mRNA_H-paniculata_contig23396.6312.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23396.6312.1
Unique NamemRNA_H-paniculata_contig23396.6312.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23396.6312.1 vs. uniprot
Match: A0A6H5KTH4_9PHAE (HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTH4_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.320e-41
Identity = 79/104 (75.96%), Postives = 93/104 (89.42%), Query Frame = 1
Query:    1 QASSMAEISKKMKGS-KLRNFPQG-RLVDQVVLVGGATRMP--SKLVAGITGVTPKRTVNPDQAVALGAAAFAGILEGEVEGQEVLTAWQASVYRMMAMSGLMQ 300
            Q SSMAE++++M GS KLR FPQG R+VD+VVLVGGATRMP   +LV GITGV PKRTV+PD+AVALGAAAFAGILEGEVEGQEV+T+WQASVYRMMA +G+M+
Sbjct:  208 QVSSMAEVARRMDGSAKLRRFPQGGRMVDKVVLVGGATRMPCVQRLVGGITGVKPKRTVDPDRAVALGAAAFAGILEGEVEGQEVMTSWQASVYRMMARNGMME 311          
BLAST of mRNA_H-paniculata_contig23396.6312.1 vs. uniprot
Match: D7G3X0_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X0_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 2.230e-37
Identity = 77/101 (76.24%), Postives = 90/101 (89.11%), Query Frame = 1
Query:   10 SMAEISKKMKGS-KLRNFPQG-RLVDQVVLVGGATRMP--SKLVAGITGVTPKRTVNPDQAVALGAAAFAGILEGEVEGQEVLTAWQASVYRMMAMSGLMQ 300
            SMAE+++ M GS KLR FPQG R+VD+VVLVGGATRMP   +LV GITGV PKRTV+PD+AVALGAAAFAGILEGEVEGQEV+T+WQASVYRMMA +G+M+
Sbjct:  619 SMAEVARSMDGSAKLRRFPQGGRMVDKVVLVGGATRMPCVQRLVGGITGVKPKRTVDPDRAVALGAAAFAGILEGEVEGQEVMTSWQASVYRMMARNGMME 719          
BLAST of mRNA_H-paniculata_contig23396.6312.1 vs. uniprot
Match: A0A835Z756_9STRA (Hsp70 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z756_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.710e-23
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:    1 QASSMAEISKKMK-GSKLRNFPQGRLVDQVVLVGGATRM--PSKLVAGITGVTPKRTVNPDQAVALGAAAFAGILEGEVEGQEVLTAWQASVYRMMAMSG 291
            QA +   + + M  G+KL  FPQGR +DQVVLVGG TRM    +LV  +TGV    TVNPD+AVALGAA +AGI++ EV+G EV+TAWQA + R MA +G
Sbjct:  384 QADAFGRLQRTMTTGNKLHVFPQGRPLDQVVLVGGGTRMLCVQQLVQAVTGVKVAMTVNPDEAVALGAAVYAGIMDNEVQGIEVMTAWQARILREMARTG 483          
BLAST of mRNA_H-paniculata_contig23396.6312.1 vs. uniprot
Match: A0A7S0STT4_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STT4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.960e-22
Identity = 43/91 (47.25%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   13 MAEISKKMKGSKLRNFPQGRLVDQVVLVGGATRMPS--KLVAGITGVTPKRTVNPDQAVALGAAAFAGILEGEVEGQEVLTAWQASVYRMM 279
            +  + ++ + S L  FP G+ +D+V+L+GG+TR+P+  +LV  +TG+ PK TVNPD+AV+LGAA  AGIL+GE+   +V++AWQA++YR +
Sbjct:   37 LKRLQRETRLSSLSLFPSGQTLDEVILIGGSTRIPAIKRLVKVMTGIDPKMTVNPDEAVSLGAAVLAGILDGEITDMQVMSAWQAAMYRTL 127          
BLAST of mRNA_H-paniculata_contig23396.6312.1 vs. uniprot
Match: A0A4D9CZP8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZP8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.370e-21
Identity = 47/86 (54.65%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   22 ISKKMKGSKLRNFPQGRLVDQVVLVGGATRMPS--KLVAGITGVTPKRTVNPDQAVALGAAAFAGILEGEVEGQEVLTAWQASVYR 273
            + K+  G K+R FPQGR + +VV+VGGATRMPS  +LVA +TG+TP+ TV+PD+AVALGA   AG+L+G +E  ++LT  QA++ R
