mRNA_H-paniculata_contig2336.6299.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2336.6299.1
Unique NamemRNA_H-paniculata_contig2336.6299.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2336.6299.1 vs. uniprot
Match: D7FR53_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR53_ECTSI)

HSP 1 Score: 317 bits (813), Expect = 2.060e-100
Identity = 183/240 (76.25%), Postives = 208/240 (86.67%), Query Frame = 2 
Query:  176 MRKNGFEAPLEPLQMLTWLLLLIIVGGFYALVIPALPTALAFAAGATYFVLASSSVMAGIIACHIDPIDPNVRRFHQGDSVAGSSQDKTFCFLCQLHVNKGSRHCRXXXXXXXXXXXXXXXXXXXXXRGNYSYFVALLLATFFMTGLQLGLSAWFAFLYHSGNATFRERVGNEYERLGRSGHIVLIYVFAVLVIPFFGLLAQLLGFHVMLISQDLTTYDYIVQEQRKERERKERRKKFDK 895
            MRKNGFEAPLEPLQ+LTW+LLL+IVGGFY+ ++PAL    A  AG  Y VLASS+V+AGI+AC  DPIDPNVRRFHQG++ AGS+ DKTFCFLCQLHVNKGSRHCR XXXXXXXXXXXXXXXXXXXXR NY YFV LL++TFFMT +QLG+SAWFA +YHS NA F +RV   Y RLG +GHIVL+Y FAVLV+PF GLLAQLLGFH+MLIS++LTTYDYIVQEQRKERERKERR+  DK
Sbjct:    1 MRKNGFEAPLEPLQVLTWVLLLLIVGGFYSFIVPALARVWAIVAGLVYGVLASSTVLAGILACLKDPIDPNVRRFHQGETAAGSAADKTFCFLCQLHVNKGSRHCRYXXXXXXXXXXXXXXXXXXXXRSNYRYFVTLLVSTFFMTSIQLGISAWFAIMYHSDNAAFSDRVEGRYARLGGTGHIVLVYAFAVLVLPFLGLLAQLLGFHIMLISRNLTTYDYIVQEQRKERERKERRRILDK 240
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BLAST of mRNA_H-paniculata_contig2336.6299.1 vs. uniprot
Match: A0A835YWP3_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP3_9STRA)

HSP 1 Score: 190 bits (482), Expect = 8.160e-52
Identity = 123/225 (54.67%), Postives = 156/225 (69.33%), Query Frame = 2 
Query:  200 PLEPLQMLTWLLLLIIVGGFYALVIPALPTALAFAAGATYFVLASSSVMAGIIACHIDPIDPNVRRFHQGDSVAGSS-QDKTFCFLCQLHVNKGSRHCRXXXXXXXXXXXXXXXXXXXXXRGNYSYFVALLLATFFMTGLQLGLSAWFAFLYH--SGNATFRERVGNEYERLGRSGHIVLIYVFAVLVIPFFGLLAQLLGFHVMLISQDLTTYDYIVQEQRKERE 865
            PLEPLQ+ TW LLL+++  FYA+V+P L    A   G  Y V A    + G +AC +DP+D NV   H G   AGSS Q++TFCFLCQ+HVNKGSRHCR    XXXXXXXXXXXXXXX    NY YFV LL++T  +TGLQL LS W   L+H  S      +R+ + Y  L   G+I+++YVFAV+V+PF GLL QL+GFH+ML  + LTTYDYI++EQ++ERE
Sbjct:    2 PLEPLQVFTWSLLLVMIVEFYAIVVPGLERGPAIGLGCLYGVFAVGCTIMGFMACKVDPMDHNVGA-HAG---AGSSTQERTFCFLCQVHVNKGSRHCRYCDKXXXXXXXXXXXXXXXIGGTNYRYFVMLLVSTLGLTGLQLALSIWLIVLFHTQSEGDPLYQRIDDRYGSLSSDGYIIIVYVFAVMVLPFVGLLIQLIGFHMMLAREGLTTYDYIIREQKRERE 222
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BLAST of mRNA_H-paniculata_contig2336.6299.1 vs. uniprot
Match: A0A7S2UYM7_9STRA (Palmitoyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYM7_9STRA)

HSP 1 Score: 157 bits (397), Expect = 4.790e-39
Identity = 115/232 (49.57%), Postives = 148/232 (63.79%), Query Frame = 2 
Query:  179 RKNGFEAPLEPLQMLTWLLLLIIVGGFYALVIPALPTALAFAAGATYFVLASSSVMAGIIACHIDPIDPNVRRFHQGDSVAGSSQDKTFCFLCQLHVNKGSRHCRXXXXXXXXXXXXXXXXXXXXXRGNYSYFVALLLATFFMTGLQLGLSAWFAFLYHSGNATFRERVGNEYERLGRSGHIVLIY--VFAVLVIPFFGLLAQLLGFHVMLISQDLTTYDYIVQEQRKERER 868
            R NGF+ PLEPLQ++TW LL++++GGFY ++IP L        G  +      ++ AG +AC  DPIDPNV+   +G+   G   DK FC LC++HVNK S+H  XXXXXXXXXXXXXXXXXXX    NY YF+ LL+ TF  T L+LGL A     Y      F++ V + Y   G    +VL+   VFA  ++P   LL QL  FH MLI +DLTTYDYI++EQR+ERER
