prot_H-paniculata_contig2338.6309.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2338.6309.1
Unique Nameprot_H-paniculata_contig2338.6309.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length414
Homology
BLAST of mRNA_H-paniculata_contig2338.6309.1 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 6.240e-22
Identity = 84/237 (35.44%), Postives = 112/237 (47.26%), Query Frame = 0
Query:    1 VRYCDAHQGPFGLDVNGSSNTGELKMILAQVVMIRRLKEEVLSDMLPEKDRQMVDVPCDAEIMKEVSDLTSQKAEIEKAIKSADDDSEKMRLRGMQQGVTSQLYCATGKAKIKGVLAHLTRLLLDDEVADSAVTPGKGDS----GDGGAKKTFVKQENP--------------------TSSPPLSKPAA------SVSSSGG-------AAEWACYSCTYTNPVSKKRCELCKSAR 200
            VRYC A QGPFGLDV GSSN+ ELKMIL   +M+RRLKEEV                         ++L  QK  I+ ++ S  DD+E  RL G  + +T++LY  +G+AKI+GVL HL R +L +E+      PG G S    G GG                               +++PPL +         +VS   G         EWAC  CTY NP S++ C+LC + R
Sbjct:  294 VRYCAAFQGPFGLDVTGSSNSAELKMILEAAIMVRRLKEEV-------------------------AELMEQKEAIKSSLGSVADDAEMGRLVGQMKSLTTKLYIESGRAKIQGVLDHL-RGMLTEELPAEGHPPGGGVSPNRTGGGGTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATPPLPRGKGPGGLWGNVSVDDGDEGXXXXXXEWACSRCTYHNPASQRECDLCDTPR 504          
BLAST of mRNA_H-paniculata_contig2338.6309.1 vs. uniprot
Match: A0A2D4EQA4_MICCO (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4EQA4_MICCO)

HSP 1 Score: 79.3 bits (194), Expect = 3.660e-13
Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 0
Query:    1 VRYCDAHQGPFGLDVNGSSNTGELKMILAQVVMIRRLKEEVLSDMLPEKDRQMVDVPCDAEIMKEVSDLTSQKAEIEKAIKSADDDSEKMRLRGMQQGVTSQLYCATGKAKIKGVLAHLTRLL 123
            VRYCDA QGP+G D +GSSN GELK++L + VMIRRLK +VLS  LP K R+MV +  +    +  ++L +   E+ K  KS  +  E + +           Y  T +AKI  +L ++  LL
Sbjct:   45 VRYCDAKQGPWGWDYSGSSNLGELKLLLEETVMIRRLKSDVLSQ-LPAKQRKMVVITPEGINTRTKAELAAAAKEMAKGFKSKQEQKEALIV----------FYNKTSEAKIHCILEYILDLL 156          
BLAST of mRNA_H-paniculata_contig2338.6309.1 vs. uniprot
Match: L1IS15_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IS15_GUITC)

HSP 1 Score: 79.7 bits (195), Expect = 1.990e-12
Identity = 44/123 (35.77%), Postives = 75/123 (60.98%), Query Frame = 0
Query:    2 RYCDAHQGPFGLDVNGSSNTGELKMILAQVVMIRRLKEEVLSDMLPEKDRQMVDVPCDAEIMKEVSDLTSQKAEIEKAIKSADDDSE-KMRLRGMQQGVTSQLYCATGKAKIKGVLAHLTRLL 123
            RYCDAHQGPFGL+ +G+SN  EL ++L Q  M+RRLK++VL+  LP K RQ + +       K  +    +  E+E+  +  ++DSE + R +  ++ +  ++Y  TG AK++ +  ++  L+
Sbjct:  257 RYCDAHQGPFGLETSGASNLEELHVLLDQHTMVRRLKKDVLTQ-LPAKRRQKILIKISEAESKRFATEMDKLKELERVTQDEEEDSEARFRAQSRKKALIMKMYVDTGVAKLQAIQEYVADLI 378          
BLAST of mRNA_H-paniculata_contig2338.6309.1 vs. uniprot
Match: A0A670YCP3_PSETE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=4 Tax=Elapidae TaxID=8602 RepID=A0A670YCP3_PSETE)

HSP 1 Score: 79.7 bits (195), Expect = 3.010e-12
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 0
Query:    1 VRYCDAHQGPFGLDVNGSSNTGELKMILAQVVMIRRLKEEVLSDMLPEKDRQMVDVPCDAEIMKEVSDLTSQKAEIEKAIKSADDDSEKMRLRGMQQGVTSQLYCATGKAKIKGVLAHLTRLL 123
            VRYCDA QGP+G D +GSSN GELK++L + VMIRRLK +VLS  LP K R+MV V  +    +  ++L +   E+ K  KS  +  E + +           Y  T +AKI  +L ++  LL
Sbjct:  661 VRYCDAKQGPWGWDYSGSSNLGELKLLLEETVMIRRLKSDVLSQ-LPAKQRKMVVVTPEGINSRTKAELAAAAKEMAKGFKSKQEQKEALIV----------FYNKTSEAKIHCILEYILDLL 772          
BLAST of mRNA_H-paniculata_contig2338.6309.1 vs. uniprot
Match: A0A6I9Z0A7_9SAUR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=6 Tax=Colubridae TaxID=8578 RepID=A0A6I9Z0A7_9SAUR)

