mRNA_H-paniculata_contig23359.6298.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23359.6298.1
Unique NamemRNA_H-paniculata_contig23359.6298.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 4.260e-47
Identity = 89/201 (44.28%), Postives = 124/201 (61.69%), Query Frame = 1
Query:    4 FTYLGCFVDAGSDRVLTGTSFKN-QAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGDAT-CNMSCTGDESETCGGRNAISVYEYTESPLGY---------------TGCFVDSNVDRVLTGNSLKN-EPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIH 552
            +++ GC+VD+  DRVL+G S  +  + +T   CA  CEGS YFG +F  ECFC  S + PD LG++  C M+C+GD SE CGG  AI VYEY++                     GCFVD + DRVL+G+S+ +    MT+  CA+FC G+ ++GTE+  ECF   +GD  D LG+++ C MTC+GD SE CGG NAI ++
Sbjct:  177 YSFAGCYVDS-PDRVLSGDSMMSVNSVMTTAYCADFCEGSDYFGVQFGYECFCSSSGDTPDELGESEDCEMACSGDSSEICGGSYAIQVYEYSDXXXXXXXXXXXXXXXXXYESVGCFVDDSSDRVLSGDSMLSINSVMTAAYCADFCEGSTYFGTEYAFECFCSSSGDSPDELGEASNCDMTCSGDSSETCGGFNAIQVY 376          
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: D8LNS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS1_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 4.850e-37
Identity = 72/188 (38.30%), Postives = 113/188 (60.11%), Query Frame = 1
Query:    4 FTYLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGDAT-CNMSCTGDESETCGGRNAISVYEY-TESP---LGYTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIH 552
            F+Y+GCF D   DR++   +    +++T ++C   C GS YF T++ +EC+CGP+  + ++ G++T C   C G+  ETCGG  A SVY Y T  P     Y GCF D   DR++   +L    +MT+E+C   C G+ ++ T++G+EC+ G  G D+++ G+ST CT  C G+  E CGG  A S++
Sbjct:  126 FSYVGCFQD-DQDRIME-LALTESSSMTTELCELTCAGSYYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVYAYSTVEPTPTFSYVGCFQDDQ-DRIME-LALTESSSMTTELCELTCAGSSYFSTQYGRECWCGPAGTDYEKHGESTECTYECPGNPDETCGGFYAASVY 309          
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: A0A0F4ZFK6_9PEZI (Uncharacterized protein n=1 Tax=Thielaviopsis punctulata TaxID=72032 RepID=A0A0F4ZFK6_9PEZI)

HSP 1 Score: 141 bits (356), Expect = 6.590e-36
Identity = 81/194 (41.75%), Postives = 116/194 (59.79%), Query Frame = 1
Query:    1 GFTYLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGDAT-CNMSCTGDESETCGGRNAISVY-------EYTESPLGYT--GCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIH 552
            G  YLGCF +A + RVL   +   QA +T ++C + C G  YFGTE+  EC+CG  +N+PD L DAT C+M C GD+ + CGG + ++VY       +   S  GY   GC+ DS   RVLTG+   +E  MT E+CA  C    ++G E+G +C+ G +  +   +   T+CTMTC G+ SE CGGS+ IS++
Sbjct:  164 GTPYLGCFQEAAT-RVLPNRALA-QANMTAEICLANCVGYLYFGTEYGNECWCG--NNKPDLLADATDCSMVCAGDDEQLCGGPDRLTVYGPQAIKQDTLPSIAGYAYQGCYSDSATARVLTGSFYYDE-AMTLEMCATDCSLYEYFGVEYGTQCYCGTSVSNTSAIMPPTSCTMTCGGNSSETCGGSDRISLY 352          
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: D7FH79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH79_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 6.020e-35
Identity = 75/185 (40.54%), Postives = 109/185 (58.92%), Query Frame = 1
