-UTR-H-paniculata_contig2342:13820..15386Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2342 13821..15386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.9694378-CDS-H-paniculata_contig2342:9789..98851622929664.9694378-CDS-H-paniculata_contig2342:9789..9885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2342 9790..9885 -
1691480957.6760426-CDS-H-paniculata_contig2342:9789..98851691480957.6760426-CDS-H-paniculata_contig2342:9789..9885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2342 9790..9885 -
1622929664.9838839-CDS-H-paniculata_contig2342:10132..102591622929664.9838839-CDS-H-paniculata_contig2342:10132..10259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2342 10133..10259 -
1691480957.6835926-CDS-H-paniculata_contig2342:10132..102591691480957.6835926-CDS-H-paniculata_contig2342:10132..10259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2342 10133..10259 -
1622929665.0026443-CDS-H-paniculata_contig2342:12289..123941622929665.0026443-CDS-H-paniculata_contig2342:12289..12394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2342 12290..12394 -
1691480957.6908698-CDS-H-paniculata_contig2342:12289..123941691480957.6908698-CDS-H-paniculata_contig2342:12289..12394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2342 12290..12394 -
1622929665.0231311-CDS-H-paniculata_contig2342:13278..134071622929665.0231311-CDS-H-paniculata_contig2342:13278..13407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2342 13279..13407 -
1691480957.7009106-CDS-H-paniculata_contig2342:13278..134071691480957.7009106-CDS-H-paniculata_contig2342:13278..13407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2342 13279..13407 -
1622929665.0381796-CDS-H-paniculata_contig2342:13713..138201622929665.0381796-CDS-H-paniculata_contig2342:13713..13820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2342 13714..13820 -
1691480957.7120345-CDS-H-paniculata_contig2342:13713..138201691480957.7120345-CDS-H-paniculata_contig2342:13713..13820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2342 13714..13820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2342.6325.1prot_H-paniculata_contig2342.6325.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2342 9790..13820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2342.6325.1

