mRNA_H-paniculata_contig23315.6284.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23315.6284.1
Unique NamemRNA_H-paniculata_contig23315.6284.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23315.6284.1 vs. uniprot
Match: D7G1G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G4_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 8.450e-15
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 RWAATADSLAASRISFTASREANAAARRWQAAGRCARHWRRVTAARTMSRKLAQENCTHAALPSP 195
            RWAATAD+L+ASRIS TA RE N AARRW+AAGRCARHWRRV AAR M R+   +    +  P P
Sbjct:  603 RWAATADALSASRISSTAFREGNRAARRWEAAGRCARHWRRVAAARGMQRRARDQFPRTSVAPMP 667
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BLAST of mRNA_H-paniculata_contig23315.6284.1 vs. uniprot
Match: A0A6H5L2X6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2X6_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.010e-14
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 RWAATADSLAASRISFTASREANAAARRWQAAGRCARHWRRVTAARTMSRKLAQENCTHAALPSP 195
            RWAATAD+L+ASRIS  A RE N AARRW+AAGRCARHWRRV AAR M R+   +    +  P P
Sbjct:  688 RWAATADALSASRISSAAFREGNRAARRWEAAGRCARHWRRVAAARGMERRARDQLPRTSVAPMP 752
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23315.6284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1G4_ECTSI8.450e-1564.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2X6_9PHAE4.010e-1463.08Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23315contigH-paniculata_contig23315:777..971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_000920.1
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929660.5918226-CDS-H-paniculata_contig23315:776..9711622929660.5918226-CDS-H-paniculata_contig23315:776..971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23315 777..971 +
1691480955.7273085-CDS-H-paniculata_contig23315:776..9711691480955.7273085-CDS-H-paniculata_contig23315:776..971Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23315 777..971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23315.6284.1prot_H-paniculata_contig23315.6284.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23315 777..971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23315.6284.1

>prot_H-paniculata_contig23315.6284.1 ID=prot_H-paniculata_contig23315.6284.1|Name=mRNA_H-paniculata_contig23315.6284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
RWAATADSLAASRISFTASREANAAARRWQAAGRCARHWRRVTAARTMSR
KLAQENCTHAALPSP
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mRNA from alignment at H-paniculata_contig23315:777..971+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23315.6284.1 ID=mRNA_H-paniculata_contig23315.6284.1|Name=mRNA_H-paniculata_contig23315.6284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig23315:777..971+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGGCAGCAACTGCCGACTCCCTAGCCGCCTCCCGCATCTCCTTCAC
CGCGTCGCGGGAGGCCAACGCCGCCGCTCGACGCTGGCAGGCCGCCGGTC
GCTGCGCGCGACACTGGCGCCGCGTAACCGCGGCGCGCACAATGTCGCGC
AAACTCGCCCAAGAGAATTGCACCCATGCTGCGCTGCCGTCGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig23315:777..971+

>mRNA_H-paniculata_contig23315.6284.1 ID=mRNA_H-paniculata_contig23315.6284.1|Name=mRNA_H-paniculata_contig23315.6284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig23315:777..971+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGGCAGCAACTGCCGACTCCCTAGCCGCCTCCCGCATCTCCTTCAC
CGCGTCGCGGGAGGCCAACGCCGCCGCTCGACGCTGGCAGGCCGCCGGTC
GCTGCGCGCGACACTGGCGCCGCGTAACCGCGGCGCGCACAATGTCGCGC
AAACTCGCCCAAGAGAATTGCACCCATGCTGCGCTGCCGTCGCCGAGGTG
GGCAGCAACTGCCGACTCCCTAGCCGCCTCCCGCATCTCCTTCACCGCGT
CGCGGGAGGCCAACGCCGCCGCTCGACGCTGGCAGGCCGCCGGTCGCTGC
GCGCGACACTGGCGCCGCGTAACCGCGGCGCGCACAATGTCGCGCAAACT
CGCCCAAGAGAATTGCACCCATGCTGCGCTGCCGTCGCCG
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