Query:    7 TYLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGDATCNMSCTGDESETCGGRNAISVYEYTESPLGYTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIHYGV 561
            +YLGCF D    RV   T + + A +T  VC+ LC  S ++GT++S EC+CG + +  D  G+  C+M+C+GD S+TCGG  A+SVYE  +   GY GC+ D    R+     +     MTSE+C   CG   +YGT++  +C+ G N D +D  G +  C M C+GD SEICGG   +S++  V
Sbjct:   15 SYLGCFSDPADSRVFD-TQYSDSA-MTAAVCSVLCASSAFYGTQYSSECWCGDNVDY-DANGEGVCDMACSGDSSQTCGGFYAMSVYENPDDS-GYLGCYSDPADSRIF--ELVATSDDMTSEICLGNCGAYQYYGTQYSTQCWCGDNAD-YDANG-AGECDMACSGDASEICGGFYTMSVYENV 191          
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: C5G163_ARTOC (Uncharacterized protein n=1 Tax=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) TaxID=554155 RepID=C5G163_ARTOC)

HSP 1 Score: 137 bits (346), Expect = 2.710e-34
Identity = 73/193 (37.82%), Postives = 112/193 (58.03%), Query Frame = 1
Query:    4 FTYLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPS-SNEPDRLGDATCNMSCTGDESETCGGRNAISVYEY-----TESP----LGYTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIH 552
            +T+ GC+ D+   R LTG +F +   +T+  C+SLC+G  +FG E+  EC+CG S SN   +  ++ CN  C GD SETCG    + +Y+      T +P      Y+GCF DS   R L+ + + NE  MT E+CA FC G  ++GTE+  EC+ G N      L     C++ C+G++++ CGGSN I+++
Sbjct:  545 YTFDGCYTDSPESRTLTGAAFVD-GNMTVTACSSLCKGYQFFGLEYGIECYCGNSRSNATMQAPESECNQPCGGDNSETCGASYRVGIYKDNTWIPTTNPQIPGYDYSGCFNDSASARALSDSFVYNEK-MTVELCATFCNGTKYFGTEYFSECYCGANLSPESTLKAEADCSLFCSGNNTQYCGGSNRINLY 735          
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: A0A1Y2FN79_PROLT (WSC domain-domain-containing protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FN79_PROLT)

HSP 1 Score: 134 bits (338), Expect = 3.290e-34
Identity = 84/192 (43.75%), Postives = 109/192 (56.77%), Query Frame = 1
Query:   13 LGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGD---ATCNMSCTGDESETCGGRNAISVY-----EYTESPLGYTGCFVDSNVD-RVLTGNSLKNEPTMTSEVCAEFCGGAPF--YGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIHY 555
            LGC+ D  + R L G SF     ++I+ CA LC+G T +G E+S EC+CG       RLG    A CNM+C+G  +E CGG NA+SVY         + +   GCF D     RVL G +  ++  MT  VC+ FC    F  +GTEFG+ECF G           S+ CT +CAGD SEICGGSNAIS++Y
Sbjct:  146 LGCYEDQINYRSLNGASFS-APDMSIEKCAGLCQGFTNYGVEYSNECYCGNGL----RLGPTAAANCNMACSGSPNEICGGSNALSVYGAPVVASDVNNVTSIGCFTDFYPQSRVLDGANTASDE-MTEAVCSAFCAQRAFTLFGTEFGRECFCGNTLPTVS----SSGCTQSCAGDSSEICGGSNAISVYY 327          
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 6.220e-34
Identity = 68/194 (35.05%), Postives = 112/194 (57.73%), Query Frame = 1
Query:   13 LGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGDAT-CNMSCTGDESETCGGRNAISVYEYT-------------ESPLGYTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIH 552
            LGC+ D   DR++   +  + + +T ++C   C GSTYF T++ +EC+CG +  +    G++T C  +C+GD S+TCGG NA +VY Y              E P    GC+ D   DR++    L ++ +MT+E+C   C G+ ++ T++G+EC+ G  G D+   G+ST CT  C+GD  + CGG +A +++
Sbjct:  200 LGCYEDDPEDRIMDNLALSDSS-MTTELCELTCVGSTYFATQYRRECWCGSADADYALHGESTGCTYACSGDTSQTCGGFNAANVYLYPDDSTPSPTPSPIQEGPSPALGCYADDPEDRIMDDLVL-SDSSMTTELCELTCEGSTYFATQYGRECWCGSAGADYALHGESTDCTYACSGDTDQTCGGFDAANVY 391          