Sbjct:    9 RTNGFQRPLEPLQVVTWGLLILMIGGFYGIIIPPLEELYQIICGIIFGASTVGAIWAGFMACITDPIDPNVQEALKGNHSPGPHSDKLFCALCRVHVNKSSKHXXXXXXXXXXXXXXXXXXXXXIGAANYRYFIILLVFTFIFTLLELGLFARHISAYFVDKDGFQDSVRDAYGG-GSDPMVVLVLCLVFAAALVPVALLLGQLFFFHGMLIHEDLTTYDYIMREQRRERER 239
[Close]
BLAST of mRNA_H-paniculata_contig2336.6299.1 vs. uniprot
Match: A0A7S3YC54_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YC54_HETAK)

HSP 1 Score: 131 bits (330), Expect = 4.360e-30
Identity = 101/239 (42.26%), Postives = 141/239 (59.00%), Query Frame = 2 
Query:  170 RSMRKNGFEAPLEPLQMLTWLLLLIIVGGFYALVIPALPTALAFAAGATYFVLASSSVMAGIIACHIDPIDPNVRRFHQGDSVAGSSQDKTFCFLCQLHVNKGSRHCRXXXXXXXXXXXXXXXXXXXXXRGNYSYFVALLLATFFMTGLQLGLSAWFAFLYHSGNATFRERVGNEYERLGRS-GHIVLIYVFAVLVIPFFGLLAQLLGFHVMLISQDLTTYDYIVQEQRKERERKERRK 883
            R++RKNG EAP EPLQ+ TW LL  ++ GFY ++IP L   L    G  + +L   +V+A  +AC IDP D NV        V     D  +C  C  HVN+ S+H  XXXXXXXXXXXXXXXXXXX  + NY +F+ LL+ATF  T L+L +      +Y      ++ +V + Y       G ++  ++F V + P  GLL QL  FH+ L+ + LTTYDYI++EQ +E E + +R+
Sbjct:    5 RTVRKNGLEAPFEPLQIATWFLLATMIAGFYGVIIPPLSIVLQALLGIIFAILVVIAVVAAFLACWIDPSDDNVLGLATV-GVNNGGTDNIYCRFCATHVNRSSKHXXXXXXXXXXXXXXXXXXXXXIGKKNYRHFLVLLVATFAFTLLELAMFIHNVAVYFQDKDDYKTQVEDAYGASASPLGPLIASWIFIVALTPVAGLLGQLFFFHITLLREGLTTYDYIIREQTREHEARHQRR 242
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BLAST of mRNA_H-paniculata_contig2336.6299.1 vs. uniprot
Match: A0A7R9U7W5_9STRA (Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7W5_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.590e-23
Identity = 73/235 (31.06%), Postives = 118/235 (50.21%), Query Frame = 2 
Query:  176 MRKNGFEAPLEPLQMLTWLLLLIIVGGFYALVIPALPTALAFAAGATYFVLASSSVMAGIIACHIDPIDPNVRRFHQGDSVAGSSQDKTFCFLCQLHVNKGSRHCRXXXXXXXXXXXXXXXXXXXXXRGNYSYFVALLLATFFMTGLQLGLSAWFAFLYHSGNATFRERVGNEYER-LGRSGHIVLIYVFAVLVIPFFGLLAQLLGFHVMLISQDLTTYDYIVQEQRKERERKER 877
            MR NG + P   LQ+ TWLLL +++ GF+ +++P L    A  + A Y VL   +V  G   C I+P+DP + RF           + TFC L Q++V+K SRHCR                       NY +F + + A      + L L+ +   +Y +      +R+ + ++        + ++ V++VL++    L+ QL  FH+ LI   L+TY+YI+ EQR+ERER +R
Sbjct:    6 MRANGLQPPYSVLQISTWLLLPVLMSGFFVILLPTLSVVEAAVSTAVYSVLLCIAVFCGYKTCAINPVDPGLERFLSTGERPPGGVNTTFCALDQINVHKDSRHCRFCNKCVLGFDHHCKWLNTCIGTRNYRWFFSTVTAVVAFVLVHLALNGYVIAIYITDREDLEDRIEDGFDSGFPVDAFLAIVIVYSVLLLTVGLLMLQLWTFHLYLIYLGLSTYEYIISEQRRERERDQR 240
[Close]
BLAST of mRNA_H-paniculata_contig2336.6299.1 vs. uniprot
Match: A0A7S3ZJ70_9STRA (Palmitoyltransferase n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJ70_9STRA)

HSP 1 Score: 104 bits (259), Expect = 8.470e-21
Identity = 100/246 (40.65%), Postives = 135/246 (54.88%), Query Frame = 2 
Query:  176 MRKNGFEAPLEPLQMLTWLLLLIIVGGFYALVIPALP-TALAFAAGATYFVLASSSVMAGIIACHIDPIDPNV---------RRFHQGDSVA----GSSQDKTFCFLCQLHVNKGSRHCRXXXXXXXXXXXXXXXXXXXXXRGNYSYFVALLLATFFMTGLQLGLSAWFAFLY------HSGNATFRERVGNEYERLGRSGHIVLIYVFAVLVIPFFGLLAQLLGFHVMLISQDLTTYDYIVQEQR 853
            MR+NGF+ PL PLQ LTW L  +++  FY L++P LP  A  +A G  Y   A+++     I   +DP DP+V         R     + +A       +D   C+LCQ+HV   S+HCRXXXXXXXXXXXXXXXXXXX    NY YF+A++ +T   T +QL LS +            S  A    R     ER G    + L+  +A L++P   L+ QL  FH ML+ + LTTY+YI+ EQR
