mRNA_H-paniculata_contig23343.6291.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23343.6291.1
Unique NamemRNA_H-paniculata_contig23343.6291.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23343.6291.1 vs. uniprot
Match: D7FYU7_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYU7_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 9.520e-46
Identity = 79/123 (64.23%), Postives = 97/123 (78.86%), Query Frame = 1
Query:    1 VALPFFQQYRQWKSFAEWKGFLRMRKWTKCRVVLEENLFTLHPWLRIGMRRLKELCHELSKHRTFKVESETQTLEKFCDAQAGQRAGLDVELQRFAADVHKTIMKSCEDTLFNFLYSAGFNIK 369
             ALPFF+QY QWKSFA     + +RK  KCR VLEE+LF+LHPWLRIG+RRLKELC+ELS HR FKV+  T TLE FC AQ+ QR  LD+ LQ+F+ +V + +MKSCEDTL+NFL+ AGFN+K
Sbjct:  255 AALPFFRQYSQWKSFAXXXXXVHIRKRAKCRAVLEEDLFSLHPWLRIGIRRLKELCYELSTHRAFKVDFGTHTLENFCKAQSTQRDHLDLVLQQFSVNVREAVMKSCEDTLYNFLHRAGFNVK 377          
BLAST of mRNA_H-paniculata_contig23343.6291.1 vs. uniprot
Match: UPI0015A952F1 (dynein heavy chain 6, axonemal n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015A952F1)

HSP 1 Score: 66.6 bits (161), Expect = 2.720e-10
Identity = 36/119 (30.25%), Postives = 64/119 (53.78%), Query Frame = 1
Query:    7 LPFFQQYRQWKSFAEWKGFLRMRKWTKCRVVLEENLFTLHPWLRIGMRRLKELCHELSKHRTFKVE-SETQTLEKFCDAQAGQRAGLDVELQRFAADVHKTIMKSCEDTLFNFLYSAGF 360
            +P F ++R+WK+F  W+  +R +  +KC+ +L+ NLF ++  LR  +  ++E+C+ +S     ++E   T TLE+F  AQ  Q   +   L+ F   V + +  +C   L      AGF
Sbjct:  275 IPLFARFRRWKAFRVWRTNVRTKSMSKCKQLLQRNLFVVNQSLRPALIDVREMCYRISDMGLCRIEVGHTYTLEEFRQAQYQQLQEVSARLKEFRELVKEVVRSACRTALLE----AGF 389          
BLAST of mRNA_H-paniculata_contig23343.6291.1 vs. uniprot
Match: A0A498N1D2_LABRO (Dynein heavy chain axonemal n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498N1D2_LABRO)

HSP 1 Score: 63.9 bits (154), Expect = 2.380e-9
Identity = 35/112 (31.25%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    1 VALPFFQQYRQWKSFAEWKGFLRMRKWTKCRVVLEENLFTLHPWLRIGMRRLKELCHELSKHRTFKVESE-TQTLEKFCDAQAGQRAGLDVELQRFAADVHKTIMKSCEDTL 333
            + +P F  +R+WK+F  W+  +  +K +KCR +L+ENLF L+  LR  +  +KE+C+ +S     ++E + T TL++F   Q  Q   +   L +F   V +    +C + L
Sbjct:  189 LRIPVFALFRKWKAFRVWRANVCYKKTSKCRRLLQENLFILNESLRPALIDIKEMCYHISDMPLCRIEKDHTYTLKEFQSTQYKQLEEVSSRLGKFRELVMEVARTACRNAL 300          
BLAST of mRNA_H-paniculata_contig23343.6291.1 vs. uniprot
Match: A0A498LHA7_LABRO (Dynein heavy chain axonemal n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498LHA7_LABRO)