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: A0A6A6P5T9_9PEZI (Uncharacterized protein n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6P5T9_9PEZI)

HSP 1 Score: 136 bits (343), Expect = 8.240e-34
Identity = 71/201 (35.32%), Postives = 114/201 (56.72%), Query Frame = 1
Query:    1 GFTYLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPS-SNEPDRLGDATCNMSCTGDESETCGGRNAISVYEYT---ESPLG----------YTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIHYGV 561
            G+ Y GC+ D+   RVLT  S     ++T ++C+S C G+ YFG E++ EC+CG   +   +   ++ CNM+C+GD +  CGG N +++++ T   E P G          Y GC  DS   RVL   +L  +  +T E+CA+FC G+ ++GTE+G+EC+ G    +       T C+  CAGD+ ++CG  N +S++  V
Sbjct:  814 GWAYQGCYTDSVGARVLTSKS-TTSGSMTYEMCSSFCGGNVYFGVEYAGECYCGDRFTGSTEEADESDCNMACSGDANANCGGPNRLTLFKSTSNEEPPAGPANAEIPGYSYVGCKTDSVGARVLDAMTLF-DAQLTVEMCADFCDGSTYFGTEYGQECYCGDGFSNPTSDAPETDCSFACAGDEQQLCGAGNRLSLYEKV 1012          
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: T0KYV9_COLGC (WSC domain-containing protein n=3 Tax=Colletotrichum gloeosporioides species complex TaxID=2707338 RepID=T0KYV9_COLGC)

HSP 1 Score: 131 bits (330), Expect = 3.840e-33
Identity = 78/206 (37.86%), Postives = 113/206 (54.85%), Query Frame = 1
Query:   10 YLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCG---PSSNEPDRLGDATCNMSCTGDESETCGGRNAISVY---------------------EYTESPLGYTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPF--YGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISI 549
            Y+GCF D G+ RVL    F + + +T   CAS C G TYFGT++S+EC+CG   P+ + PD    A C+M+CTG  SETCGG   +SVY                       T S   Y GC+ D+   RVL+G ++K +  MT E+CA FC  + +  +G E+  EC+ G + D   +    T CTM C G+++E+CG  N +++
Sbjct:  111 YVGCFAD-GNTRVLPSKQFTSDS-MTAAACASNCAGYTYFGTQWSRECWCGNTLPTVSAPD----AECSMTCTGSSSETCGGSLRLSVYGPNANAAYNPGSTSNTGTTSFPTTVSNFAYQGCYTDNVPQRVLSG-AVKFDGAMTLEMCASFCSSSNYGVFGVEYSGECYCGNSLDTASKKVAETECTMKCKGNNAELCGDGNRLNV 309          
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Match: D7FTD7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 4.630e-33
Identity = 63/184 (34.24%), Postives = 108/184 (58.70%), Query Frame = 1
Query:   13 LGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKECFCGPSSNEPDRLGDAT-CNMSCTGDESETCGGRNAISVYEYTESPLG---YTGCFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVNGDDFDRLGDSTACTMTCAGDDSEICGGSNAISIH 552
            LGC+ D   DR++   +  + + +T ++C   C GSTYF T++ +EC+CG +  +    G++T C  +C GD  +TCGG +A +VY YT+       + GC+ D +  R++   +L +  +M+ E+C   C G  ++G ++G+ECF G +  D    G+S+AC   C GD  ++CGG  A+S++
Sbjct:  207 LGCYGDDREDRIMDDLALSDYS-MTTELCELTCLGSTYFATQYGRECWCGSADMDYALHGESTDCTYACAGDADQTCGGFDAANVYSYTDESTAISAFVGCYQDESGSRIME-LALTDSSSMSMEMCEAKCRGNTYFGLQYGRECFCGGSSTDLLEHGESSACNYECPGDSDQVCGGFYAMSVY 388          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23359.6298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC73_ECTSI4.260e-4744.28Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D8LNS1_ECTSI4.850e-3738.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0F4ZFK6_9PEZI6.590e-3641.75Uncharacterized protein n=1 Tax=Thielaviopsis punc... [more]