Sbjct:    1 MRENGFDYPLHPLQCLTWALFPVVLLDFYWLLLPLLPGEATRWAVGTVYTAAAATTFFCAWITAAVDPRDPSVAAAAPPATNRLARCCEPLALWPPPVGEDTCRCYLCQVHVFASSKHCRXXXXXXXXXXXXXXXXXXXVGAKNYGYFLAVIASTCVFTTMQLALSVYVVVELAVPDRRRSAVAARARRHAVGRER-GVDAVLALVCAYAALLVPLVVLIGQLALFHAMLVRRGLTTYEYILGEQR 245
[Close]
BLAST of mRNA_H-paniculata_contig2336.6299.1 vs. uniprot
Match: A0A7S3K685_9STRA (Palmitoyltransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K685_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.460e-20
Identity = 95/257 (36.96%), Postives = 139/257 (54.09%), Query Frame = 2 
Query:  176 MRKNGFEAPLEPLQMLTWLLLLIIVGGFYALVIPALPTALAFAAGATYFVLASSSVMAGIIACHIDPIDPNV---RRFHQGDSVAGS----------------------SQDKTF-CFLCQLHVNKGSRHCRXXXXXXXXXXXXXXXXXXXXXRGNYSYFVALLLATFFMTGLQLGLSAWFAFLYHSGN---ATFRERVGNEYERLGRSGHIVLIYVFAVLVIPFFGLLAQLLGFHVMLISQDLTTYDYIVQEQRKE 859
            MR NGF+ P  PLQ+LTW +  +I+ G+Y +++P L   L ++ G  Y +LA  + ++  I   IDP DP V   +R  Q    +GS                      S  +T  C+LC+  V   S+HCRXXXXXXXXXXXXXXXXXXX  + NY+YF+ ++  T+    LQL L+ +        +   + F     N +        I+ +  +A +++P  GL+ QL  FH+ML+ + LTTY+YI+ EQRKE
Sbjct:    1 MRVNGFDRPFHPLQVLTWFVFPLILFGYYGILMPLLENELLYSTGLIYSMLALFTFLSAWITSAIDPRDPRVDEAQRRQQQIMASGSCLSRCCEPLAMGPAFEYVAVDESDTETIVCYLCEARVESSSKHCRXXXXXXXXXXXXXXXXXXXIGQRNYAYFLCVICCTWLFATLQLALTVYVLIRLTVPSLRASLFVRNAQNHWCLPTMQAVIIALGAWAGILLPLVGLVGQLGAFHLMLLGEGLTTYEYIINEQRKE 257
[Close]
BLAST of mRNA_H-paniculata_contig2336.6299.1 vs. uniprot
Match: A0A6U4ETW1_9STRA (Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4ETW1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.930e-19
Identity = 72/231 (31.17%), Postives = 108/231 (46.75%), Query Frame = 2 
Query:  176 MRKNGFEAPLEPLQMLTWLLLLIIVGGFYALVIPALPTALAFAAGATYFVLASSSVMAGIIACHIDPIDPNVRRFHQGDSVAGSSQDKTFCFLCQLHVNKGSRHCRXXXXXXXXXXXXXXXXXXXXXRGNYSYFVALLLATFFMTGLQLGLSAWFAFLYHSGNATFRERVGNEYERLGRSGHIVLIYVFAV----LVIPFFGLLAQLLGFHVMLISQDLTTYDYIVQEQRK 856
            MR NG   P   LQ+ TW+LL ++VGGFY L++PAL T         Y +  + ++ A    C I+P+DP + +F         S + TFC L Q++V K SRHCR                       NY +F   + A      +  G++ +   LY +      ERV   +   G   HI + + F V    +++    L+ QL  FH+ LI   L+TY+YI+ EQR+
Sbjct:    6 MRVNGLHRPYSGLQVSTWVLLPVLVGGFYGLMVPALDTLERALCVTFYSLFLAVALGAAFKTCAINPVDPRLEKFLLTGVRDPGSAETTFCALDQINVCKTSRHCRFCNKCVLGFDHHCKWLNTCIGTRNYRFFFTTVTAVVGFVAVHFGVAVYLIALYATDRDDLEERVEGGF---GGGSHIDIYFAFLVAYTAVLLCVALLMLQLWTFHIYLIYLGLSTYEYIIHEQRR 233
[Close]
BLAST of mRNA_H-paniculata_contig2336.6299.1 vs. uniprot
Match: A0A6U4EWZ3_9STRA (Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EWZ3_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.720e-19
Identity = 72/231 (31.17%), Postives = 108/231 (46.75%), Query Frame = 2 
Query:  176 MRKNGFEAPLEPLQMLTWLLLLIIVGGFYALVIPALPTALAFAAGATYFVLASSSVMAGIIACHIDPIDPNVRRFHQGDSVAGSSQDKTFCFLCQLHVNKGSRHCRXXXXXXXXXXXXXXXXXXXXXRGNYSYFVALLLATFFMTGLQLGLSAWFAFLYHSGNATFRERVGNEYERLGRSGHIVLIYVFAV----LVIPFFGLLAQLLGFHVMLISQDLTTYDYIVQEQRK 856
