mRNA_H-paniculata_contig23319.6287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23319.6287.1
Unique NamemRNA_H-paniculata_contig23319.6287.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23319.6287.1 vs. uniprot
Match: D7FJH7_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH7_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.860e-16
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 3 
Query:   63 ALSLLEEMRSERMHMRRTGQKLWWVF*DCDDDKIAKRAWSLMEVEETRTALKRRARTNA 239
            ALSLLEEMRSE M++RRTG+KLWWVF  C D K+ +RAW LMEVE+TR  ++ RA  NA
Sbjct:  609 ALSLLEEMRSEGMNLRRTGEKLWWVFNTCRDKKVKERAWVLMEVEQTRERVRLRAERNA 667
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23319.6287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJH7_ECTSI5.860e-1666.10PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23319contigH-paniculata_contig23319:449..1839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size326
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23319.6287.1prot_H-paniculata_contig23319.6287.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23319 467..1729 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929660.6362884-UTR-H-paniculata_contig23319:448..4661622929660.6362884-UTR-H-paniculata_contig23319:448..466Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23319 449..466 +
1691480955.7403138-UTR-H-paniculata_contig23319:448..4661691480955.7403138-UTR-H-paniculata_contig23319:448..466Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23319 449..466 +
1622929660.7052734-UTR-H-paniculata_contig23319:1729..18391622929660.7052734-UTR-H-paniculata_contig23319:1729..1839Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23319 1730..1839 +
1691480955.7698095-UTR-H-paniculata_contig23319:1729..18391691480955.7698095-UTR-H-paniculata_contig23319:1729..1839Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23319 1730..1839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929660.6531956-CDS-H-paniculata_contig23319:466..4821622929660.6531956-CDS-H-paniculata_contig23319:466..482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23319 467..482 +
1691480955.7537377-CDS-H-paniculata_contig23319:466..4821691480955.7537377-CDS-H-paniculata_contig23319:466..482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23319 467..482 +
1622929660.6824403-CDS-H-paniculata_contig23319:1547..17291622929660.6824403-CDS-H-paniculata_contig23319:1547..1729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23319 1548..1729 +
1691480955.7618048-CDS-H-paniculata_contig23319:1547..17291691480955.7618048-CDS-H-paniculata_contig23319:1547..1729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23319 1548..1729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23319.6287.1

>prot_H-paniculata_contig23319.6287.1 ID=prot_H-paniculata_contig23319.6287.1|Name=mRNA_H-paniculata_contig23319.6287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MGRSAGVWPGWPIRARCLCSRKCVLNACTCAGQGRSCGGFFKTVTTTRLR
SERGVLWRWKKPGRP*
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mRNA from alignment at H-paniculata_contig23319:449..1839+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23319.6287.1 ID=mRNA_H-paniculata_contig23319.6287.1|Name=mRNA_H-paniculata_contig23319.6287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1391bp|location=Sequence derived from alignment at H-paniculata_contig23319:449..1839+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCACAAACTGGAGATCTATGGGCCGCAGTGCAGGCAAGACACTGGAGCA
TCATCACTACAACTTTAGAGCACAGTATCACTCAAAAAAACGCAGTGGTG
GTGATGATGGTGATGATGATGACGATCGATCCAGAGTTGTTTTTCCTGTT
CTTTACGCATGAGGGGTAAGTTGTTTCGAGCCCAGCGAAGAAGCAGAGAG
AGTGCCAAGTCGGATGAATCTACGATAGATACCACCCCCCATCCCCTCTT
CCCCCCCTGAGGGCATGAGGGAGTTCATGCAGTATACCCTGTGAAGTTGT
TGACATTGGTCGAAGAGTTCACACCCTAGAATATATCTGCTGAACTGGTA
GTTGTGACGTCCTCGAGCGAAAATATTTGTGACCCGTACTCCATTAGGAG
TGCATGAGTAAATATTACCCCAGGCGTATCACACACAAAGCGATATATTG
GCTGTTTGTGGCGCAACGCTCCTCATTCGTGCTCGTGAAGATCAAAGCCC
CGTGCGGTACCCGGGATATAGTCATGGCCGCCGAATGTGCAACACTTGGT
TATTCAGGATGCCCGAAACCCCATGGCAGGATCCGGTTTGCGAATTATAG
CAACACAAGGATGATGACTTGTGGCTAGTACAGTATCGCCCTTGCGAACC
GTAACCTGGCCGACGAGAGTTCGGCATCCGTTGTCCCGGCACTGTAGGAA
GTACGAGGTCAATGGTCGGAACTCTACGGCATGGGTTTTCCGTGCGTACC
CGCCCCCTCCCCTGTACTTGGTTGAATATACCTGTCTTTTCCGGGGATTG
GAGTGGATAAGCTTGATGTCTGTCTACTCGAGGTCGTTCTTGCACGATTT
TTCAGCCGGTGGCCTTGCTCCCTTGGTTGGTGTACGGGGGAGAAGGGGCG
TATACCGCCCTGCACTGCACTCTACAGGGGTTTGAAACATGATATTGCCC
GATTAGTTCATCTCCTCCAACCGAAGCCCCATGAGCTGTAGTAATCGTCT
TGAATGTTGCTCTTGTATTTTGCCCATTTCAGTTCGTCTCGCATCTTGTG
TGTGTTTTGATAGTACATGTATGTCTCATGGGTGCATGTGTAACAACAGG
TGTGTGGCCAGGCTGGCCAATACGGGCGCGTTGTCTCTGCTCGAGGAAAT
GCGTTCTGAACGCATGCACATGCGCCGGACAGGGCAGAAGCTGTGGTGGG
TTTTTTAAGACTGTGACGACGACAAGATTGCGAAGCGAGCGTGGAGTCTT
ATGGAGGTGGAAGAAACCCGGACGGCCTTGAAGCGCAGAGCCCGAACAAA
TGCTGCGATGAAGATTGAACTTGCGTCTTCTTCATTTGGTGGTGGTGGTG
ATGGTGTTGGTCGTGGTGGTGTTGGTGGTGATTATGATGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig23319:449..1839+

>mRNA_H-paniculata_contig23319.6287.1 ID=mRNA_H-paniculata_contig23319.6287.1|Name=mRNA_H-paniculata_contig23319.6287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig23319:449..1839+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCCGCAGTGCAGATGGGCCGCAGTGCAGGTGTGTGGCCAGGCTGGC
CAATACGGGCGCGTTGTCTCTGCTCGAGGAAATGCGTTCTGAACGCATGC
ACATGCGCCGGACAGGGCAGAAGCTGTGGTGGGTTTTTTAAGACTGTGAC
GACGACAAGATTGCGAAGCGAGCGTGGAGTCTTATGGAGGTGGAAGAAAC
CCGGACGGCCTTGAGTGTGTGGCCAGGCTGGCCAATACGGGCGCGTTGTC
TCTGCTCGAGGAAATGCGTTCTGAACGCATGCACATGCGCCGGACAGGGC
AGAAGCTGTGGTGGGTTTTTTAAGACTGTGACGACGACAAGATTGCGAAG
CGAGCGTGGAGTCTTATGGAGGTGGAAGAAACCCGGACGGCCTTGA
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