D7FH79_ECTSI6.020e-3540.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
C5G163_ARTOC2.710e-3437.82Uncharacterized protein n=1 Tax=Arthroderma otae (... [more]
A0A1Y2FN79_PROLT3.290e-3443.75WSC domain-domain-containing protein n=1 Tax=Proto... [more]
D8LEK9_ECTSI6.220e-3435.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6A6P5T9_9PEZI8.240e-3435.32Uncharacterized protein n=1 Tax=Lineolata rhizopho... [more]
T0KYV9_COLGC3.840e-3337.86WSC domain-containing protein n=3 Tax=Colletotrich... [more]
D7FTD7_ECTSI4.630e-3334.24WSC domain containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23359contigH-paniculata_contig23359:2287..3663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue1.6e-41
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size564
Cds size564
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23359.6298.1prot_H-paniculata_contig23359.6298.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23359 2287..3663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.969663-CDS-H-paniculata_contig23359:2286..23791622929661.969663-CDS-H-paniculata_contig23359:2286..2379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23359 2287..2379 +
1691480956.314613-CDS-H-paniculata_contig23359:2286..23791691480956.314613-CDS-H-paniculata_contig23359:2286..2379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23359 2287..2379 +
1622929661.991608-CDS-H-paniculata_contig23359:2663..29451622929661.991608-CDS-H-paniculata_contig23359:2663..2945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23359 2664..2945 +
1691480956.3464305-CDS-H-paniculata_contig23359:2663..29451691480956.3464305-CDS-H-paniculata_contig23359:2663..2945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23359 2664..2945 +
1622929662.0091984-CDS-H-paniculata_contig23359:3474..36631622929662.0091984-CDS-H-paniculata_contig23359:3474..3663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23359 3475..3663 +
1691480956.3584013-CDS-H-paniculata_contig23359:3474..36631691480956.3584013-CDS-H-paniculata_contig23359:3474..3663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23359 3475..3663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23359.6298.1

>prot_H-paniculata_contig23359.6298.1 ID=prot_H-paniculata_contig23359.6298.1|Name=mRNA_H-paniculata_contig23359.6298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
GFTYLGCFVDAGSDRVLTGTSFKNQAALTIDVCASLCEGSTYFGTEFSKE
CFCGPSSNEPDRLGDATCNMSCTGDESETCGGRNAISVYEYTESPLGYTG
CFVDSNVDRVLTGNSLKNEPTMTSEVCAEFCGGAPFYGTEFGKECFRGVN
GDDFDRLGDSTACTMTCAGDDSEICGGSNAISIHYGV*
back to top