HSP 1 Score: 63.9 bits (154), Expect = 2.380e-9
Identity = 35/112 (31.25%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    1 VALPFFQQYRQWKSFAEWKGFLRMRKWTKCRVVLEENLFTLHPWLRIGMRRLKELCHELSKHRTFKVESE-TQTLEKFCDAQAGQRAGLDVELQRFAADVHKTIMKSCEDTL 333
            + +P F  +R+WK+F  W+  +  +K +KCR +L+ENLF L+  LR  +  +KE+C+ +S     ++E + T TL++F   Q  Q   +   L +F   V +    +C + L
Sbjct:  290 LRIPVFALFRKWKAFRVWRANVCYKKTSKCRRLLQENLFILNESLRPALIDIKEMCYHISDMPLCRIEKDHTYTLKEFQSTQYKQLEEVSSRLGKFRELVMEVARTACRNAL 401          
BLAST of mRNA_H-paniculata_contig23343.6291.1 vs. uniprot
Match: F0WBY1_9STRA (Uncharacterized protein AlNc14C54G4168 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBY1_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.570e-6
Identity = 32/116 (27.59%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    1 VALPFFQQYRQWKSFAEWKGFLRMRKWTKCRVVLEENLFTLHPWLRIGMRRLKELCHELSKHRTFKVE-SETQTLEKFCDAQAGQRAGLDVELQRFAADVHKTIMKSCEDTLFNFL 345
            + +PFF+QY++WK+F  WK  +R  K    +  L   L T  P+L+  + +L++LC ++ +      E  +  TLE F   Q+  R  L  +L+ F+ +  +  +++C   +  F+
Sbjct:  220 LQIPFFKQYKKWKTFTVWKRMIRYCKIRSAKRALTTKLVTAMPFLQNPILQLRKLCLQIGELELIHFEPGKIYTLEAFEREQSIYRDDLIAKLRAFSEESLQICIQTCACVIDAFM 335          
BLAST of mRNA_H-paniculata_contig23343.6291.1 vs. uniprot
Match: A0A1Y1V6V7_9FUNG (Dynein heavy chain, cytoplasmic n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V6V7_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 2.610e-5
Identity = 33/123 (26.83%), Postives = 61/123 (49.59%), Query Frame = 1
Query:    1 VALPFFQQYRQWKSFAEWKGFLRMRKWTKCRVVLEENLFTLHPWLRIGMRRLKELCHELSKHRTF-KVESETQTLEKFCDAQAGQRAGLDVELQRFAADVHKTIMKSCEDTLFNFLYSAGFNI 366
            + +PFFQ+YR WK F +WK  +   K  + +  L + LF +HP LR  +  +++   E+S+ +   +++ +   L  F ++Q      + VE+ +      K+I +  ED     L   GF +
Sbjct:  114 LKIPFFQRYRLWKIFTQWKSHIFHVKIEQAKKRLSQKLFIVHPILRNALLEVRKKSVEISEKKLLVEIKEKNIELSHFINSQKKWLQKIQVEVMK---TWEKSIREIVEDASKRCLEEQGFEV 233          
BLAST of mRNA_H-paniculata_contig23343.6291.1 vs. uniprot
Match: A0A1Y3NLQ1_PIRSE (DHC_N2 domain-containing protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NLQ1_PIRSE)

HSP 1 Score: 52.0 bits (123), Expect = 3.480e-5
Identity = 33/123 (26.83%), Postives = 60/123 (48.78%), Query Frame = 1
Query:    1 VALPFFQQYRQWKSFAEWKGFLRMRKWTKCRVVLEENLFTLHPWLRIGMRRLKELCHELSKHRTF-KVESETQTLEKFCDAQAGQRAGLDVELQRFAADVHKTIMKSCEDTLFNFLYSAGFNI 366
            + +PFFQ+YR WK F +WK ++   K  + +  L + LF +HP LR  +  +++   E+S+ +   +++ +   L  F ++Q      + VE+ +      K I    ED     L   GF +
Sbjct:  563 LKIPFFQRYRLWKIFTQWKSYIFHVKIEQAKKRLSQKLFIVHPILRDALLEVRKEAVEISEKKLLVEIKEKNIELSHFINSQKKWLQKMQVEVMK---TWEKKIRVIVEDASKRCLEEQGFEV 682          
BLAST of mRNA_H-paniculata_contig23343.6291.1 vs. uniprot
Match: A0A126TKP3_MARVE (Axonemal inner arm dynein heavy chain 5 n=1 Tax=Marsilea vestita TaxID=59764 RepID=A0A126TKP3_MARVE)