            MR NG   P   LQ+ TW+LL ++VGGFY L++PAL T         Y +  + ++ A    C I+P+DP + +F         S + TFC L Q++V K SRHCR                       NY +F   + A      +  G++ +   LY +      ERV   +   G   HI + + F V    +++    L+ QL  FH+ LI   L+TY+YI+ EQR+
Sbjct:    6 MRVNGLHRPYSGLQVSTWVLLPVLVGGFYGLMVPALDTLERALCVTFYSLFLAVALGAAFKTCAINPVDPRLEKFLLTGVRDPGSAETTFCALDQINVCKTSRHCRFCNKCVLGFDHHCKWLNTCIGTRNYRFFFTTVTAVVGFVAVHFGVAVYLIALYATDRDDLEERVEGGF---GGGSHIDIYFAFLVAYTAVLLCVALLMLQLWTFHIYLIYLGLSTYEYIIHEQRR 233
[Close]
BLAST of mRNA_H-paniculata_contig2336.6299.1 vs. uniprot
Match: A0A7S0Z0R8_9CRYP (Palmitoyltransferase (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z0R8_9CRYP)

HSP 1 Score: 87.0 bits (214), Expect = 9.080e-15
Identity = 82/237 (34.60%), Postives = 125/237 (52.74%), Query Frame = 2 
Query:  179 RKNGFEAPLEPLQMLTWLLLLIIVGGFYALVIPALPTALAFAAG---ATYFVLASSSVMAGIIACHIDPIDPNVRRFHQGDSVAGSSQDKTFCFLCQLHVNKGSRHCRXXXXXXXXXXXXXXXXXXXXXRGNYSYFVALLLATFFMTGLQLGLSAWFAFLYHS--GNATFRERVGNEYERLGRSGHIVLIYVFAVLVIPFFGLLAQLLGFHVMLISQDLTTYDYIVQEQRKERERKE 874
            RKNGFEAP + LQ+L++ L   ++  FYAL++P   T    A G   A Y +L     +  +++  +DP+D  +    Q       + +  +C  C+  V+K S+HCR          XXXXXXXXXXX  NY  F A +     +TGLQL   AW A L      +  F  RV + +    R G +V + V  ++    F LL  L+GFH+ L ++ ++TYDYI++++ K+  +KE
Sbjct:   10 RKNGFEAPYDNLQILSYFLFGFMISSFYALLVPL--TEEMPARGVLIAMYSLLLLGLCVGAVVSSWLDPVDTTIYSSLQATPREVPTGELLYCCYCKCKVHKRSKHCRVCNKCVGHFDXXXXXXXXXXXGVNYRVFFATISVASCLTGLQL---AWNAVLLKRFLDDEDFHMRVPH-FSGQARQGMLVYLVVSMLVAAGVFTLLIHLVGFHIFLYTRGMSTYDYILKQRAKKAAKKE 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2336.6299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR53_ECTSI2.060e-10076.25Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YWP3_9STRA8.160e-5254.67Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2UYM7_9STRA4.790e-3949.57Palmitoyltransferase n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YC54_HETAK4.360e-3042.26Palmitoyltransferase n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U7W5_9STRA1.590e-2331.06Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3ZJ70_9STRA8.470e-2140.65Palmitoyltransferase n=3 Tax=Pelagomonas calceolat... [more]
A0A7S3K685_9STRA3.460e-2036.96Palmitoyltransferase n=1 Tax=Aureoumbra lagunensis... [more]
A0A6U4ETW1_9STRA1.930e-1931.17Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6U4EWZ3_9STRA2.720e-1931.17Palmitoyltransferase n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0Z0R8_9CRYP9.080e-1534.60Palmitoyltransferase (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2336contigH-paniculata_contig2336:4750..10290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.4
Seed ortholog evalue2.1e-85
Seed eggNOG ortholog2880.D7FR53
KEGG koko:K07964,ko:K16675,ko:K20027
KEGG ReactionR07811
KEGG Pathwayko00531,ko01100,ko04391,ko05205,map00531,map01100,map04391,map05205
KEGG ModuleM00078
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-09_003460.1
EC2.3.1.225,3.2.1.166
COG Functional cat.Z
CAZyGH79
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko04131
Exons7