Sbjct:  852 VRKRNPGLKIREFPQGRSIQEVVMVGGATRMPSIRRLVAAVTGITPRTTVDPDEAVALGAGIHAGVLDGIIEDMDMLTPMQAAIAR 937          
BLAST of mRNA_H-paniculata_contig23396.6312.1 vs. uniprot
Match: A0A7S1DWZ4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DWZ4_HEMAN)

HSP 1 Score: 87.8 bits (216), Expect = 7.480e-20
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = 1
Query:   13 MAEISKKMKG-SKLRNFPQGRLVDQVVLVGGATRMPS--KLVAGITGVTPKRTVNPDQAVALGAAAFAGILEGEVEGQEVLTAWQASVYRMMAMSGL 294
            M ++ K++K   KLR FP G  + +VV VGGATRMP+  K V GITGV P++T++P+ AVALGAA  AG+++G+++G EVL+  QA++ R  A   L
Sbjct:   28 MHKVQKQVKHLGKLREFPPGASLTEVVFVGGATRMPAVVKTVRGITGVEPRKTIDPEAAVALGAAVQAGVMDGDIQGLEVLSPLQAALLRGFARKRL 124          
BLAST of mRNA_H-paniculata_contig23396.6312.1 vs. uniprot
Match: A0A7S2W2M1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2M1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.970e-19
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1
Query:   28 KKMKGS-KLRNFPQGRLVDQVVLVGGATRMP--SKLVAGITGVTPKRTVNPDQAVALGAAAFAGILEGEVEGQEVLTAWQASVYRMMAM 285
            K+ KG+ KLR FP GR + +VVLVGGATRMP   +LV  + G+ P+RTV+PD AVALGAA  AGI++GEVEG EV + +QA+  R +A+
Sbjct:  230 KRGKGAVKLRQFPTGRALSEVVLVGGATRMPVVQQLVRILFGIEPRRTVDPDLAVALGAAIQAGIMDGEVEGLEVFSPFQAAFLRYLAI 318          
BLAST of mRNA_H-paniculata_contig23396.6312.1 vs. uniprot
Match: L1J612_GUITC (Hsp70, chloroplastic n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J612_GUITC)

HSP 1 Score: 85.9 bits (211), Expect = 1.960e-17
Identity = 43/96 (44.79%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 QASSMAEISKKMKGSKLRNFPQGRLVDQVVLVGGATRMPS--KLVAGITGVTPKRTVNPDQAVALGAAAFAGILEGEVEGQEVLTAWQASVYRMMA 282
            Q + + ++ K++ G +LR FP GR + +V+LVGG T+MPS   L+  +TG+T K+T++PD+AV+LGAA  AG+++G ++G EVL+  QA++ R  A
Sbjct:  437 QKAEVQKVQKRVGGIRLRKFPAGRRLSEVILVGGGTKMPSVTNLIRTMTGLTAKKTIDPDEAVSLGAAIQAGMMDGLIQGFEVLSPLQAALLRGFA 532          
BLAST of mRNA_H-paniculata_contig23396.6312.1 vs. uniprot
Match: A0A7S3P0Y7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P0Y7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.560e-16
Identity = 45/84 (53.57%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   40 GSKLRNFPQGRLVDQVVLVGGATRMPS--KLVAGITGVTPKRTVNPDQAVALGAAAFAGILEGEVEGQ-EVLTAWQASVYRMMA 282
            G K+++   GR + +VVLVGGATRMP+  +L+  +TGVTP++TVNPD+AVALG AA  GIL+G V+G  ++L+  QA++ R MA
Sbjct:   75 GVKVQDGITGRPISRVVLVGGATRMPAVGRLIGALTGVTPQKTVNPDEAVALGCAANVGILDG-VDGMGKILSPMQAAILRAMA 157          
BLAST of mRNA_H-paniculata_contig23396.6312.1 vs. uniprot
Match: A0A7S2PXA7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PXA7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.770e-16
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    1 QASSMAEISKKMKGSKLRNFPQGRLVDQVVLVGGATRMP--SKLVAGITGVTPKRTVNPDQAVALGAAAFAGILEGEVEGQEVLTAWQASVYRMMA 282
            QA S+ E +K     K++    GR++ ++VLVGGATRMP   KL+  + G TP+RTVNPD+AVALG A  AGIL+GE +GQ VL+   A+V R +A
Sbjct:  579 QALSLTEGTK-----KVQEGIHGRVLSRIVLVGGATRMPVIGKLLEAVVGQTPQRTVNPDEAVALGCAVQAGILDGEDQGQTVLSPMAAAVMRALA 669          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23396.6312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTH4_9PHAE4.320e-4175.96HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7G3X0_ECTSI2.230e-3776.24Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