HSP 1 Score: 50.8 bits (120), Expect = 9.020e-5
Identity = 30/108 (27.78%), Postives = 56/108 (51.85%), Query Frame = 1
Query:    1 VALPFFQQYRQWKSFAEWKGFLRMRKWTKCRVVLEENLFTLHPWLRIGMRRLKELCHELSKHRTFKVESET-QTLEKFCDAQAGQRAGLDVELQRFAADVHKTIMKSC 321
            + L  F+QY+QWKSFA W+ F+R +     +  L + LF+++P L+  +  + E+C  +S    F  +  T   +E F + Q  +R+ L  +L+  +      +  +C
Sbjct:  311 MKLRVFKQYKQWKSFAIWRRFVRRKLQGLSQKSLIKQLFSINPILQKVLLEICEMCLSMSMLHLFDYKQGTIYNIENFLELQEDKRSNLLEKLREVSEKAATNVKMAC 418          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23343.6291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FYU7_ECTSI9.520e-4664.23Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
UPI0015A952F12.720e-1030.25dynein heavy chain 6, axonemal n=1 Tax=Anguilla an... [more]
A0A498N1D2_LABRO2.380e-931.25Dynein heavy chain axonemal n=1 Tax=Labeo rohita T... [more]
A0A498LHA7_LABRO2.380e-931.25Dynein heavy chain axonemal n=1 Tax=Labeo rohita T... [more]
F0WBY1_9STRA7.570e-627.59Uncharacterized protein AlNc14C54G4168 n=1 Tax=Alb... [more]
A0A1Y1V6V7_9FUNG2.610e-526.83Dynein heavy chain, cytoplasmic n=1 Tax=Piromyces ... [more]
A0A1Y3NLQ1_PIRSE3.480e-526.83DHC_N2 domain-containing protein n=1 Tax=Piromyces... [more]
A0A126TKP3_MARVE9.020e-527.78Axonemal inner arm dynein heavy chain 5 n=1 Tax=Ma... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23343contigH-paniculata_contig23343:2660..3397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue1e-39
Seed eggNOG ortholog2880.D7FYU7
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons3
Model size372
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23343.6291.1prot_H-paniculata_contig23343.6291.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23343 2661..3397 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929661.2104383-CDS-H-paniculata_contig23343:2660..28131622929661.2104383-CDS-H-paniculata_contig23343:2660..2813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23343 2661..2813 -
1691480956.0206292-CDS-H-paniculata_contig23343:2660..28131691480956.0206292-CDS-H-paniculata_contig23343:2660..2813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23343 2661..2813 -
1622929661.2253585-CDS-H-paniculata_contig23343:2969..30431622929661.2253585-CDS-H-paniculata_contig23343:2969..3043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23343 2970..3043 -
1691480956.030642-CDS-H-paniculata_contig23343:2969..30431691480956.030642-CDS-H-paniculata_contig23343:2969..3043Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23343 2970..3043 -
1622929661.2392423-CDS-H-paniculata_contig23343:3255..33971622929661.2392423-CDS-H-paniculata_contig23343:3255..3397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23343 3256..3397 -
1691480956.0385208-CDS-H-paniculata_contig23343:3255..33971691480956.0385208-CDS-H-paniculata_contig23343:3255..3397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23343 3256..3397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23343.6291.1