HSP 1 Score: 79.3 bits (194), Expect = 4.000e-12
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 0
Query:    1 VRYCDAHQGPFGLDVNGSSNTGELKMILAQVVMIRRLKEEVLSDMLPEKDRQMVDVPCDAEIMKEVSDLTSQKAEIEKAIKSADDDSEKMRLRGMQQGVTSQLYCATGKAKIKGVLAHLTRLL 123
            VRYCDA Q P+G D +GSSN GELK++L + +MIRRLK EVLS  LP K R+M+ +  +    +  ++LT+   E+ K  KS  +  E + +           Y  T +AKI  +L ++  LL
Sbjct:  658 VRYCDAKQRPWGWDYSGSSNLGELKLLLEETIMIRRLKSEVLSQ-LPAKQRKMIVITPEGIDTRTKAELTAAAKEMAKGFKSKQEQKEALLI----------FYNKTSEAKIHCILEYILDLL 769          
BLAST of mRNA_H-paniculata_contig2338.6309.1 vs. uniprot
Match: SMAL1_XENTR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=7 Tax=Xenopus tropicalis TaxID=8364 RepID=SMAL1_XENTR)

HSP 1 Score: 77.0 bits (188), Expect = 2.180e-11
Identity = 51/123 (41.46%), Postives = 69/123 (56.10%), Query Frame = 0
Query:    1 VRYCDAHQGPFGLDVNGSSNTGELKMILAQVVMIRRLKEEVLSDMLPEKDRQMVDVPCDAEIMKEVSDLTSQKAEIEKAIKSADDDSEKMRLRGMQQGVTSQLYCATGKAKIKGVLAHLTRLL 123
            +RYCDA Q P+G D +GSSN  ELK++L + +MIRRLK EVLS  LP K R+MV V  +    K  + L +   E+ K  KS   + E + L           Y  T +AKI+ VL ++  LL
Sbjct:  613 IRYCDAKQMPWGWDYSGSSNLNELKLLLEESIMIRRLKSEVLSQ-LPAKQRKMVVVAPEGITAKTKAALAAAAKEMAKGFKSKVQEKEALLL----------FYNRTAEAKIRSVLEYIMDLL 724          
BLAST of mRNA_H-paniculata_contig2338.6309.1 vs. uniprot
Match: A0A482SB64_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SB64_9ARCH)

HSP 1 Score: 77.0 bits (188), Expect = 2.190e-11
Identity = 50/131 (38.17%), Postives = 74/131 (56.49%), Query Frame = 0
Query:    2 RYCDAHQGPFG---LDVNGSSNTGELKMILAQVVMIRRLKEEVLSDMLPEKDRQMVDVPCDAEIMKEVSDLTSQKAEIEKAIKSADDDSEKMRLRGMQQGVTSQLYCATGKAKIKGVLAHLTRLLLDDEVA 129
            RYCDA    F    LDV GSSN  ELK +L  +VMIRRLK  VL+  LP+K R++V V  D + + E+  +  Q + +E+      D   KMRL   ++ + +Q Y  TG+AKIK +  ++   + +  +A
Sbjct:  170 RYCDAKPAKFNTSFLDVKGSSNEQELKCLLEGLVMIRRLKSNVLT--LPDKVRKVVYVDIDDDKVNEIKSIQRQLSHLEQQYNQTVDSEIKMRLGKEKESLLTQYYKVTGQAKIKSIEKNIMFYIREARMA 298          
BLAST of mRNA_H-paniculata_contig2338.6309.1 vs. uniprot
Match: SMAL1_XENLA (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=2 Tax=Xenopus laevis TaxID=8355 RepID=SMAL1_XENLA)

HSP 1 Score: 77.0 bits (188), Expect = 2.190e-11
Identity = 51/123 (41.46%), Postives = 69/123 (56.10%), Query Frame = 0
Query:    1 VRYCDAHQGPFGLDVNGSSNTGELKMILAQVVMIRRLKEEVLSDMLPEKDRQMVDVPCDAEIMKEVSDLTSQKAEIEKAIKSADDDSEKMRLRGMQQGVTSQLYCATGKAKIKGVLAHLTRLL 123
            +RYCDA Q P+G D +GSSN  ELK++L + +MIRRLK EVLS  LP K R+MV V  +    K  + L +   E+ K  KS   + E + L           Y  T +AKI+ VL ++  LL
Sbjct:  631 IRYCDAKQMPWGWDYSGSSNLNELKLLLEESIMIRRLKSEVLSQ-LPAKQRKMVVVAPEGITAKTKAALAAAAKEMAKGFKSKVQEKEALLL----------FYNRTAEAKIRSVLEYIIDLL 742          
BLAST of mRNA_H-paniculata_contig2338.6309.1 vs. uniprot
Match: UPI001E85CB09 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI001E85CB09)