mRNA from alignment at H-paniculata_contig23359:2287..3663+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23359.6298.1 ID=mRNA_H-paniculata_contig23359.6298.1|Name=mRNA_H-paniculata_contig23359.6298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1377bp|location=Sequence derived from alignment at H-paniculata_contig23359:2287..3663+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTTCACGTACTTAGGGTGCTTTGTGGACGCCGGCAGTGACCGCGTATT AACGGGGACTTCTTTCAAAAATCAGGCTGCGTTGACGATTGATGTGAGGG CACTATATCATATGCTCTGTTGGTGTTGTCTGTCGTTTGACTTCTGTCAC ACGCTATATATTTGCTGGGCGATGGACTTGCAGATTTGTTATTGAGATTC CAAAATTACTTCGCCGGTTGCTTCTTGCACAGGTCCAGTCAGAACTTCGC TAGTGCCGATCGATGAACGCGTTGATATTTTCCCCTGCTTCAGATTAGTA GAGGCCTCCCACCAAACCAAAGTTGATTATCCCTGCCCCGCTACCCGTTT GTCCCCCTCGATACTACTCTTCACCAGGTGTGCGCATCTCTCTGCGAGGG ATCAACGTACTTCGGCACTGAGTTCAGCAAGGAATGCTTCTGCGGACCGT CGTCGAACGAACCCGATCGCCTCGGCGACGCCACGTGCAACATGAGTTGC ACCGGTGATGAAAGCGAAACTTGTGGTGGCCGTAACGCGATCAGCGTGTA CGAGTATACTGAATCTCCCTTGGGGTACACGGGTTGCTTCGTGGACAGCA ACGTAGACCGTGTGCTCACTGGGAATTCCCTCAAGAACGAGCCGACCATG ACCTCGGAGGTGAGGTGGCGTAAAAAAAAGAAAATTACAAAACAGCATGT AGGTTAACTCGTTTGTCACTACCTATGCGCGATAGACGATGAAAAATGGT TATGATTACCGTTTGTTGTGAACGCTAATGACAGTACTTGTAGCCGCATC GCGTTTGATAAAGTCGTTCTCGTAAATTTGTTTGCTTGGTCTTGCGTCTC CCTGGGTCACGAACAAGCCGTTAATATGCGATTGCATTTTGATGTCAGCG TTTGTACACTGCAATGCAAAACTCTCGAGATCACAGACAAAGGTGTCTTT TCTGTCAACAGTTGACAGCAGGAGATTCGCGGTGGGGACACATATAAAAA TCGATAGAATATACTTCCTGTGCGGATGATTGCATGCGACGCTGCTATGC TTGAAACCCCCACGGCATAAAGTGCTATTTATTGATGAAAGCATACTCCG ATATGATGCTTGGCAGAGTACTGGTGTTCCCCGAAGTCCCTCTTCCCTCA TGTTGGTGCCTTCCTTCCTCGCTGCCGTAATTCTGCAGGTATGCGCTGAG TTCTGCGGGGGTGCTCCGTTCTACGGAACTGAGTTCGGAAAAGAGTGCTT CCGTGGGGTGAATGGCGACGATTTTGATCGTCTCGGCGACTCGACAGCCT GCACAATGACCTGCGCGGGGGATGACAGCGAGATCTGTGGCGGGAGCAAT GCCATTAGCATACACTATGGTGTATAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23359:2287..3663+

>mRNA_H-paniculata_contig23359.6298.1 ID=mRNA_H-paniculata_contig23359.6298.1|Name=mRNA_H-paniculata_contig23359.6298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig23359:2287..3663+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTTCACGTACTTAGGGTGCTTTGTGGACGCCGGCAGTGACCGCGTATT
AACGGGGACTTCTTTCAAAAATCAGGCTGCGTTGACGATTGATGGCTTCA
CGTACTTAGGGTGCTTTGTGGACGCCGGCAGTGACCGCGTATTAACGGGG
ACTTCTTTCAAAAATCAGGCTGCGTTGACGATTGATGTGTGCGCATCTCT
CTGCGAGGGATCAACGTACTTCGGCACTGAGTTCAGCAAGGAATGCTTCT
GCGGACCGTCGTCGAACGAACCCGATCGCCTCGGCGACGCCACGTGCAAC
ATGAGTTGCACCGGTGATGAAAGCGAAACTTGTGGTGGCCGTAACGCGAT
CAGCGTGTACGAGTATACTGAATCTCCCTTGGGGTACACGGGTTGCTTCG
TGGACAGCAACGTAGACCGTGTGCTCACTGGGAATTCCCTCAAGAACGAG
CCGACCATGACCTCGGAGGTGTGCGCATCTCTCTGCGAGGGATCAACGTA
CTTCGGCACTGAGTTCAGCAAGGAATGCTTCTGCGGACCGTCGTCGAACG
AACCCGATCGCCTCGGCGACGCCACGTGCAACATGAGTTGCACCGGTGAT
GAAAGCGAAACTTGTGGTGGCCGTAACGCGATCAGCGTGTACGAGTATAC
TGAATCTCCCTTGGGGTACACGGGTTGCTTCGTGGACAGCAACGTAGACC
GTGTGCTCACTGGGAATTCCCTCAAGAACGAGCCGACCATGACCTCGGAG
GTATGCGCTGAGTTCTGCGGGGGTGCTCCGTTCTACGGAACTGAGTTCGG
AAAAGAGTGCTTCCGTGGGGTGAATGGCGACGATTTTGATCGTCTCGGCG
ACTCGACAGCCTGCACAATGACCTGCGCGGGGGATGACAGCGAGATCTGT
GGCGGGAGCAATGCCATTAGCATACACTATGGTGTATAGGTATGCGCTGA
GTTCTGCGGGGGTGCTCCGTTCTACGGAACTGAGTTCGGAAAAGAGTGCT
TCCGTGGGGTGAATGGCGACGATTTTGATCGTCTCGGCGACTCGACAGCC
TGCACAATGACCTGCGCGGGGGATGACAGCGAGATCTGTGGCGGGAGCAA
TGCCATTAGCATACACTATGGTGTATAG
back to top