mRNA_H-paniculata_contig234.6314.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig234.6314.1
Unique NamemRNA_H-paniculata_contig234.6314.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig234.6314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig234contigH-paniculata_contig234:7807..10418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size296
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.42761-CDS-H-paniculata_contig234:7806..80541622929663.42761-CDS-H-paniculata_contig234:7806..8054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig234 7807..8054 +
1691480957.0003502-CDS-H-paniculata_contig234:7806..80541691480957.0003502-CDS-H-paniculata_contig234:7806..8054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig234 7807..8054 +
1622929663.4410644-CDS-H-paniculata_contig234:10372..104181622929663.4410644-CDS-H-paniculata_contig234:10372..10418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig234 10373..10418 +
1691480957.008295-CDS-H-paniculata_contig234:10372..104181691480957.008295-CDS-H-paniculata_contig234:10372..10418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig234 10373..10418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig234.6314.1prot_H-paniculata_contig234.6314.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig234 7807..10418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig234.6314.1

>prot_H-paniculata_contig234.6314.1 ID=prot_H-paniculata_contig234.6314.1|Name=mRNA_H-paniculata_contig234.6314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MRWDSTNHNNSPPVAEALSAACLWFQECALRRLQYIIIMVDPESMGSADA
LISRLQAISAGGWANIQAPVREAFEAAGTTASRLATELAASRDAVKRL
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mRNA from alignment at H-paniculata_contig234:7807..10418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig234.6314.1 ID=mRNA_H-paniculata_contig234.6314.1|Name=mRNA_H-paniculata_contig234.6314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2612bp|location=Sequence derived from alignment at H-paniculata_contig234:7807..10418+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTGGGATTCAACCAACCACAACAACTCTCCGCCAGTCGCAGAAGC
ACTCTCTGCCGCATGCCTTTGGTTTCAGGAATGCGCACTGCGTAGGCTGC
AATACATCATAATCATGGTAGATCCAGAGAGTATGGGCTCCGCTGATGCT
CTTATTTCGCGATTGCAGGCTATATCTGCTGGCGGATGGGCTAATATCCA
GGCTCCCGTGAGGGAAGCTTTCGAAGCAGCAGGCACTACAGCTAGTAGGT
GAATGTGTAGATGTGACAGCATCAAAGCATCCCCACATGTACTTTATATA
TTCTCTGAACTGTTACATCAATCAACATCCAGGTTCTATCGAGGGAAATT
TTCCACAGTGCAGCCACCAAAGCTAGCCGTCTTTTAAGTAGGTAAAACAG
CTGGGGTCTTACAACAGCATCGCATCGCCCGCACGTTTTGATACTGTACT
TATGAAATCTCGATTATTGAATTTTGAATTTTGTTTCAAGTCTACAGTGT
ATGGTTGAGCTCATGTGAACATTGCGGAGGAGGGAGTCACCTCGTCAACT
GTACGTTGTCCCACAACGTGGCCGCAGAATTATTCCTGCCGCCGTTAGTA
CCATACTTCTAGTGCATTATATGTGCGCATGACCCTGGGTGGAATGACAC
AAAGACACCTTTGAGCGACCAGCGGTGCTGTCTGGACTGTTATTTCGGAT
GACATCACGAATAATATAAACCCTTACAGCGCCATTCCCGCAGGATCCCC
