mRNA_H-paniculata_contig2335.6294.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2335.6294.1
Unique NamemRNA_H-paniculata_contig2335.6294.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2335.6294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2335contigH-paniculata_contig2335:12073..13665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEssential protein Yae1, N-terminal
Ec32 orthologEc-12_000140.1
Exons2
Model size1158
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2335.6294.1prot_H-paniculata_contig2335.6294.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2335 12344..13468 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.2907107-UTR-H-paniculata_contig2335:12072..123431622929661.2907107-UTR-H-paniculata_contig2335:12072..12343Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2335 12073..12343 +
1691480956.0463672-UTR-H-paniculata_contig2335:12072..123431691480956.0463672-UTR-H-paniculata_contig2335:12072..12343Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2335 12073..12343 +
1622929661.3397224-UTR-H-paniculata_contig2335:13468..136651622929661.3397224-UTR-H-paniculata_contig2335:13468..13665Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2335 13469..13665 +
1691480956.0876043-UTR-H-paniculata_contig2335:13468..136651691480956.0876043-UTR-H-paniculata_contig2335:13468..13665Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2335 13469..13665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.303147-CDS-H-paniculata_contig2335:12343..124591622929661.303147-CDS-H-paniculata_contig2335:12343..12459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2335 12344..12459 +
1691480956.0570505-CDS-H-paniculata_contig2335:12343..124591691480956.0570505-CDS-H-paniculata_contig2335:12343..12459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2335 12344..12459 +
1622929661.318866-CDS-H-paniculata_contig2335:12894..134681622929661.318866-CDS-H-paniculata_contig2335:12894..13468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2335 12895..13468 +
1691480956.0687816-CDS-H-paniculata_contig2335:12894..134681691480956.0687816-CDS-H-paniculata_contig2335:12894..13468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2335 12895..13468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2335.6294.1

>prot_H-paniculata_contig2335.6294.1 ID=prot_H-paniculata_contig2335.6294.1|Name=mRNA_H-paniculata_contig2335.6294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
MEEKKMEGINDDDGIDEFFGGDGGEEDDEPGGDDTLAARELAALTARLTT
LGYQDGVDDGVQEVVQQGFDEGYIEGAAAGWKVGILYGAVAATAAALAQA
SRSSAIRGGDRGGRGEGSQKEDEWNDGAVVVGHHSVNNTEVSVVRGADCG
DRQLTTEGTAAGAGDEEHALRASAEEGSGRNFELSDLADELRRSSLLGPD
APQLEKEFVFGRLRMAGSAGAAVAAAVGE*
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mRNA from alignment at H-paniculata_contig2335:12073..13665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2335.6294.1 ID=mRNA_H-paniculata_contig2335.6294.1|Name=mRNA_H-paniculata_contig2335.6294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1593bp|location=Sequence derived from alignment at H-paniculata_contig2335:12073..13665+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGCGCGAAGGTGGTCTTCTGAAGGATTTAGGAAAAACATTATCCCTT
TAAACAGTAGGTTGGATCTGTCAGGCTGTAATGATCAGTATCTCAGTTTC
GTGAAAGGTACCTGGTATTGATTATCCAATGCTGTGTATGTTTTTCTTAT