>prot_H-paniculata_contig2342.6325.1 ID=prot_H-paniculata_contig2342.6325.1|Name=mRNA_H-paniculata_contig2342.6325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MGTTGARESLRQHWNHSCLGYAWTLGGSPPVWGRERYFAVSGRPDEYAAL
VRQWTSRGYAGERDLFLCRAVLHTLSCNRTDDAVALSAAVKEALLQDGGG
NAAAVESPLCHFTSFVVELCQARQKAGAPSREMVAAFLKLQEVYDRSINR
DPHLDEMLSRIGHVQFNIEPPKAEGLMGMIGQLMGGM*
back to top

mRNA from alignment at H-paniculata_contig2342:9186..15386-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2342.6325.1 ID=mRNA_H-paniculata_contig2342.6325.1|Name=mRNA_H-paniculata_contig2342.6325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6201bp|location=Sequence derived from alignment at H-paniculata_contig2342:9186..15386- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATATGTTATAGCAGGAGTGGACTACATTTGCAGAGGGGTGCCAGCGTTG GGGCATTGCACGTGCGTGAGGATTTACCGGATCATGAAGATGCTAAATGA CCACGCGCGAGTGCAGTCGGTAGCCGTGTCTGTCCCTAACTAGCCTGTGT AGAAAATTCTAGGGTTAGCGCAGTCGATAAGTTCGAAGCGGGGTTTGAGG AAATATTCTCCCTCAGAATCATGTCATGGTAACATCAACTGAGGACTGAG AGGAGATATTGTTTGTTGTCGGTGTTCGCTACGGACCATCGCGAGTCTAA AAAAATCTCGGTATAAAACTGCACTTGTCATCCCATGCCGTTTCCCATTA CAGTGGAGACCAGTAGTCTTTGTGTAGTGGGAAACAGAACGCGTGATGTG TTTAGTGTATCCTTTTCGCTTTTTTGTAGTCTGTGACCACCTGTCATGAT CGGGCATAAACACCGTCTAGATACCTCGCCTGCTCGTCAATGTGGCTGGG TATTGCTCTGACTGATCCTATGCACGAACTCTTCCTTGATGCCTTTTTTC GCTTATTCAACCCTTCGTCTTTTCGAAACGTTTGCGGTAGCTAGTTGGAT TATAGCCACCGCGTCTTAACACACTGGTCACGGCGTGATTGTCCAGCATC TCCATGACTTGGGTCAATCCTTGTGTGTGTGCCCTGCCTCTGCTGGCCAG CTAAACCCGTAGTAAACAACGCCCGGGATTCTGAACGCCAACGCTCTCTA CCATCGTCAAGCACAAGACACTCTCGTCCCACTCAATTTCCCCTCCGTAA AAGTAGTTGACTACTCCCGCCAGTATATATATTGGATGATGACGTTTTCA GAGAAGGATTGCCGAGTTATTTCAAGAGGTTATGATGGGACTCCTCAAAC TACGGTCCGAGTTACTTGTACCTGTTGGGAGGGACGTGGAGTGCGCACGA GGTGACTAGATATCCTGGAGGAGGCAAGGGATTGATCCGATTTTCGGTGG TCGTGGGGGATAGTGGGACTACCGCTGCACAGGGTTTATTGAGGCCTTGG AAATGAGCTGTTGAACTCGTTCATACTGTTCATGTGGTTTTGTCTCGCGC TTGCTCCGCGATTAACATTGCGAGATTTTTCCGGCGGCTCGTTCCATGAC TGCCGCTCGTCATGGTTGCAGTTGCGGTTACTGTGACGGCGTTTTTTTTT ATCGGTCTTGGCTGCTGTCGCGGTCGTCCTTGTCGTGCTCACCGCCACGG