ATGATAAGAAAAGAAACGGCTACCGACAAGAACGTAAAAACCCACTCTGA
AACGGCAGAAAGGGGTACAGCGGCCTGCGCACACGGAGGGGGGCTAGCGA
CCGAGTGTGTGGTCGTTGTCTCCCCCAAACCTGATCACGTCACGCCAACA
GTACCCCCTTTTTGGCCATGAGGGCGCTTTGGTCATCGACCACGCATGTT
TTTTACGGTGTACAATGTCAACTGTATACTGCAGACCGTACAGCCAGCAC
AACTGTGTAGTATTAGTACACTTTAAAGACAATGTACTGCGGCAGAGTAG
TCACAGGTAGCACGACTCAAAGTACTAGCCAGTGCAGCGCAATCTGTTGT
TGTTATATGAAGGCAGCAACACGGGAAGGTAGCTATAATAGAGTGGAAGT
GGAGTGGAGAGCGAGGCGTCGTTAGGAGCTTAATGAGGCTAGAACGTTTC
GTCGTTGGTAAGAGGAGGAGCCTGAGTGTGTGATTGATTTTGTGAGCAGT
GTCATGTTCAGAACAGGTTTTTGCAGATGGTATCTTGACAGGCGTCACCG
ACTATGGACCCAGGGCAAGTGATCCGGATTATTAGTAGGTTCAGTTGGTT
GGATTTTTGCTACGGCTAGACGTTCAAACGAGGGCTGGGAGTGGCTGTTG
ACGCAGTGGTTCCCGGACAAAACAGGATACAAAAGTGAACAAAAAGGGGT
CTCCGCTACAAGATATGGTCATGCCAACTGCTAAGGACTCGGTGAGCATG
GCAGCAGGACCGTTTGTTTCGAATCCAATATTGCACGTGATTGTTGAAAG
GCCCTCGTCTGCGTTGTTGAGAGTATAAGCCATGGACCAAATAGGGGATT
TCCCAATCAGAGTAGAGGCGATTAGGTACATCTCCCTAAACCGTTGACAA
AAAGGAGTATGTTGCCAACCCAAAGTAGAAGGTCACTCTTTTACAATCAC
TAGTTCCTGCGTTGCTGATGCTTTTTCGATGGAAGAATGGTTGGTGAAGC
ACCTCAAGGGTTGCGCATATCGAGTAGAGCAAAAACGAGGGCTCAAAAGC
TTGCACGATTCATTCGCCAGCCTCTTTCCGCGCGCGCAGGCTGCTGTACC
CCTTTCTGCCGTTTTAGGATGTGTATACCCATTTCTATTCAACTCCCCCA
AAATGTATACACTCGGAAGAATATTTTGGGGCAGAAAAGACAACATTTTC
ATGCATATACTGGTAAACGAAGCCCCGCTGCCAGGTGCATATACCATACT
GTACGCTCTGCCGTTGGAGGACGAACAATTCATTTTCTGTATGTGAATAT
ATGATACAGACGACAGCCAGCAGGAGTTTACTAACCTCAACCATAATCTA
ATACGGTATCGTATGCTGCCTACTGTAGAGCAAGATATAGACATGGCCCC
GCGTCGCGCATCCCATAATGCAGAAGCACCATCTGCCATGCCTGGTTCAG
CACAGCAGCCCATGTCAAAATTGGATGTTGCAGCCACCTCTCATTGCTTA
ATACAAGACACTGAAGCAAATGAAAAAAACATTTACCCCCTCCCGGGGGG
GTTTGGGGATCCTGCGTTACAGTCTACTGGTTATTTTCCATTTTTGTCCA
GCAAGTGCAGACCAATGAAACCCTCTTCCCCCGCTCCCCATTTCTATGCT
AACCCCTCACCCCAAAACACTGGACTGTGAGTTGATTTTGTTCGGATTAC
AGCGGTGGTATTGAAAGGACTAACCGCTGTCACCGTACGTCCAGTATCTT
GAGTATCTCCGGTTGACCGTGGCCAATCCCCTCGTCCGTCGTACGACAAC
TGACCGGTGCAAGTAGGCTCGCAACTGAACTGGCAGCCTCGCGGGATGCA
GTGAAAAGGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig234:7807..10418+

>mRNA_H-paniculata_contig234.6314.1 ID=mRNA_H-paniculata_contig234.6314.1|Name=mRNA_H-paniculata_contig234.6314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig234:7807..10418+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTGGGATTCAACCAACCACAACAACTCTCCGCCAGTCGCAGAAGC
ACTCTCTGCCGCATGCCTTTGGTTTCAGGAATGCGCACTGCGTAGGCTGC
AATACATCATAATCATGGTAGATCCAGAGAGTATGGGCTCCGCTGATGCT
CTTATTTCGCGATTGCAGGCTATATCTGCTGGCGGATGGGCTAATATCCA
GGCTCCCGTGAGGGAAGCTTTCGAAGCAGCAGGCACTACAGCTAGTAGAT
GCGGTGGGATTCAACCAACCACAACAACTCTCCGCCAGTCGCAGAAGCAC
TCTCTGCCGCATGCCTTTGGTTTCAGGAATGCGCACTGCGTAGGCTGCAA
TACATCATAATCATGGTAGATCCAGAGAGTATGGGCTCCGCTGATGCTCT
TATTTCGCGATTGCAGGCTATATCTGCTGGCGGATGGGCTAATATCCAGG
CTCCCGTGAGGGAAGCTTTCGAAGCAGCAGGCACTACAGCTAGTAGGCTC
GCAACTGAACTGGCAGCCTCGCGGGATGCAGTGAAAAGGCTGGCTCGCAA
CTGAACTGGCAGCCTCGCGGGATGCAGTGAAAAGGCTG
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