Model size2034
Cds size840
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.0524647-UTR-H-paniculata_contig2336:4749..49241622929662.0524647-UTR-H-paniculata_contig2336:4749..4924Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2336 4750..4924 +
1691480956.3692303-UTR-H-paniculata_contig2336:4749..49241691480956.3692303-UTR-H-paniculata_contig2336:4749..4924Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2336 4750..4924 +
1622929662.1533751-UTR-H-paniculata_contig2336:9271..102901622929662.1533751-UTR-H-paniculata_contig2336:9271..10290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2336 9272..10290 +
1691480956.4635894-UTR-H-paniculata_contig2336:9271..102901691480956.4635894-UTR-H-paniculata_contig2336:9271..10290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2336 9272..10290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929662.0683665-CDS-H-paniculata_contig2336:4924..49381622929662.0683665-CDS-H-paniculata_contig2336:4924..4938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 4925..4938 +
1691480956.3882575-CDS-H-paniculata_contig2336:4924..49381691480956.3882575-CDS-H-paniculata_contig2336:4924..4938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 4925..4938 +
1622929662.079726-CDS-H-paniculata_contig2336:5355..55721622929662.079726-CDS-H-paniculata_contig2336:5355..5572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 5356..5572 +
1691480956.4049354-CDS-H-paniculata_contig2336:5355..55721691480956.4049354-CDS-H-paniculata_contig2336:5355..5572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 5356..5572 +
1622929662.0940046-CDS-H-paniculata_contig2336:5796..59271622929662.0940046-CDS-H-paniculata_contig2336:5796..5927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 5797..5927 +
1691480956.414485-CDS-H-paniculata_contig2336:5796..59271691480956.414485-CDS-H-paniculata_contig2336:5796..5927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 5797..5927 +
1622929662.105977-CDS-H-paniculata_contig2336:7653..76861622929662.105977-CDS-H-paniculata_contig2336:7653..7686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 7654..7686 +
1691480956.4237099-CDS-H-paniculata_contig2336:7653..76861691480956.4237099-CDS-H-paniculata_contig2336:7653..7686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 7654..7686 +
1622929662.1162238-CDS-H-paniculata_contig2336:8064..81771622929662.1162238-CDS-H-paniculata_contig2336:8064..8177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 8065..8177 +
1691480956.4335473-CDS-H-paniculata_contig2336:8064..81771691480956.4335473-CDS-H-paniculata_contig2336:8064..8177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 8065..8177 +
1622929662.1307118-CDS-H-paniculata_contig2336:8499..86221622929662.1307118-CDS-H-paniculata_contig2336:8499..8622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 8500..8622 +
1691480956.4428391-CDS-H-paniculata_contig2336:8499..86221691480956.4428391-CDS-H-paniculata_contig2336:8499..8622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 8500..8622 +