CAGTGTCGGCGACGGTTTGTCATCGTCATATGTGTGAGTATACTTGTCAT GCCGGTTCTTAGTGGGCTCGGCCAGTGTTGTGTCCCCAATGTGTTGGTCA GCATTGCGTCGTTGCGGTATTTGTTCTCGTTACGGTTGGGGTAGTGGCTA TGATCGTAGCTGTGGTTGCCCATTTACAAAAGGTAATTGAAATGGGGACC GAACGGCGGACACGTGTGCGAGAGGGAGAAAGAAAGAGAGACAGGGGGAA CAAACGGGAGACATCGGAGCGGGTGAGAACAGCGCGAGGACGTGTGTAAA GTAGCCGCCGAGAGAGATGGGAACGACTGGGGCACGGGAGAGTCTACGTC AGCATTGGAACCACAGTTGTCTTGGTTACGCATGGACGCTTGGGGGGTCG CCACCAGTGTGGGGTAGGGAAAGGTGGGGTGGAGGATGCGTGAAGTCCTC GGAGGGTGTCGCTAGAGTCATTGGAACGTCCGATAACTCAGATCCGGGTC CTGAAAAGCTTGAAATCCGCCGTGTCCTAAAACGTCATGATTTGCTGAAT AGAAGACCAAGTTGCTATACATCGATATGACAACATATGTGCTGGAGTAT GACAGGATGCGCGTAACACATTTACTGACACATGGTACGTGTATTGATAT GTTGTGTATGTCCCACGGGGTATCTACTATTCAAAGTGCATTTGCGCTGG GTATTTTTTGTCATGTGTTTTTCGTGCAGATATTTTGCTGTGTCAGGCCG GCCAGATGAATACGCGGCGCTGGTCCGACAATGGACTTCAAGAGGTTATG CTGGGGAGAGAGATCTTTTCCTGTGCAGAGCCGTGCTACACACTCTGTCA TGCAACAGGTAATATACGCGAGCGCTTATTGGAGGAGGATGGATGACAGA TGTCGACGAGGTTGAGAGTTTCGCATAACACACAACTAGCTGCTTTTCTC TCTCGCGGTGTACATGCAGTACGCGAGCATCGATTGCTTTAGTATGCATT TATGTATGTATTTATTGATGTAGGTAGGTATGTAGATATTTATGTACCAG GGGTCGGGATCAGGGCGGTGTTCGTACAGCCGCCGATTCGGCGCAGGACA TTCGCGGGGTTTCTCTACCGAATGTACAAATTCACAAGCCTCTTGAAAAA GTTTATCAACGTGGGGGTATATAACATTGGAAGTGGAGGGTTTCCAAGAA GTCCCAGAGGGGCCAGAACTGAGGAAAATCAAGACCAATAGCGTTCTACT CCCTCGAAAAATCCTAGTGAGGATCCTCATGGGGGGCGAGACTCCAGTGG CCCCTGCTGAGAGCTCGGTGCCGCCTCTGGTAGGTTCTGTGCGCCGATTT TGCCCGAGGCTGGTATTCATTCCCCGTCATGGTATTTTTATACTTCGATT TCAAAAACAAGATGCCATTTTTTTAACATATATATTTATCTTCATGTAAT GAATTAAATGTAAGAAACGCCGCAAAGGTTAAACGTCTGGCTCGTGCAGA GTTGCAAGCTAACTTGGTAGTGTCTTTTTCAATCGGTTATTCGGATCTTC CAACACTTGTCGCGTGTTTCACTTGTTGTGGGCTTCGATAGATGTCAGCC GCTATGTGTGTATGTATGTGTGTGTGTGTGATTGGTGGATCGTGAGTACC GCAGATTACGAGAGGAAAAATTGAGTTGAAAAAAGAAATTGGTGAATCAA CCACCGTGCCAAATCTCGCTTGTACTGTACAAACTGACACAGGACGGACG ATGCAGTGGCACTTTCGGCGGCCGTTAAGGAGGCGTTATTGCAGGATGGC GGTGGTAATGCCGCGGCTGTGGAGTCTCCACTTTGCCACTTCACCAGGTA TTAGAAGAATGTATTGCCCACCGTAGTTGTGTCGTGTATGGCGGAATCTC GAGGGGTGAAACGTTCATCACCCTCTGGACAAGAAAATATAATACTTGGA GGGAGCATTTGCGATGAGAAGAACCAAATTATTTGCCTTAAAGTTTCAGC TTTAAGCACGTTTATTTTTCTGTGTGCCCTGGAAGGGCCATCTGTAACAC GACGACTCCGAATAGTGAACAGTGAAACCAATGGACAGGTGGTGATGGAT ATATTATTCTGTATGCCATCCCCGCACATTCTGATACTTGGAGGCGTTTT