HSP 1 Score: 76.3 bits (186), Expect = 3.920e-11
Identity = 47/123 (38.21%), Postives = 72/123 (58.54%), Query Frame = 0
Query:    1 VRYCDAHQGPFGLDVNGSSNTGELKMILAQVVMIRRLKEEVLSDMLPEKDRQMVDVPCDAEIMKEVSDLTSQKAEIEKAIKSADDDSEKMRLRGMQQGVTSQLYCATGKAKIKGVLAHLTRLL 123
            +RYCDA + P+G D +GSSN GELK++L + +MIRRLK +VLS  LP K R+MV V  D    +  ++L +   ++ K  KS  ++ E + +           Y  T +AKI+ V+ ++  LL
Sbjct:  653 LRYCDAKKKPWGWDYSGSSNLGELKLLLEESIMIRRLKSDVLSQ-LPAKQRRMVVVAPDGINARTKAELAAAAKQMSKGYKSKQEEKEALII----------FYNRTAEAKIRSVIEYILDLL 764          
BLAST of mRNA_H-paniculata_contig2338.6309.1 vs. uniprot
Match: A0A452I1I6_9SAUR (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 n=15 Tax=Testudinoidea TaxID=8486 RepID=A0A452I1I6_9SAUR)

HSP 1 Score: 75.9 bits (185), Expect = 5.080e-11
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 0
Query:    1 VRYCDAHQGPFGLDVNGSSNTGELKMILAQVVMIRRLKEEVLSDMLPEKDRQMVDVPCDAEIMKEVSDLTSQKAEIEKAIKSADDDSEKMRLRGMQQGVTSQLYCATGKAKIKGVLAHLTRLL 123
            +RYCDA + P+G D +GSSN GELK++L + VMIRRLK +VLS  LP K R+MV V  +    K  ++L +   E+ K  +S   + E + L           Y  T +AKI+ V+ ++  LL
Sbjct:  650 LRYCDAKKMPWGWDYSGSSNLGELKLLLEESVMIRRLKSDVLSQ-LPAKQRKMVVVAPEGMNAKTKAELAATAKEMAKGYRSKQKEKEALLL----------FYNRTAEAKIRSVIEYILDLL 761          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2338.6309.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK86_ECTSI6.240e-2235.44Harp (Smarcal1)-related n=1 Tax=Ectocarpus silicul... [more]
A0A2D4EQA4_MICCO3.660e-1340.65Helicase C-terminal domain-containing protein (Fra... [more]
L1IS15_GUITC1.990e-1235.77Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A670YCP3_PSETE3.010e-1241.46SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A6I9Z0A7_9SAUR4.000e-1239.84SWI/SNF-related matrix-associated actin-dependent ... [more]
SMAL1_XENTR2.180e-1141.46SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A482SB64_9ARCH2.190e-1138.17DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906... [more]
SMAL1_XENLA2.190e-1141.46SWI/SNF-related matrix-associated actin-dependent ... [more]
UPI001E85CB093.920e-1138.21SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A452I1I6_9SAUR5.080e-1139.84SWI/SNF-related matrix-associated actin-dependent ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 66..86
NoneNo IPR availableGENE3D2.20.28.140coord: 171..215
e-value: 2.3E-7
score: 32.4
NoneNo IPR availablePANTHERPTHR45766FAMILY NOT NAMEDcoord: 2..126
IPR030101SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1PANTHERPTHR45766:SF3SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1coord: 2..126
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 177..196
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 170..202
score: 9.202
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 174..200

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2338contigH-paniculata_contig2338:12519..17076 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2338.6309.1mRNA_H-paniculata_contig2338.6309.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2338 12519..17076 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2338.6309.1 ID=prot_H-paniculata_contig2338.6309.1|Name=mRNA_H-paniculata_contig2338.6309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=414bp
VRYCDAHQGPFGLDVNGSSNTGELKMILAQVVMIRRLKEEVLSDMLPEKD
RQMVDVPCDAEIMKEVSDLTSQKAEIEKAIKSADDDSEKMRLRGMQQGVT
SQLYCATGKAKIKGVLAHLTRLLLDDEVADSAVTPGKGDSGDGGAKKTFV
KQENPTSSPPLSKPAASVSSSGGAAEWACYSCTYTNPVSKKRCELCKSAR
PTSGKISPPPATDTTCPPPVTAENVIAPAAAAAAVAMARKGARKRRSVDD
IGSGRRASTGSDEEDDGAWMMDSDDGECGDGGGGGGGGGGVSGGSDRRRV
LSRRNCVLNAPHDRAAAEGNDGMEGGVRGSLRQRRLALDSRPEEGSGGQR
ARREDQGEKAAGAKAEAGGGGGGGGGDCSSSDDFAITLSGGGTISGRRGS
GGGQRLSGGSDASC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030101HARP(SMARCAL1)
IPR001876Znf_RanBP2
IPR036443Znf_RanBP2_sf