1622929662.1427116-CDS-H-paniculata_contig2336:9062..92711622929662.1427116-CDS-H-paniculata_contig2336:9062..9271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 9063..9271 +
1691480956.453318-CDS-H-paniculata_contig2336:9062..92711691480956.453318-CDS-H-paniculata_contig2336:9062..9271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2336 9063..9271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2336.6299.1prot_H-paniculata_contig2336.6299.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2336 4925..9271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2336.6299.1

>prot_H-paniculata_contig2336.6299.1 ID=prot_H-paniculata_contig2336.6299.1|Name=mRNA_H-paniculata_contig2336.6299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp
MRKNGFEAPLEPLQMLTWLLLLIIVGGFYALVIPALPTALAFAAGATYFV
LASSSVMAGIIACHIDPIDPNVRRFHQGDSVAGSSQDKTFCFLCQLHVNK
GSRHCRYCDKCVDRFDHHCKWLNNCVGRGNYSYFVALLLATFFMTGLQLG
LSAWFAFLYHSGNATFRERVGNEYERLGRSGHIVLIYVFAVLVIPFFGLL
AQLLGFHVMLISQDLTTYDYIVQEQRKERERKERRKKFDKVIVKCHKLLY
LGPFYALNGLPKVNDDRSNVEPRAPSSFL*
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mRNA from alignment at H-paniculata_contig2336:4750..10290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2336.6299.1 ID=mRNA_H-paniculata_contig2336.6299.1|Name=mRNA_H-paniculata_contig2336.6299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5541bp|location=Sequence derived from alignment at H-paniculata_contig2336:4750..10290+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTTAAATCGATATGGTCTAAATTTTGCCACAGCAGTCACACCAATAAC
TGAAGTAACAATCAACTCTGTTCTGGTACGGTCGGGCTGTTTCACCTCGT
ACAACTACTTAGTCTTGGGAGGGACCGCGACACCTCTCCGGCGCAACCTT
TTCCTCCGCTTCTGGATTGAGGAGCATGCGGAAAAATGGGTGAGAGGGTA
CTCTGCTGCTGGGAATCTATCTATACATTCTCGAAGGAGGTAAATGACAG
CCGATTTTCGCTCCGCTCTCGTGCCTAATTTCGCTCCAGTCTTCAGTCCC
TTCAAAATGGACGAGAGCACTCCGTGGTCCGCCATACAGAGAGTCCAGTA
TATTTTGGGCGCCAACCCCATGCTTACAACTATTCATGGTAATGGAATCG
AATCGAGAGGTAATTGGAGGTAGGTAACTCGTCTGTTTGTTTTCTTGCTT
GTTGGTTCCCCAACGTCATGTTTTTGCGGCCCAAAAAATGAATGCTGAAT
ATGCTCTCAACAAGAATTGAACAAGGAATTCCTCGTAACCAGAGAACAAA
ACTAGAAATCAGCATGCCGACTCGCTTGTACTGCCTGTAAAATCATCAAA
ATCCAGGTTTGAGGCTCCTCTGGAGCCGCTTCAGATGCTGACATGGCTGC
TGCTGCTCATCATCGTGGGAGGGTTCTACGCCTTAGTTATACCTGCCTTA
CCAACCGCCCTGGCCTTCGCAGCGGGTGCAACTTATTTTGTGTTGGCGTC
GTCATCGGTCATGGCAGGAATCATTGCCTGTCACATTGACCCGATAGACC
CCAACGTCCGGCGCTTTCATCAGGTGCGTTGAAAGTGTTCGAGCTCCTGG
CGCGGCTATGCAGATATGATAACACGATGCTGTTCTCGGCTGTCTCTTAT
ACACCCCATCGTTGTTTGCTTCTTGGACCTGATCGTATGGATTCTTGTCG
CATGTGTTGGCTACAGTAGTGTGATTCAAGCTCGTTTCGTTTTACCGCAC
ATCGTGCGGTGCCTGCTTGCCTGCTCTGTTCCCTACTGTTTTTTCAGGGT
GATTCAGTTGCTGGGTCGTCGCAGGACAAAACGTTTTGTTTTCTGTGCCA
GCTGCACGTTAACAAGGGAAGTCGTCATTGCCGCTATTGCGACAAGTGCG
TCGACAGATTTGATCATCATTGCAAGTGGTGAGACCGGTTTCAGGTTGCG
GGTGTACTGCTGTTACATGGCCGAATTGCAGTTATCGCGCACCCCCGAAA
ACAAAAACGCTGAAACCGTTGTTGAACAACTACTGCCAGTACCCGGTAAA
TACCGGATGTGTCGCCAGCAGTGCTGCAAGCGTCGATAGTAAAATACAAC
TCGACCGACTGCATACTCCACAGATTTTCATGCAAGCGAGACTGTTTGGC
AGCTTCATCGCGAGGTTTTGGGGTTGAAGTACACGAGTTCGAGTGCCGTT
CACGTCCCTATTTGCGAAGTTACTAAGACACTTCATTGTAGAAGAAGTGA
CCCCATATAAGATACCCCTTGTCTACTGACACCAATTTCAGCTTTTCTGA