TTTTTGTGTTTTTTCAATTTTCCTTGCAAATACTTCACCCGCCGGACGAG CACACCAGTGAATTGTTGAGAATCATTTTTTTTTTTTCTTGTATTGTAAG ACGCTCTGTCCGTTGTAACTGAAGTCTAGAATCATTCGTTGGACGAGTGA AGGTGTGAACGCCGATACCGCAAAAAAAGTGTTTGATTTTTGTTAACGCA CGCACACAAGTACGAACGAGGAAACCTCTCCGAAGTCGCGGTCAATACTC GAGCACCAACGATTGAACCTGTTGCGGTTCTTCATTTGCACGTGAATTAC TTGAAAACAGAGCGATTGATCTTGTTCATCCACGCACGAATGAATCCCAA CAAGTCAAGTTCTTTTTAACAAGTGATTTACGAACGAATACTTGATGATA TATCTTTTGCTGGGATTGGAGGAAATAGGAATGTGTAATGACACCAACAC AAACGTTGCTAGAAGGTGATCGACCACGGTGATGAACGGCCCCATGAGTA TAAGTACTCCCTTTGATTGATCAGGAATCGGGGGAGGGGGGGCACGTGCT GGATCCTTCACTTTTCCTTTTGCCAATGGCCCGTGAAAGGTATATCATTT ATACCTTACATTTCCGAAGGTCCGGCGGACGTGTAGGAAATGGTTATTCT TGTTTATTGGTGACCGTTCGTCTAATCCTTCGTACTCGTCCGGCGCATGA AGTACTCAACAACCGTTTGAATGTGTCCGCGGGGTGGAGGTTTAGTAATT TCGATTTCCTTGGAAGTTTTAAGTACGCTACTGCAACACGTGGAATCGCG TGTGTGAGTCATTAGACACGGCCGGTCTGATATGTTCAGATCTGGTTGGT TTTCGAGAGAAATTGAGTTTTCATCCATTTTTTTCCTTTTTAAAAATCAA TTGCGGGTTGCAAATGAAAAGTACAAGAAGGAAATGATTGGTTTCCCACC GATTAAAAGGAATAGCCGAGGCGGAGGTTCTAGTTTTTGGTGATTCTTTA TGTACAGGATATTGGGATCTCGAGCAGCAGATGGGCGTTAACGTGGTGCA CATGAGCCCTATGAAAATAGGGTATCTGTGTGAATACACGTATCTAATAA ATTCGTGAGGCATGTCAATAATGAATGCAATGTCTTTTTTTTTTTTTTTT TGTTATTTTTAGCCCCGGAAGGCTGAGGCAAAAACCTTTACCGATGCTTC CATACTCAGTGTTTACCCAAGCATGAATGCAGTGTCGTGTACTGTTTCAT TGATAACGGTCCTACAGATACTACTTGAAGTTTAACGTGACTCTGGATGG TATTCATGTTTTATTTAGTTGAAATATACAAACTCGAAAATTATGCCACC GAAACGTTGTCCACAAAAATGCACTGGGAAATATATGTCAAGATTGGGTG GTTTTAGGTAAATTCATTCTGGCGAAAATGTTAAATTTTTCGTGAAAGAG AAGGAGATCGGCGAAACACGTGTGAGGTATCATACAGGACAACCTCGTAA AAACAAGTTTTAGATACCTTTTGCCTGAAAATAGTTTTGCCCGTGTTCCC CTTGGGGGGCTGTTGCTTTTGCGGTATCTATCTAGATTTGGTTGATTCAC TAGATTTTTGACGTATGAAGGTCTGATATTTTCACAGTTTTCTTTACTCT TTCAGTAAAACGCGTAGCTATTTTGAAGACACGACTATCATCGCTGCGCT TCTTTTTTTTTTTCCGTGTGGTTGCAGCTTTGTCGTGGAGCTATGTCAAG CGAGGCAAAAGGCGGGAGCCCCTTCGCGTGAGATGGTTGCTGCCTTTCTG AAGCTGCAGGAGGTGTACGACCGTTCGATCAACCGCGACCCTCACTTGGA CGAGGTGAACGATTGGTTTTGGTCTGATGTCAAGTTTAATCTGTTTTTTG TGTGCATCAAACTTTTCGCGGTTGAAGAGTGGGTTTATGGTTGAGAGTCT TCTGTCGAGCAATTCCAAGGGAGTACTGTTTTTTTTTTTTCCCATGTCTC GCGTTTGTTTCGTGTCCCGTGTCTTCCTGTCTGTCTGTCTGTCTGTCTGC CTGCCTGCTCTTTGACCGTATTGAACCTGCGTGGTCTTGTTGTCGTCACA