>prot_H-paniculata_contig23343.6291.1 ID=prot_H-paniculata_contig23343.6291.1|Name=mRNA_H-paniculata_contig23343.6291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
VALPFFQQYRQWKSFAEWKGFLRMRKWTKCRVVLEENLFTLHPWLRIGMR
RLKELCHELSKHRTFKVESETQTLEKFCDAQAGQRAGLDVELQRFAADVH
KTIMKSCEDTLFNFLYSAGFNIK
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mRNA from alignment at H-paniculata_contig23343:2660..3397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23343.6291.1 ID=mRNA_H-paniculata_contig23343.6291.1|Name=mRNA_H-paniculata_contig23343.6291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=738bp|location=Sequence derived from alignment at H-paniculata_contig23343:2660..3397- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGCTCTACCCTTCTTCCAACAATATCGCCAATGGAAATCCTTCGCAGA GTGGAAAGGGTTTTTGCGGATGCGCAAGTGGACCAAGTGCCGCGTAGTTT TGGAGGAAAACCTGTTCACCCTTCATCCATGGCTAAGAATCGGTCAGTGC CAAATCTGCGCGTCATGTCCATCGCCAGGCCGTTGGGGCTAGGGACGTTC TCCTATGCAAGCGTGAAGTGAAGATGGCATTTGTCGCATCTGCGCAAACC CTTTCCATTTCATCTTTTGCGCGCAAGGGGTAAGGAGACCTGTCTTTGAT ATCGCTCTATATTACGCCCCGCTGGTGGTCCGTCCATATTTAATCCGAGA GCAGGCATGCGGCGATTGAAGGAACTGTGCCACGAACTCAGCAAGCACCG CACGTTCAAAGTGGAGTCTGAAACGCAGGTAACGCGCCGTCAACACGCGT TTCGATGGCAGAAGAATTACGACTAAGTTCAAGTATTCGGTAGCCGAAAC ATGGACATTACGTCCTTGCAAAAACTTGAACTTTTGTGTTATCACCGTTG ATGATCTTCCTCGTGTCGGTTATTTCTCGGTCAGACACTGGAGAAGTTCT GCGACGCCCAAGCTGGGCAGCGTGCTGGCCTCGATGTGGAGTTGCAGCGG TTCGCGGCCGATGTTCATAAAACTATTATGAAATCGTGTGAGGATACTCT TTTCAATTTCTTGTACAGTGCGGGCTTTAACATCAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig23343:2660..3397-

>mRNA_H-paniculata_contig23343.6291.1 ID=mRNA_H-paniculata_contig23343.6291.1|Name=mRNA_H-paniculata_contig23343.6291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig23343:2660..3397- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGCTCTACCCTTCTTCCAACAATATCGCCAATGGAAATCCTTCGCAGA
GTGGAAAGGGTTTTTGCGGATGCGCAAGTGGACCAAGTGCCGCGTAGTTT
TGGAGGAAAACCTGTTCACCCTTCATCCATGGCTAAGAATCGGTAGCTCT
ACCCTTCTTCCAACAATATCGCCAATGGAAATCCTTCGCAGAGTGGAAAG
GGTTTTTGCGGATGCGCAAGTGGACCAAGTGCCGCGTAGTTTTGGAGGAA
AACCTGTTCACCCTTCATCCATGGCTAAGAATCGGCATGCGGCGATTGAA
GGAACTGTGCCACGAACTCAGCAAGCACCGCACGTTCAAAGTGGAGTCTG
AAACGCAGGCATGCGGCGATTGAAGGAACTGTGCCACGAACTCAGCAAGC
ACCGCACGTTCAAAGTGGAGTCTGAAACGCAGACACTGGAGAAGTTCTGC
GACGCCCAAGCTGGGCAGCGTGCTGGCCTCGATGTGGAGTTGCAGCGGTT
CGCGGCCGATGTTCATAAAACTATTATGAAATCGTGTGAGGATACTCTTT
TCAATTTCTTGTACAGTGCGGGCTTTAACATCAAGACACTGGAGAAGTTC
TGCGACGCCCAAGCTGGGCAGCGTGCTGGCCTCGATGTGGAGTTGCAGCG
GTTCGCGGCCGATGTTCATAAAACTATTATGAAATCGTGTGAGGATACTC
TTTTCAATTTCTTGTACAGTGCGGGCTTTAACATCAAG
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