ACGGTGCATGGCTCCTTAAAGAGAACCGACGCTCCGAATAGGGTACCTCG
GACATCAGGTGACCCTATATAAGGTACCTCCATAATCTTGAAGCAATTCA
AATCCCTCCTCAGATTGTTTCAGTAACGCTGTGTGCGGGGGGAGTAGCGT
GCACGGGAGGGCCGCGTGCATCGCCGCTGTAGACGGAGCTTTCAGGGTAT
CTTGGTTACTAAGCGGAGTGGGTAGCTGTTTTTTAGCTGTTTTGGGGTCG
GAATGTGGGAGCGACGAGCTCCGTTTTGGCAGGATGGTATAGCCTTTCTC
AGCGCATGCGGCCCGCGCCGACGAAAAGACCAACTCAAGGATATTATATA
CCCTTCAATAAAAATCACAGTGGTGTTGGACGGCCGTGGGCGTACTATTA
ATAGGGCAGGGGTCTGATTTGTTTTCGGGCAGGTTGATATCATGTGTACG
GTACTGCAGTAGAAGTGCAGTAGGCGATGACAAACTTTCACCTGCGGTAT
GCGGTGCTTGATTTTAACCTCGTTTTCAATCGATGTCGCTAGTACTACCC
TAAACACGCCAAAGCTCGCTAAATCATGTTGAACTTACATATGTGCCATA
TCCGCAAGGCACGTAACCCATGATAACATCAATCGGCGGTCACCGTCCCC
CCCCTGGGATTGGGGTAGTCCTCATGAATGGTATCCACCCTATACACGCT
GAGTTTTTCCACGGAGTGTGGTACCTCGTATGGAGACCGCATACTGTACA
CGAGTGTGGCGGCCATGTTAGTGGGTAACCGGAGGTCTTGATGTAGAGAT
GATGTTGCAGTTTTGTTTTTCTTTCCTTGATCTCAATTTTATCCAAAGCT
TACTCGTCAGGATCTTTGTCCCCGTTTCGCGTTGCTCCGAGTACTGCTGC
ACCAACACTGCTGAAAGTCTAAAGTTTGTCAATGAGACGGTACACTGTTA
GAGTTCTGTCGATACAGCGAGAAACTTGTCTCTGTGATACTCGAAAGTTT
TAAGCTTATGAATGGTCGTACCAAGGATGTGCAGACACCAAATGAAGGTA
GCCTTCCTTCGTACTTGAGCATGCCAGAGTGGAATGCGGTGGCATTATTT
ACATCGGTTTTTTCAAGTACAGTTGACAAGAGACGAACCCAGTACACTGA
ATCCTGCCGCAAACCTCATGAATCCTGCTCACGACCTGTGTGACCAGATA
TCTTGTTTTGCGTTTGGTCACCAAGCGCGGTCGGGGCGGTTATGCTAGGG
TCAGCTTCACAATCAACGTGTCTTATGTTCGAGGCTCACGTTTGTCAACC
AACGTTTGACTCTGCTGTCGGATTTTTTTCTCCGTTGTCACTTGCTATCT
GCAGGCTCAACAACTGTGTGGGGCGTGGCAATTACAGGTCAGTTTCAACC
GCTGAAACTTGTTGGGTGTCAAGAACCGTAACCTACTTCTGCCTTTTGGT
GCCTTGTGCACCATGGGTTGAAAATATGGGTATTGGTGTAAAATACTGCT
GTTTGGTCGGGAAGCCGTGTGCTTGTGTCTTGGCATGCCCTCGTCGTTCT
TTGGAAGCTGTACAGGGGCCTCGGACAAATAATGCTAGCACTGCCGTTGT
GCGACGCATTTTTTTTCATTGTTCTATAATCTGCATGTACTCCGACTGTC
TTACGCCCGAAATGAAAGTCGCTGTGTTTTGGCCTCTAAAACATATTCCA
GAGTTCGTTTCTCTCAGTATGGTATTGTTGACTTGAGCTGTGTGCCGATC
GTTCTCTACTGGCAGTTATTTTGTTGCGCTATTGTTGGCGACGTTCTTTA
TGACCGGTCTGCAGCTCGGCCTATCCGCGTGGTTCGCCTTTTTGTACCAC
TCGGGCAACGCCACATTTAGGGAAAGAGGTGAGAAAGAGATCTTGTCATT
TTTCGCGTCTTGGAACTAGTTGTCAAACAGGTTACACGTTGGATATATCC
CTCCTGCTGTCTTGGTGGGTGAAATGCTCGTCGTTTTATGTCGCAACCTG
CGCACGGTATCCAGGCCCTTCGTGCCAGCTAGCTGTCTTTAAATACGTTT
GCCTGGCGACTGTGACGGGAAAGGTGTGCTGTAGTTGCCGTTGGCGTGTT
TTCTCTTGCGATGCCCCATGCTTTGCGGCATTGCAAGCTGGAATGTGCAC
TGTTGTTGCCATCATTTTGTTTATTACCACCTCTCGCTCGTCCCGTACAG
TCGGAAACGAGTATGAGCGACTAGGAAGATCGGGCCACATCGTCCTCATC
TACGTATTTGCTGTGCTGGTTATTCCTTTCTTCGGTCTTCTGGCGCAACT
GCTGGGGTTCCACGTCATGCTTAGTGAGTCACTGTGGGTACTGATTTACA
TCAGTGATGTGTGGAGCTGGGGTGCGTTGTACATACTAGAAGGCACAACC
TGTACGAATATGACAGTTTGCGCGTTGCGCCTTATTACCGACGATTCATA
ACATGAACCATGTTCTTAGTTCGTTGCTATGAAACGAACAATCCATGCAC
GGACTAAAAATGTTTGTTGAACACACTCCAACTGTGTATTTCATGTCAGG
TAATGGCCCGCAGGCATAAACATGTTACAGCTGTTTCCTAGTGTGTGCTG
TAACGTGGTATCATGAGTGTCATCTGTGGCTTGCCCAAAATCACGTTGTT
GGTGCCCTCGAAACGTCCGCCACGTTGCCAAGTCGCTCGGCGGCAGTCCC
TTCGCTGGTTGCAGCACATAACACGGTGTCTCCTACCTCCACCTCCTGTT
CCCGTTCTCCCAGTCTCTCAGGATTTAACAACGTACGACTACATCGTACA
AGAGCAACGGAAAGAGAGGGAACGAAAAGAGCGAAGAAAAAAATTCGACA
AGGTGATCGTGAAATGTCATAAGTTACTATACCTTGGTCCTTTCTATGCC
TTGAACGGTCTCCCAAAAGTTAACGATGACCGTTCAAATGTCGAGCCACG
AGCCCCCTCGTCTTTCTTGTAGAATGTTTATTAGTTGGGAAAAATAAATT