GATGCTGAGCCGAATAGGCCACGTGCAGTTCAACATCGAGCCTCCTAAAG CAGAAGGGCTAATGGGCATGATAGGGCAACTTATGGGCGGCATGTGATGT TTTGCTCGCGGAATCCTCGTGGTGGGGCATACTTGGGACGAAGATAAAAT TCAAACGGGCGCGACCCTACGCTCCGTCAGCTGGGTACACTGTTGGAGTT GCCGGAGTATTGCGAGTACATGCTGTTTCGTTCTGGGATATAGTTGGAGA GAGAATGCCTGCTGTCTTAGGAAAGGCAACACTGTGATTTTACTCTGTCA TTGGTGTGATGGGGATTGGCGTTGGGACGACCGACCCTGGTGGGGGTGTA AGTCGCTGCGTTGCAAAGGAGAAAATGAAAGATACAAAGGTCATGATCCA ATCGAAGGCACTTATTGTTTCTTTTTCTTAGATCATAATTCTGAGATGTT TTTGGGGCCCATGAGGACACAAGAATGGTTCAATTGCAGTAAGCGTCGTG TGTGCAATACATGAATATGTTGTCGAGCTGCCCTTCCACGCAGGCTTTTG GCCGTGCCGAACGATTGATTGATGGTATACCACTAGAGCTGCCAAAACAC CCTGTGTCGTCTTTTTGCAATGGGATTTCCTGCAGCGAAGAGGGCGGGTT TTTACCCGTTTTTCAGCTCGGGCCAAATGTATTCATTATTTATCAACGGA G
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2342:9186..15386-

>mRNA_H-paniculata_contig2342.6325.1 ID=mRNA_H-paniculata_contig2342.6325.1|Name=mRNA_H-paniculata_contig2342.6325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig2342:9186..15386- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAACGACTGGGGCACGGGAGAGTCTACGTCAGCATTGGAACCACAG
TTGTCTTGGTTACGCATGGACGCTTGGGGGGTCGCCACCAGTGTGGGGTA
GGGAAAGATGGGAACGACTGGGGCACGGGAGAGTCTACGTCAGCATTGGA
ACCACAGTTGTCTTGGTTACGCATGGACGCTTGGGGGGTCGCCACCAGTG
TGGGGTAGGGAAAGATATTTTGCTGTGTCAGGCCGGCCAGATGAATACGC
GGCGCTGGTCCGACAATGGACTTCAAGAGGTTATGCTGGGGAGAGAGATC
TTTTCCTGTGCAGAGCCGTGCTACACACTCTGTCATGCAACAGATATTTT
GCTGTGTCAGGCCGGCCAGATGAATACGCGGCGCTGGTCCGACAATGGAC
TTCAAGAGGTTATGCTGGGGAGAGAGATCTTTTCCTGTGCAGAGCCGTGC
TACACACTCTGTCATGCAACAGGACGGACGATGCAGTGGCACTTTCGGCG
GCCGTTAAGGAGGCGTTATTGCAGGATGGCGGTGGTAATGCCGCGGCTGT
GGAGTCTCCACTTTGCCACTTCACCAGGACGGACGATGCAGTGGCACTTT
CGGCGGCCGTTAAGGAGGCGTTATTGCAGGATGGCGGTGGTAATGCCGCG
GCTGTGGAGTCTCCACTTTGCCACTTCACCAGCTTTGTCGTGGAGCTATG
TCAAGCGAGGCAAAAGGCGGGAGCCCCTTCGCGTGAGATGGTTGCTGCCT
TTCTGAAGCTGCAGGAGGTGTACGACCGTTCGATCAACCGCGACCCTCAC
TTGGACGAGCTTTGTCGTGGAGCTATGTCAAGCGAGGCAAAAGGCGGGAG
CCCCTTCGCGTGAGATGGTTGCTGCCTTTCTGAAGCTGCAGGAGGTGTAC
GACCGTTCGATCAACCGCGACCCTCACTTGGACGAGATGCTGAGCCGAAT
AGGCCACGTGCAGTTCAACATCGAGCCTCCTAAAGCAGAAGGGCTAATGG
GCATGATAGGGCAACTTATGGGCGGCATGTGAATGCTGAGCCGAATAGGC
CACGTGCAGTTCAACATCGAGCCTCCTAAAGCAGAAGGGCTAATGGGCAT
GATAGGGCAACTTATGGGCGGCATGTGA
back to top