mRNA_H-paniculata_contig23366.6304.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23366.6304.1
Unique NamemRNA_H-paniculata_contig23366.6304.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23366.6304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23366contigH-paniculata_contig23366:1398..2051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size656
Cds size378
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.476353-UTR-H-paniculata_contig23366:1397..16731622929662.476353-UTR-H-paniculata_contig23366:1397..1673Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23366 1398..1673 +
1691480956.6250813-UTR-H-paniculata_contig23366:1397..16731691480956.6250813-UTR-H-paniculata_contig23366:1397..1673Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23366 1398..1673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.4898689-CDS-H-paniculata_contig23366:1673..20511622929662.4898689-CDS-H-paniculata_contig23366:1673..2051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23366 1674..2051 +
1691480956.639278-CDS-H-paniculata_contig23366:1673..20511691480956.639278-CDS-H-paniculata_contig23366:1673..2051Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23366 1674..2051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23366.6304.1prot_H-paniculata_contig23366.6304.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23366 1674..2051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23366.6304.1

>prot_H-paniculata_contig23366.6304.1 ID=prot_H-paniculata_contig23366.6304.1|Name=mRNA_H-paniculata_contig23366.6304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MLCRPNRNGSRPSFYIAKRQGDFTDSSTLNLMTPRYPSASTNCTRPSSIP
NCAPKSKLHTLRRPSPSRDRCRHQLAPRTVNTQHMRTRRLLDSPAPRARE
SDKPWADRKTPILHRHRPRFLVSLRR
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mRNA from alignment at H-paniculata_contig23366:1398..2051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23366.6304.1 ID=mRNA_H-paniculata_contig23366.6304.1|Name=mRNA_H-paniculata_contig23366.6304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=654bp|location=Sequence derived from alignment at H-paniculata_contig23366:1398..2051+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGAAGACAAACACCAAAATTCATCGACATGGCGTTCCTCATCGTCCTCC
TCGAAGTCACACTACTATTATACCTATAGAGCGCCGCTTGCAGCACGTCC
AAGGGTAATTTCGACATACTCTTGGCCCCCTCCAACTATTTATCTCGTGT
GCTGCTGCGAAGTGAAGAGAATTGAGGGTAGAAACCGAAATCAAAATGCT
CTCCCGCTTGCCATGCTCTGCACAGATTCACAATCTCCCACAAACGTAAT
GTCTCCAAGCAGGCATTAGATCTATAATGTTGTGTCGCCCTAACAGAAAC
GGGTCAAGACCTTCTTTCTACATCGCTAAAAGGCAAGGAGATTTCACGGA
CTCCTCTACCTTGAATCTCATGACCCCAAGATACCCATCAGCATCGACGA
ATTGCACGAGGCCGAGCAGTATACCAAATTGTGCACCTAAGTCAAAACTG
CATACTCTACGCCGCCCCTCTCCCTCACGAGACAGATGCCGTCATCAACT
CGCACCACGAACTGTGAATACACAACACATGAGAACTAGGCGGCTACTCG
ATTCCCCCGCGCCGAGAGCACGTGAATCTGACAAGCCTTGGGCAGACAGG
AAAACACCAATTCTCCATCGCCATCGCCCCCGTTTCCTAGTCTCACTGCG
CAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig23366:1398..2051+

>mRNA_H-paniculata_contig23366.6304.1 ID=mRNA_H-paniculata_contig23366.6304.1|Name=mRNA_H-paniculata_contig23366.6304.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig23366:1398..2051+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTGTCGCCCTAACAGAAACGGGTCAAGACCTTCTTTCTACATCGC
TAAAAGGCAAGGAGATTTCACGGACTCCTCTACCTTGAATCTCATGACCC
CAAGATACCCATCAGCATCGACGAATTGCACGAGGCCGAGCAGTATACCA
AATTGTGCACCTAAGTCAAAACTGCATACTCTACGCCGCCCCTCTCCCTC
ACGAGACAGATGCCGTCATCAACTCGCACCACGAACTGTGAATACACAAC
ACATGAGAACTAGGCGGCTACTCGATTCCCCCGCGCCGAGAGCACGTGAA
TCTGACAAGCCTTGGGCAGACAGGAAAACACCAATTCTCCATCGCCATCG
CCCCCGTTTCCTAGTCTCACTGCGCAGGATGTTGTGTCGCCCTAACAGAA
ACGGGTCAAGACCTTCTTTCTACATCGCTAAAAGGCAAGGAGATTTCACG
GACTCCTCTACCTTGAATCTCATGACCCCAAGATACCCATCAGCATCGAC
GAATTGCACGAGGCCGAGCAGTATACCAAATTGTGCACCTAAGTCAAAAC
TGCATACTCTACGCCGCCCCTCTCCCTCACGAGACAGATGCCGTCATCAA
CTCGCACCACGAACTGTGAATACACAACACATGAGAACTAGGCGGCTACT
CGATTCCCCCGCGCCGAGAGCACGTGAATCTGACAAGCCTTGGGCAGACA
GGAAAACACCAATTCTCCATCGCCATCGCCCCCGTTTCCTAGTCTCACTG
CGCAGG
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