ACGTGCCGCGTGCTATTTTGCAGGAACGCGGAGAAAGGCCCAGTGGTGAA
TGCTGCGGCAATCCGCGTACGACAGAGGTGGAGGGAAGTAGTGGATTACC
AGCTACTTTTGAGGGGAAGTCAGGGCCAATAGTAATACCATGACGGGATT
GAACGTTGCTCCCGTTGATGTTTGCTCTAGGCAGGTTGTGTGTTGTCATT
TGGGTGACTGACTTGGTTCAGAGTGAGTTCACCAAACTTGCGGTGTACGA
CTGTACTACTTTGCTTTCGAAGGGAGTACTGAAAAATCCTTTTTATAATG
TATTTCGTATGTGCATGGTTAGCCAGCGGTGAGCAGTCGGTACCGCATCT
GGCAGCACCTACTACTGTATTTGAGATTTTATTAATACCCCGCACACGGG
ATTCGTTGGTGTCGTAGAGAAGCTGTTTTTTTGGTACAGGTTTAACCGAG
AGACGAGCCAGGTTATGAGGAAAAGTTCTCGACGCTTAGTTATGTAACGT
GGACGGTCCATGCTAATTCGTGGTGTACAGTACATGTAGAGTGAACAATG
AATACGATGTGTGTGGTGCGCAGTGTCTTGTCTACGTGAGCCCTATGTAT
CTGGTTAAATACGGTCGGGGCATGTTCACTTCAGGGTGGGCAGCAATCAG
TGAGTGGTTGTCCGGGGGAATATTGCGAGTATACGTGTTCTTACTATTGT
AAACAGGAACGGTGCTTGATTGGTATATCTGCTCCGAGGGTACAGAGTGA
GAACAATGGCTTAAATCTCACTTGTCGCACCATAGTGCAGCGTAAAGTTA
GTAGAACTGTGATTGGTAGATGATAATCACGCTTTGGTCCATGTACGGAA
AATAGTGTCGACCTTACGAAGACTATAGTATCATGATGAAATTAAAAGAA
AGTACACACGCGATACATTAATATTTTTTACGTGATGTTCTTTTACACAG
AGAAAAATATGGCAAGAGATGTCATATTCTATAAAACGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2336:4750..10290+

>mRNA_H-paniculata_contig2336.6299.1 ID=mRNA_H-paniculata_contig2336.6299.1|Name=mRNA_H-paniculata_contig2336.6299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig2336:4750..10290+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGAAAAATGGATGCGGAAAAATGGGTTTGAGGCTCCTCTGGAGCCG
CTTCAGATGCTGACATGGCTGCTGCTGCTCATCATCGTGGGAGGGTTCTA
CGCCTTAGTTATACCTGCCTTACCAACCGCCCTGGCCTTCGCAGCGGGTG
CAACTTATTTTGTGTTGGCGTCGTCATCGGTCATGGCAGGAATCATTGCC
TGTCACATTGACCCGATAGACCCCAACGTCCGGCGCTTTCATCAGGTTTG
AGGCTCCTCTGGAGCCGCTTCAGATGCTGACATGGCTGCTGCTGCTCATC
ATCGTGGGAGGGTTCTACGCCTTAGTTATACCTGCCTTACCAACCGCCCT
GGCCTTCGCAGCGGGTGCAACTTATTTTGTGTTGGCGTCGTCATCGGTCA
TGGCAGGAATCATTGCCTGTCACATTGACCCGATAGACCCCAACGTCCGG
CGCTTTCATCAGGGTGATTCAGTTGCTGGGTCGTCGCAGGACAAAACGTT
TTGTTTTCTGTGCCAGCTGCACGTTAACAAGGGAAGTCGTCATTGCCGCT
ATTGCGACAAGTGCGTCGACAGATTTGATCATCATTGCAAGTGGGTGATT
CAGTTGCTGGGTCGTCGCAGGACAAAACGTTTTGTTTTCTGTGCCAGCTG
CACGTTAACAAGGGAAGTCGTCATTGCCGCTATTGCGACAAGTGCGTCGA
CAGATTTGATCATCATTGCAAGTGGCTCAACAACTGTGTGGGGCGTGGCA
ATTACAGGCTCAACAACTGTGTGGGGCGTGGCAATTACAGTTATTTTGTT
GCGCTATTGTTGGCGACGTTCTTTATGACCGGTCTGCAGCTCGGCCTATC
CGCGTGGTTCGCCTTTTTGTACCACTCGGGCAACGCCACATTTAGGGAAA
GAGTTATTTTGTTGCGCTATTGTTGGCGACGTTCTTTATGACCGGTCTGC
AGCTCGGCCTATCCGCGTGGTTCGCCTTTTTGTACCACTCGGGCAACGCC
ACATTTAGGGAAAGAGTCGGAAACGAGTATGAGCGACTAGGAAGATCGGG
CCACATCGTCCTCATCTACGTATTTGCTGTGCTGGTTATTCCTTTCTTCG
GTCTTCTGGCGCAACTGCTGGGGTTCCACGTCATGCTTATCGGAAACGAG
TATGAGCGACTAGGAAGATCGGGCCACATCGTCCTCATCTACGTATTTGC
TGTGCTGGTTATTCCTTTCTTCGGTCTTCTGGCGCAACTGCTGGGGTTCC
ACGTCATGCTTATCTCTCAGGATTTAACAACGTACGACTACATCGTACAA
GAGCAACGGAAAGAGAGGGAACGAAAAGAGCGAAGAAAAAAATTCGACAA
GGTGATCGTGAAATGTCATAAGTTACTATACCTTGGTCCTTTCTATGCCT
TGAACGGTCTCCCAAAAGTTAACGATGACCGTTCAAATGTCGAGCCACGA
GCCCCCTCGTCTTTCTTGTAGTCTCTCAGGATTTAACAACGTACGACTAC
ATCGTACAAGAGCAACGGAAAGAGAGGGAACGAAAAGAGCGAAGAAAAAA
ATTCGACAAGGTGATCGTGAAATGTCATAAGTTACTATACCTTGGTCCTT
TCTATGCCTTGAACGGTCTCCCAAAAGTTAACGATGACCGTTCAAATGTC
GAGCCACGAGCCCCCTCGTCTTTCTTGTAG
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