A0A835Z756_9STRA5.710e-2356.00Hsp70 protein-domain-containing protein n=1 Tax=Tr... [more]
A0A7S0STT4_9STRA2.960e-2247.25Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A4D9CZP8_9STRA3.370e-2154.65Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1DWZ4_HEMAN7.480e-2049.48Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2W2M1_9STRA2.970e-1957.30Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
L1J612_GUITC1.960e-1744.79Hsp70, chloroplastic n=2 Tax=Guillardia theta TaxI... [more]
A0A7S3P0Y7_9STRA1.560e-1653.57Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2PXA7_9STRA1.770e-1651.04Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23396contigH-paniculata_contig23396:431..2047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue8.7e-15
Seed eggNOG ortholog55529.EKX43525
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0443@1,KOG0102@2759
Ec32 ortholog descriptionHeat shock protein 70
Ec32 orthologEc-15_003770.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Exons3
Model size303
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23396.6312.1prot_H-paniculata_contig23396.6312.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23396 443..2047 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.22701-UTR-H-paniculata_contig23396:430..4421622929663.22701-UTR-H-paniculata_contig23396:430..442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23396 431..442 +
1691480956.9411163-UTR-H-paniculata_contig23396:430..4421691480956.9411163-UTR-H-paniculata_contig23396:430..442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23396 431..442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.2438493-CDS-H-paniculata_contig23396:442..5501622929663.2438493-CDS-H-paniculata_contig23396:442..550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23396 443..550 +
1691480956.9509618-CDS-H-paniculata_contig23396:442..5501691480956.9509618-CDS-H-paniculata_contig23396:442..550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23396 443..550 +
1622929663.259073-CDS-H-paniculata_contig23396:1154..12591622929663.259073-CDS-H-paniculata_contig23396:1154..1259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23396 1155..1259 +
1691480956.958495-CDS-H-paniculata_contig23396:1154..12591691480956.958495-CDS-H-paniculata_contig23396:1154..1259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23396 1155..1259 +
1622929663.2735956-CDS-H-paniculata_contig23396:1969..20471622929663.2735956-CDS-H-paniculata_contig23396:1969..2047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23396 1970..2047 +
1691480956.9659412-CDS-H-paniculata_contig23396:1969..20471691480956.9659412-CDS-H-paniculata_contig23396:1969..2047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23396 1970..2047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23396.6312.1

>prot_H-paniculata_contig23396.6312.1 ID=prot_H-paniculata_contig23396.6312.1|Name=mRNA_H-paniculata_contig23396.6312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MAEISKKMKGSKLRNFPQGRLVDQVVLVGGATRMPSKLVAGITGVTPKRT