TTCGTGCGGATCTGCCCTCATGAGTCTAGTGTGATGAGGAAAACAAGCTA
AACATAGTATCGCTAACTTTGAGGTGCATGTTGTTGGAGCACATTGCTGT
GGGTGAGCTGTTTCATTGACGATGGAAGAGAAGAAAATGGAAGGCATTAA
CGATGATGATGGAATAGATGAGTTTTTTGGTGGTGATGGTGGGGAGGAGG
ATGACGAGCCTGGCGGCGACGATACCTTGGCTGCGAGGTGTGAACTGGGT
TCATGTAGCTGAATCTACTTTAAGGCCGCAGTTGCAACTTGGTAGCACGG
TTGTTATCCTTGAAGTCGTTCTTTGAAATCCACACGGTGTTGCCAAGACC
ATAATTCATGTACAGATGTCCATGCCTCTGACCAAGAGCACGATCAAGCT
GAAAAACTATGTTTGGCGACTACATAAGTAAATTATAACGGAGTACTTTG
TGAGCACAGTATAAAATAACAGCAGTGGGAGGGCCACACTGAACTAACTG
TGTGGAGCGATGATGTTCCCTTGATATGGTATGCGATTTCACATCTTGAC
CAGGTCAAACGTTGGCAAGGCACACCCTACCAACCGGCGAATTACCAGTC
ATAACTCCGTGCTTGTTCCTGATGAGTTGCTCTCATCTTCCCCCGTCCCC
AACTTATCTCCCGCCGCTCCAGGGAGCTGGCGGCTCTGACGGCACGGCTG
ACAACACTAGGCTATCAGGACGGCGTGGATGACGGTGTCCAAGAAGTGGT
GCAACAAGGTTTTGACGAGGGCTACATAGAGGGCGCCGCGGCGGGGTGGA
AGGTCGGCATACTTTATGGAGCCGTGGCCGCGACGGCGGCGGCACTCGCG
CAAGCCTCCCGTTCGTCGGCAATAAGGGGAGGCGATCGCGGCGGCAGGGG
AGAGGGTAGCCAAAAGGAAGATGAATGGAATGATGGGGCGGTAGTCGTGG
GGCACCACTCTGTAAACAACACGGAGGTCAGTGTTGTGCGCGGGGCAGAC
TGTGGCGACCGACAATTAACAACAGAGGGCACAGCAGCGGGAGCCGGTGA
CGAGGAGCACGCTCTACGAGCGAGTGCGGAAGAGGGCAGTGGGAGAAATT
TTGAGTTATCGGACTTGGCAGACGAGCTTAGGCGGTCAAGTCTTCTTGGA
CCGGACGCACCACAGTTGGAAAAGGAATTTGTGTTCGGAAGGCTGCGGAT
GGCGGGTTCGGCAGGAGCGGCTGTTGCCGCAGCCGTGGGCGAATAGTATC
TGTTTCGGGACGTTTTCTCTGATCTGGCTGCAGTGTTTTTTGCCAAGTGT
AGAACTATATAGAACACGACACAGTCAAAGTATCGTTATGCGCACAGACA
GTGCGAATCAGATGCCAAGCATGAGTGGGATGTTGTAATGTATGTTTTGT
GTAGCCCCCAAGTGATGCAACAACATTTGCGTGCAGTTCCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2335:12073..13665+

>mRNA_H-paniculata_contig2335.6294.1 ID=mRNA_H-paniculata_contig2335.6294.1|Name=mRNA_H-paniculata_contig2335.6294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig2335:12073..13665+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGAGAAGAAAATGGAAGGCATTAACGATGATGATGGAATAGATGA
GTTTTTTGGTGGTGATGGTGGGGAGGAGGATGACGAGCCTGGCGGCGACG
ATACCTTGGCTGCGAGATGGAAGAGAAGAAAATGGAAGGCATTAACGATG
ATGATGGAATAGATGAGTTTTTTGGTGGTGATGGTGGGGAGGAGGATGAC
GAGCCTGGCGGCGACGATACCTTGGCTGCGAGGGAGCTGGCGGCTCTGAC
GGCACGGCTGACAACACTAGGCTATCAGGACGGCGTGGATGACGGTGTCC
AAGAAGTGGTGCAACAAGGTTTTGACGAGGGCTACATAGAGGGCGCCGCG
GCGGGGTGGAAGGTCGGCATACTTTATGGAGCCGTGGCCGCGACGGCGGC
GGCACTCGCGCAAGCCTCCCGTTCGTCGGCAATAAGGGGAGGCGATCGCG
GCGGCAGGGGAGAGGGTAGCCAAAAGGAAGATGAATGGAATGATGGGGCG
GTAGTCGTGGGGCACCACTCTGTAAACAACACGGAGGTCAGTGTTGTGCG
CGGGGCAGACTGTGGCGACCGACAATTAACAACAGAGGGCACAGCAGCGG
GAGCCGGTGACGAGGAGCACGCTCTACGAGCGAGTGCGGAAGAGGGCAGT
GGGAGAAATTTTGAGTTATCGGACTTGGCAGACGAGCTTAGGCGGTCAAG
TCTTCTTGGACCGGACGCACCACAGTTGGAAAAGGAATTTGTGTTCGGAA
GGCTGCGGATGGCGGGTTCGGCAGGAGCGGCTGTTGCCGCAGCCGTGGGC
GAATAGGGAGCTGGCGGCTCTGACGGCACGGCTGACAACACTAGGCTATC
AGGACGGCGTGGATGACGGTGTCCAAGAAGTGGTGCAACAAGGTTTTGAC
GAGGGCTACATAGAGGGCGCCGCGGCGGGGTGGAAGGTCGGCATACTTTA
TGGAGCCGTGGCCGCGACGGCGGCGGCACTCGCGCAAGCCTCCCGTTCGT
CGGCAATAAGGGGAGGCGATCGCGGCGGCAGGGGAGAGGGTAGCCAAAAG
GAAGATGAATGGAATGATGGGGCGGTAGTCGTGGGGCACCACTCTGTAAA
CAACACGGAGGTCAGTGTTGTGCGCGGGGCAGACTGTGGCGACCGACAAT
TAACAACAGAGGGCACAGCAGCGGGAGCCGGTGACGAGGAGCACGCTCTA
CGAGCGAGTGCGGAAGAGGGCAGTGGGAGAAATTTTGAGTTATCGGACTT
GGCAGACGAGCTTAGGCGGTCAAGTCTTCTTGGACCGGACGCACCACAGT
TGGAAAAGGAATTTGTGTTCGGAAGGCTGCGGATGGCGGGTTCGGCAGGA
GCGGCTGTTGCCGCAGCCGTGGGCGAATAG
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