mRNA_H-paniculata_contig23413.6322.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23413.6322.1
Unique NamemRNA_H-paniculata_contig23413.6322.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23413.6322.1 vs. uniprot
Match: A0A6H5JZH8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 8.960e-31
Identity = 54/101 (53.47%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:    1 MKLFKAAKLFNFTYMEQHLYTSDEIRTLTVFRFVTNEIIHKLVLERGNYRIAAADADAEYDLLAFWRGNRDLLPAWHSMAMDLALIQPSSCFIERVFSILR 303
            MKLFKAAKL +FTYM+ H Y++DEIR+L+VF FV ++++  L+ E+ ++ +AA D D +YD + FW  N+  LP WH + +D+ L+QPSS F+ERVFSILR
Sbjct:  264 MKLFKAAKLTDFTYMKTHKYSNDEIRSLSVFPFVDDDMMDGLLKEKNDFYVAATDTDTDYDNMTFWSDNKKNLPTWHELVLDVVLLQPSSAFMERVFSILR 364
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BLAST of mRNA_H-paniculata_contig23413.6322.1 vs. uniprot
Match: A0A6H5JEX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.120e-28
Identity = 50/101 (49.50%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 MKLFKAAKLFNFTYMEQHLYTSDEIRTLTVFRFVTNEIIHKLVLERGNYRIAAADADAEYDLLAFWRGNRDLLPAWHSMAMDLALIQPSSCFIERVFSILR 303
            +++FKAAKL +FT+M+   Y+ D IRTL V  FV  +++  L+ E+ ++ +AA+D +AEY  +AFW  N+  LP WH++ +D+AL+QPSS F+ERVFSILR
Sbjct:   28 LEVFKAAKLTDFTFMKGRKYSDDTIRTLKVLPFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILR 128
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BLAST of mRNA_H-paniculata_contig23413.6322.1 vs. uniprot
Match: A0A6H5KCX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX4_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 6.650e-27
Identity = 48/100 (48.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 MKLFKAAKLFNFTYMEQHLYTSDEIRTLTVFRFVTNEIIHKLVLERGNYRIAAADADAEYDLLAFWRGNRDLLPAWHSMAMDLALIQPSSCFIERVFSIL 300
            +++FKAAKL +F +M+   Y+ D IR+L V  FV ++++  L+ E+ +Y +AA+D D EY  +AFW+ N   LP WH++ +D+AL+QPSS F+ERVFSIL
Sbjct:   28 LEMFKAAKLTDFVFMKSKKYSDDTIRSLKVLPFVKSKMVKGLLKEKEDYYMAASDTDIEYGHMAFWKDNEKRLPTWHALVLDVALLQPSSAFMERVFSIL 127
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BLAST of mRNA_H-paniculata_contig23413.6322.1 vs. uniprot
Match: A0A6H5JD81_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD81_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.890e-26
Identity = 50/101 (49.50%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 MKLFKAAKLFNFTYMEQHLYTSDEIRTLTVFRFVTNEIIHKLVLERGNYRIAAADADAEYDLLAFWRGNRDLLPAWHSMAMDLALIQPSSCFIERVFSILR 303
            +++FKAAKL +FT+M+   Y+ D IRTL V  FV  +++  L+ E+ ++ +AA+D +AEY  +AFW  N+  LP WH++ +D+AL+QPSS F+ERVFSILR
Sbjct:  556 LEVFKAAKLTDFTFMKGRKYSDDTIRTLKVLPFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILR 656
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BLAST of mRNA_H-paniculata_contig23413.6322.1 vs. uniprot
Match: A0A6H5KTX0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.970e-26
Identity = 50/101 (49.50%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 MKLFKAAKLFNFTYMEQHLYTSDEIRTLTVFRFVTNEIIHKLVLERGNYRIAAADADAEYDLLAFWRGNRDLLPAWHSMAMDLALIQPSSCFIERVFSILR 303
            +++FKAAKL +FT+M+   Y+ D IRTL V  FV  +++  L+ E+ ++ +AA+D +AEY  +AFW  N+  LP WH++ +D+AL+QPSS F+ERVFSILR
Sbjct:  639 LEVFKAAKLTDFTFMKGRKYSDDTIRTLKVLPFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILR 739
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BLAST of mRNA_H-paniculata_contig23413.6322.1 vs. uniprot