VNPDQAVALGAAAFAGILEGEVEGQEVLTAWQASVYRMMAMSGLMQ*
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mRNA from alignment at H-paniculata_contig23396:431..2047+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23396.6312.1 ID=mRNA_H-paniculata_contig23396.6312.1|Name=mRNA_H-paniculata_contig23396.6312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1617bp|location=Sequence derived from alignment at H-paniculata_contig23396:431..2047+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCTTCATCCATGGCGGAAATTTCCAAGAAAATGAAGGGCTCGAAACT CCGAAACTTTCCGCAGGGGCGATTAGTTGACCAAGTGGTGCTGGTGGGGG GTGCAACGAGAATGCCATCTGTGCAGGCAAGCTACTTTATGCCACTGAAC TGTAAAACCCTAGGATCATGTAGCCTTGGGTCAGATATTACGGCCAAGCT TCACTTCCTTCAGATGACATCCGCTGTTATGTTTGTGCTCAAATGGCGGG GCGAAACGTGATTTACAGTAGCCGCTAGCTGCGGCAGGTACAACGCCTAG ACTGCGCTGTTCGGGGCAAAAGCCCACAACGAGACGAGTTGTCTTTCTGT AGCTCCTTCGTTTTTGTGTCGCTTGCTTTGAAGGAGTAGGTTCGGCTTCA CGAAATGACATGTTGCCAAGATGCAGTCACGAAGCGGTCTGGTTTCAACC CATCGCTGTATGTTGGCCAACAGTGGGACCTAGACGGGCGGGAGTATGTA TTGACTCGCCCACCCCGCGTCATGAAGTTGACGATCCAATGCATTTTTTT CAAGGTGTCAACTAGGCTGTGCCGTCTGATCTCGGAGCCCTTTCAACGCT CAGTACAGTGCATGATTTTAGAGGGCCCAAATTGTGAATCTAATAGGAAT GTTCCTGTGCCCCTTCCTTCTCTTTTCCACATATTCATGCTATCTACCGC TGGATGCCATCGCGAATTTATCAGAAACTTGTTGCGGGAATCACAGGCGT GACGCCTAAGCGGACCGTGAACCCGGACCAAGCGGTTGCGTTAGGCGCGG CCGCGTTCGCCGGCATCTTGGAGGGGGAGGTAAGTGAAGGAATTATTTTT TGGTGTACTGCTGTACTCGTGTGGTGATCCGAACGTAACTCAGCACACGT ATGGTCAAGCTGAACGTGATGTAGTCGCAGACATCCACAGGCGCAAACCG TATCCGTATCATGGGATACTCTGAATTATTCTTCAGTTCCATTACCATGA GTGTTTTGTGTCTATTGCCGAAGGCAGAAATCCCTCTTATATCATCGCCT GGCTCGCGGTAATCCTCAGGTGTCATAGTGCGGCGGCGACGGTAGGTGCT TCGAGGTCGATGTGACTGAACAGAACCCCCTGGCTTGTTTTTGTCGGGAT CGCATCAGATTAGATTAGTCGACTGTGTCTCCGAGCGATGCTTCCCGAAG AATCAAGCCGCGGAGGTGTTGCTGAACGATCGATCCGACGGGTTTGAAAC GACTGCTGCAGTAGTTCCGTGTGTGGGATCTTTGAGTAAGAAACTAGCGT AGCGCCGCCGATCGGCAATGGGGTTATGCATGTATGCTATTCTCAGCGTG TCAAGTTAGGGGCGTGTCCAGAGGCAACGACCTTGCATTGACAAGACTGG AACCTATCTCTTACTCCGAATATAACGCGTGCCGGCCGTCCGAATCTCTT TGTTTCAAGAGAATTTCACTTCATGAAATCTTTTGTGCCTTATTTATATA TGTGTCTTGTGTTTTCGTGCGTCGCAAAAAAACAATCAGGTTGAAGGGCA GGAGGTGTTGACAGCCTGGCAAGCTTCCGTCTATCGCATGATGGCGATGT CGGGCCTGATGCAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23396:431..2047+

>mRNA_H-paniculata_contig23396.6312.1 ID=mRNA_H-paniculata_contig23396.6312.1|Name=mRNA_H-paniculata_contig23396.6312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig23396:431..2047+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGAAATTTCCAAGAAAATGAAGGGCTCGAAACTCCGAAACTTTCC
GCAGGGGCGATTAGTTGACCAAGTGGTGCTGGTGGGGGGTGCAACGAGAA
TGCCATCTATGGCGGAAATTTCCAAGAAAATGAAGGGCTCGAAACTCCGA
AACTTTCCGCAGGGGCGATTAGTTGACCAAGTGGTGCTGGTGGGGGGTGC
AACGAGAATGCCATCTAAACTTGTTGCGGGAATCACAGGCGTGACGCCTA
AGCGGACCGTGAACCCGGACCAAGCGGTTGCGTTAGGCGCGGCCGCGTTC
GCCGGCATCTTGGAGGGGGAGAAACTTGTTGCGGGAATCACAGGCGTGAC
GCCTAAGCGGACCGTGAACCCGGACCAAGCGGTTGCGTTAGGCGCGGCCG
CGTTCGCCGGCATCTTGGAGGGGGAGGTTGAAGGGCAGGAGGTGTTGACA
GCCTGGCAAGCTTCCGTCTATCGCATGATGGCGATGTCGGGCCTGATGCA
GTGAGTTGAAGGGCAGGAGGTGTTGACAGCCTGGCAAGCTTCCGTCTATC
GCATGATGGCGATGTCGGGCCTGATGCAGTGA
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