prot_H-paniculata_contig23394.6311.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig23394.6311.1
Unique Name	prot_H-paniculata_contig23394.6311.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	121

Homology

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BLAST of mRNA_H-paniculata_contig23394.6311.1 vs. uniprot
Match: A0A6A4AQ35_9STRA (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4AQ35_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.930e-23
Identity = 48/108 (44.44%), Postives = 74/108 (68.52%), Query Frame = 0

Query:    3 KSFGGCRFATIFVDDYSRMLKVYTLRLKSEALWALKQFERDIAKANGLRVRRLRLGQGGEYTGKPFRQFCAENGIKQEFSAAYTPLQNGVAERSWRXXXXXXSIFEMA 110
            K+ GGC +A +F+DD+SR + VY ++ K+E L  LK F+ D+  A G +++R+R G GGEYTG+ F+++ ++ GI+ E +  YTP QNG+AER+ R      S+ EMA
Sbjct:  106 KTPGGCTYAVMFIDDFSRHVTVYFMKKKAEVLEKLKMFKTDMENATGRKIKRIRSGNGGEYTGRLFKEYLSKQGIRHEKTLPYTPQQNGLAERTNR------SLVEMA 207

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BLAST of mRNA_H-paniculata_contig23394.6311.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.080e-23
Identity = 49/109 (44.95%), Postives = 72/109 (66.06%), Query Frame = 0

Query:    3 KSFGGCRFATIFVDDYSRMLKVYTLRLKSEALWALKQFERDIAKANGLRVRRLRLGQGGEYTGKPFRQFCAENGIKQEFSAAYTPLQNGVAERSWRXXXXXXSIFEMAR 111
            K+ GGC +A  F+DD+SR + VY ++ K+E L   K+FE D+  A G +++RLR   GGEYTG+ F+++ ++ GI+ E +  YTP QNG+AER  R      S+ EMAR
Sbjct:   58 KTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNR------SLVEMAR 160

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BLAST of mRNA_H-paniculata_contig23394.6311.1 vs. uniprot
Match: A0A6A3G5S7_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3G5S7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.400e-22
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 0

Query:    3 KSFGGCRFATIFVDDYSRMLKVYTLRLKSEALWALKQFERDIAKANGLRVRRLRLGQGGEYTGKPFRQFCAENGIKQEFSAAYTPLQNGVAERSWRXXXXXXSIFEMAR 111
            K+ GGC +A  F+DD+SR + VY ++ KSE L   K F+ D+  A G ++RRLR   GGEYTG+ F++  ++ GI+ E +  YTP QNG+AER  R      S+ EMAR
Sbjct:  109 KTPGGCTYAVTFIDDFSRHVTVYFMKKKSEVLEKFKMFKADMENATGRKIRRLRSDNGGEYTGRLFKECLSKQGIRHEKTVPYTPQQNGLAERMNR------SLVEMAR 211

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BLAST of mRNA_H-paniculata_contig23394.6311.1 vs. uniprot
Match: A0A6A4CGC1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CGC1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.600e-22
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 0

Query:    3 KSFGGCRFATIFVDDYSRMLKVYTLRLKSEALWALKQFERDIAKANGLRVRRLRLGQGGEYTGKPFRQFCAENGIKQEFSAAYTPLQNGVAERSWRXXXXXXSIFEMAR 111
            K+ GGC +A  F+DD+SR + VY ++ K+E L   K+FE D+  A G +++RLR   GGEYTG+ F+++ ++ GI+ E +  YTP QNG+AER  R      SI EMAR
Sbjct:   34 KTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNR------SIVEMAR 136

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BLAST of mRNA_H-paniculata_contig23394.6311.1 vs. uniprot
Match: A0A6A3GEZ0_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GEZ0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.980e-22
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 0

Query:    3 KSFGGCRFATIFVDDYSRMLKVYTLRLKSEALWALKQFERDIAKANGLRVRRLRLGQGGEYTGKPFRQFCAENGIKQEFSAAYTPLQNGVAERSWRXXXXXXSIFEMAR 111
            K+ GGC +A  F+DD+SR + VY ++ K+E L   K F+ D+  A G +++RLR   GGEYTG+ F+++ ++ GI+ E +  YTP QNG+AER  R      SI EMAR
Sbjct:   58 KTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNR------SIVEMAR 160

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BLAST of mRNA_H-paniculata_contig23394.6311.1 vs. uniprot
Match: A0A6A3LQ24_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LQ24_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.840e-22
Identity = 42/93 (45.16%), Postives = 64/93 (68.82%), Query Frame = 0

Query:    3 KSFGGCRFATIFVDDYSRMLKVYTLRLKSEALWALKQFERDIAKANGLRVRRLRLGQGGEYTGKPFRQFCAENGIKQEFSAAYTPLQNGVAER 95
            K+ GGC +A  F+DD+SR + VY ++ K+E L   K F+ D+  A G +++RLR   GGEYTG+ F+++ ++ GI+ E +  YTP QNG+AER
Sbjct:   34 KTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAER 126