Match: A0A6H5K4E0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E0_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.030e-25
Identity = 42/98 (42.86%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:   13 KAAKLFNFTYMEQHLYTSDEIRTLTVFRFVTNEIIHKLVLERGNYRIAAADADAEYDLLAFWRGNRDLLPAWHSMAMDLALIQPSSCFIERVFSILRA 306
            +AA+L +FT+M +H Y+++E+R+L VF F++ E + KL+ E+ +Y +AA   D +YD   FW+ +++ LP W ++ +D+AL+QPSS F+ERVFS + +
Sbjct:    2 EAARLIDFTFMRRHKYSANEVRSLAVFPFISEEQVDKLLTEKDDYYVAARVTDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMERVFSTVHS 99
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BLAST of mRNA_H-paniculata_contig23413.6322.1 vs. uniprot
Match: A0A6H5JCP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP4_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 6.660e-25
Identity = 47/101 (46.53%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 MKLFKAAKLFNFTYMEQHLYTSDEIRTLTVFRFVTNEIIHKLVLERGNYRIAAADADAEYDLLAFWRGNRDLLPAWHSMAMDLALIQPSSCFIERVFSILR 303
            +++FKAAKL ++ +M+   +T D IR+L V  FV ++++  L  E+ NY +AA+D DAEY  + FW  N+  LP WH++ +D+A +QPSS F+ER+FSILR
Sbjct:  246 LEMFKAAKLTDYVFMKGRKFTDDAIRSLKVLPFVKSKMVRGLFKEKENYFMAASDTDAEYGHMGFWNDNKTKLPTWHALMLDVAFLQPSSAFMERLFSILR 346
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BLAST of mRNA_H-paniculata_contig23413.6322.1 vs. uniprot
Match: A0A6H5L6R8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R8_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 9.850e-25
Identity = 44/102 (43.14%), Postives = 75/102 (73.53%), Query Frame = 1 
Query:    1 MKLFKAAKLFNFTYMEQHLYTSDEIRTLTVFRFVTNEIIHKLVLERGNYRIAAADADAEYDLLAFWRGNRDLLPAWHSMAMDLALIQPSSCFIERVFSILRA 306
            +K  +AA+L +FT+M +H Y+++E+R+L VF F++ E + KL+ E+ +Y +AA   D +YD   FW+ +++ LP W ++ +D+AL+QPSS F+ERVFS +R+
Sbjct:  401 LKYMEAARLIDFTFMRRHKYSANEVRSLAVFPFISEEQVDKLLTEKDDYYVAARVTDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMERVFSTVRS 502
[Close]
BLAST of mRNA_H-paniculata_contig23413.6322.1 vs. uniprot
Match: A0A6H5KX52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX52_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.070e-24
Identity = 48/101 (47.52%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 MKLFKAAKLFNFTYMEQHLYTSDEIRTLTVFRFVTNEIIHKLVLERGNYRIAAADADAEYDLLAFWRGNRDLLPAWHSMAMDLALIQPSSCFIERVFSILR 303
            +++FKAAKL +F +M+   Y+ D IR+L V  FV ++++  L+ E+ +Y +AA+D D EY  +AFW  N+  LP WH++ +D+AL+QP S F+ERVFSILR
Sbjct:  531 LEMFKAAKLTDFVFMKSKKYSDDTIRSLKVLPFVKSKMVRGLLKEKEDYYMAASDTDIEYGHMAFWDDNKKRLPTWHALVLDVALLQPCSAFMERVFSILR 631
[Close]
BLAST of mRNA_H-paniculata_contig23413.6322.1 vs. uniprot
Match: A0A6H5JJR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR7_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.530e-24
Identity = 48/101 (47.52%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:    1 MKLFKAAKLFNFTYMEQHLYTSDEIRTLTVFRFVTNEIIHKLVLERGNYRIAAADADAEYDLLAFWRGNRDLLPAWHSMAMDLALIQPSSCFIERVFSILR 303
            +++FKAAKL ++ +M+   +T D IR+L V  FV ++++  L+ E+ +Y +AA+D DAEY  +AFW  N+  LP WH++ +D+AL+ PSS F+ERVFSILR
Sbjct:  755 LEMFKAAKLTDYVFMKGRKFTDDAIRSLKVLPFVKSKMVRGLLKEKEDYCMAASDTDAEYAHMAFWNDNKTKLPTWHALMLDVALLYPSSAFMERVFSILR 855
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23413.6322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JZH8_9PHAE8.960e-3153.47Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEX4_9PHAE2.120e-2849.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCX4_9PHAE6.650e-2748.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD81_9PHAE4.890e-2649.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTX0_9PHAE4.970e-2649.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4E0_9PHAE2.030e-2542.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JCP4_9PHAE6.660e-2546.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R8_9PHAE9.850e-2543.14Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KX52_9PHAE1.070e-2447.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR7_9PHAE1.530e-2447.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23413contigH-paniculata_contig23413:1242..1550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.6352072-CDS-H-paniculata_contig23413:1241..15501622929664.6352072-CDS-H-paniculata_contig23413:1241..1550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23413 1242..1550 +
1691480957.573955-CDS-H-paniculata_contig23413:1241..15501691480957.573955-CDS-H-paniculata_contig23413:1241..1550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23413 1242..1550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23413.6322.1prot_H-paniculata_contig23413.6322.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23413 1242..1550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23413.6322.1

>prot_H-paniculata_contig23413.6322.1 ID=prot_H-paniculata_contig23413.6322.1|Name=mRNA_H-paniculata_contig23413.6322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MKLFKAAKLFNFTYMEQHLYTSDEIRTLTVFRFVTNEIIHKLVLERGNYR
IAAADADAEYDLLAFWRGNRDLLPAWHSMAMDLALIQPSSCFIERVFSIL
RA*
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mRNA from alignment at H-paniculata_contig23413:1242..1550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23413.6322.1 ID=mRNA_H-paniculata_contig23413.6322.1|Name=mRNA_H-paniculata_contig23413.6322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig23413:1242..1550+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACTCTTCAAAGCTGCCAAGCTCTTCAATTTCACGTACATGGAGCA
ACACCTCTATACCAGCGACGAGATCCGCACGTTGACGGTGTTTCGGTTTG
TGACAAACGAAATCATCCACAAGCTGGTGCTAGAGAGGGGTAACTATCGT
ATCGCAGCCGCCGACGCCGATGCCGAATACGACCTATTGGCGTTTTGGAG
GGGTAACAGGGACCTTCTCCCGGCGTGGCACAGCATGGCGATGGACCTGG
CGCTCATCCAGCCGTCGTCTTGCTTCATCGAGCGTGTTTTCTCTATTCTC
CGGGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23413:1242..1550+

>mRNA_H-paniculata_contig23413.6322.1 ID=mRNA_H-paniculata_contig23413.6322.1|Name=mRNA_H-paniculata_contig23413.6322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig23413:1242..1550+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACTCTTCAAAGCTGCCAAGCTCTTCAATTTCACGTACATGGAGCA
ACACCTCTATACCAGCGACGAGATCCGCACGTTGACGGTGTTTCGGTTTG
TGACAAACGAAATCATCCACAAGCTGGTGCTAGAGAGGGGTAACTATCGT
ATCGCAGCCGCCGACGCCGATGCCGAATACGACCTATTGGCGTTTTGGAG
GGGTAACAGGGACCTTCTCCCGGCGTGGCACAGCATGGCGATGGACCTGG
CGCTCATCCAGCCGTCGTCTTGCTTCATCGAGCGTGTTTTCTCTATTCTC
CGGGCGTGAATGAAACTCTTCAAAGCTGCCAAGCTCTTCAATTTCACGTA
CATGGAGCAACACCTCTATACCAGCGACGAGATCCGCACGTTGACGGTGT
TTCGGTTTGTGACAAACGAAATCATCCACAAGCTGGTGCTAGAGAGGGGT
AACTATCGTATCGCAGCCGCCGACGCCGATGCCGAATACGACCTATTGGC
GTTTTGGAGGGGTAACAGGGACCTTCTCCCGGCGTGGCACAGCATGGCGA
TGGACCTGGCGCTCATCCAGCCGTCGTCTTGCTTCATCGAGCGTGTTTTC
TCTATTCTCCGGGCGTGA
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