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BLAST of mRNA_H-paniculata_contig23394.6311.1 vs. uniprot
Match: A0A6A3V4F8_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V4F8_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.990e-22
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 0

Query:    3 KSFGGCRFATIFVDDYSRMLKVYTLRLKSEALWALKQFERDIAKANGLRVRRLRLGQGGEYTGKPFRQFCAENGIKQEFSAAYTPLQNGVAERSWRXXXXXXSIFEMAR 111
            K+ GGC +A  F+DD+SR + VY ++ K+E L   K F+ D+  A G +++RLR   GGEYTG+ F+++ A+ GI+ E +  YTP QNG+AER  R      S+ EMAR
Sbjct:  159 KTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLAKQGIRHEKTVPYTPQQNGLAERMNR------SLVEMAR 261

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BLAST of mRNA_H-paniculata_contig23394.6311.1 vs. uniprot
Match: A0A6A3GFE6_9STRA (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GFE6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.210e-22
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 0

Query:    3 KSFGGCRFATIFVDDYSRMLKVYTLRLKSEALWALKQFERDIAKANGLRVRRLRLGQGGEYTGKPFRQFCAENGIKQEFSAAYTPLQNGVAERSWRXXXXXXSIFEMAR 111
            K+ GGC +A  F+DD+SR + VY ++ KSE L   K F+ D+  A G +++RLR   GGEYTG+ F+++ ++ GI+ E +  YTP QNG+AER  R      S+ EMAR
Sbjct:  190 KTPGGCTYAVTFIDDFSRHVTVYFMKKKSEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNR------SLVEMAR 292

[Close]

BLAST of mRNA_H-paniculata_contig23394.6311.1 vs. uniprot
Match: A0A6A4B1T5_9STRA (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4B1T5_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.420e-22
Identity = 47/109 (43.12%), Postives = 71/109 (65.14%), Query Frame = 0

Query:    3 KSFGGCRFATIFVDDYSRMLKVYTLRLKSEALWALKQFERDIAKANGLRVRRLRLGQGGEYTGKPFRQFCAENGIKQEFSAAYTPLQNGVAERSWRXXXXXXSIFEMAR 111
            K+ GGC +A   +DD+SR + VY ++ K+E L   K+F+ D+  A G +++RLR   GGEYTG+ F+++ ++ GI+ E +  YTP QNG+AER  R      S+ EMAR
Sbjct:    7 KTSGGCTYAVTLIDDFSRHVTVYFMKKKAEVLDKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNR------SLVEMAR 109

[Close]

BLAST of mRNA_H-paniculata_contig23394.6311.1 vs. uniprot
Match: A0A6A3GJG5_9STRA (Integrase catalytic domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GJG5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.780e-22
Identity = 48/109 (44.04%), Postives = 72/109 (66.06%), Query Frame = 0

Query:    3 KSFGGCRFATIFVDDYSRMLKVYTLRLKSEALWALKQFERDIAKANGLRVRRLRLGQGGEYTGKPFRQFCAENGIKQEFSAAYTPLQNGVAERSWRXXXXXXSIFEMAR 111
            K+ GGC +A  F+DD+SR + VY ++ K+E L   K+F+ D+  A G +++RLR   GGEYTG+ F+++ ++ GI+ E +  YTP QNG+AER  R      S+ EMAR
Sbjct:   58 KTPGGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFKADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNR------SLVEMAR 160

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig23394.6311.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig23394.6311.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6A4AQ35_9STRA	2.930e-23	44.44	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6G0JTE1_9STRA	3.080e-23	44.95	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A6A3G5S7_9STRA	1.400e-22	45.87	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A6A4CGC1_9STRA	1.600e-22	45.87	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A6A3GEZ0_9STRA	1.980e-22	44.95	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6A3LQ24_9STRA	2.840e-22	45.16	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6A3V4F8_9STRA	2.990e-22	44.95	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A6A3GFE6_9STRA	5.210e-22	44.95	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6A4B1T5_9STRA	5.420e-22	43.12	Integrase catalytic domain-containing protein n=4 ...	[more]
A0A6A3GJG5_9STRA	5.780e-22	44.04	Integrase catalytic domain-containing protein n=5 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 10..101 e-value: 1.7E-17 score: 63.7
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..95 score: 11.136
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..117 e-value: 4.5E-17 score: 63.8
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 4..112
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 4..112
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..103

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig23394	contig	H-paniculata_contig23394:774..1136 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig23394.6311.1	mRNA_H-paniculata_contig23394.6311.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig23394 657..1226 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig23394.6311.1 ID=prot_H-paniculata_contig23394.6311.1|Name=mRNA_H-paniculata_contig23394.6311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MDKSFGGCRFATIFVDDYSRMLKVYTLRLKSEALWALKQFERDIAKANGL
RVRRLRLGQGGEYTGKPFRQFCAENGIKQEFSAAYTPLQNGVAERSWRSW
RSWRSIFEMARANMITNMGR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf