mRNA_H-paniculata_contig23315.6286.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig23315.6286.1
Unique Name	mRNA_H-paniculata_contig23315.6286.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig23315.6286.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig23315.6286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig23315	contig	H-paniculata_contig23315:1674..3839 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	2168
Cds size	2166
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929660.5439453-CDS-H-paniculata_contig23315:1673..3839	1622929660.5439453-CDS-H-paniculata_contig23315:1673..3839	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig23315 1674..3839 +
1691480955.7169523-CDS-H-paniculata_contig23315:1673..3839	1691480955.7169523-CDS-H-paniculata_contig23315:1673..3839	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig23315 1674..3839 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig23315.6286.1	prot_H-paniculata_contig23315.6286.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig23315 1674..3839 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig23315:1674..3839+
coding sequence from alignment at H-paniculata_contig23315:1674..3839+

protein sequence of mRNA_H-paniculata_contig23315.6286.1

>prot_H-paniculata_contig23315.6286.1 ID=prot_H-paniculata_contig23315.6286.1|Name=mRNA_H-paniculata_contig23315.6286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=722bp
VSAGGHQTPETGAVVEPAPAPIGSSRWMGNRSVGAGAHVRGDLILGESYG
SGSSGMRWLESENDDGMKVTLPTRHRHDGASLLGAGATSAGAAVLDTTPI
PASRAAAAVYSQSIGDDVGSPQGSGSGRDGVQQRRRRPAPRRPLELLLDE
MPNHKRTFAGSGGPAAQNGLRAVTGEGDLGAVLANASRDGNRTNHPQLSA
WIVDEMNRLFGVRSAPASGIPSHAGVPAGPSQYSQQQQSFGHSTAAAGAS
AGFGFANAVALEGAAMQGGVVTQNTSTTAAAAAVIDVLRPSSRSSDLESI
PTEELGSSLREGVGAATVHDNLTAVSSHAHKYAGNRDGPPADSLAANGKF
SDLEGGGTTSRVEAVASPPPGDHSRSPVSTTAGPRVSERFATTTAATAVV
VAEENNIVLGKGTTKSLQRLGGSRTSVPPDLATSAGAADRGLGPPREAAV
DERLLRAIDDGQRANADRRSAETSTDDGSGRSLSKSGRGGGNVGIVGPLG
LHRRHAGGDSPVDTKAEVATEAGGGGGGCYNGKGIGREEFIGLAVTGQAR
REIDTDHPTNPGAVISAEYHDRCSRLGLVHTANRDSESTKRTTDQLNGGH
VHTVPAAKPPANNSTERSGILQNVENGSLLSSRQLPPPPPPPPATRLGQH
RPLPGSSAMLLRRKGSETIGDGEGLESVGCERSDALEEGAQGVVGSVVEE
LGRKKENAAGSLTGEHQSLEV*

mRNA from alignment at H-paniculata_contig23315:1674..3839+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig23315.6286.1 ID=mRNA_H-paniculata_contig23315.6286.1|Name=mRNA_H-paniculata_contig23315.6286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2166bp|location=Sequence derived from alignment at H-paniculata_contig23315:1674..3839+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAGCGCCGGTGGGCATCAGACACCGGAGACGGGAGCAGTGGTTGAACC
GGCGCCGGCGCCAATTGGAAGCTCGCGATGGATGGGTAATCGAAGCGTGG
GTGCAGGGGCGCACGTGCGTGGCGATTTGATATTGGGCGAGAGTTACGGA
AGTGGGAGTAGCGGAATGAGGTGGTTGGAGAGCGAGAACGACGACGGAAT
GAAAGTGACATTACCGACACGGCATAGACACGATGGTGCCAGTCTTTTAG
GTGCTGGTGCTACTAGTGCTGGTGCTGCTGTGCTCGATACAACGCCAATC
CCCGCCTCTCGTGCAGCAGCTGCTGTTTATTCTCAGTCCATCGGCGACGA
TGTGGGAAGTCCACAGGGAAGCGGCAGCGGCCGAGACGGCGTGCAGCAGC
GGCGGCGGCGACCGGCTCCGAGACGGCCCTTGGAACTCTTGCTCGACGAA
ATGCCGAACCATAAACGCACCTTCGCCGGCTCTGGTGGCCCTGCCGCCCA
AAACGGGTTAAGAGCAGTGACCGGTGAGGGCGACCTAGGTGCCGTGCTAG
CCAACGCCAGTCGCGATGGAAATCGAACGAACCATCCTCAGTTGTCGGCG
TGGATAGTGGACGAGATGAATCGCCTTTTTGGGGTGCGTAGCGCACCCGC
AAGTGGTATCCCTTCGCACGCGGGTGTTCCCGCCGGTCCTTCTCAGTATT
CTCAACAACAGCAGTCTTTTGGTCATTCAACGGCAGCGGCCGGTGCAAGT
GCCGGGTTCGGGTTTGCGAATGCTGTCGCTTTGGAAGGGGCAGCGATGCA
AGGTGGAGTGGTAACACAGAACACTAGCACTACTGCTGCTGCTGCTGCAG
TTATTGACGTTTTGCGACCGAGCTCTAGATCGTCGGACTTGGAAAGCATC
CCAACGGAGGAGTTGGGATCGTCGCTCAGAGAAGGCGTGGGTGCAGCAAC
CGTGCATGATAACCTTACCGCCGTGTCTTCCCATGCTCACAAATATGCAG
GAAATCGCGATGGACCACCCGCCGACAGTCTCGCGGCCAACGGAAAATTT
TCTGACCTCGAAGGTGGAGGGACAACCTCGCGGGTCGAAGCGGTCGCTTC
CCCGCCCCCTGGCGATCACAGTCGGTCTCCGGTCTCGACCACGGCCGGAC
CAAGGGTCTCGGAGCGATTCGCAACAACAACAGCAGCAACAGCAGTAGTA
GTAGCAGAGGAAAATAATATTGTGTTGGGGAAAGGCACTACGAAGAGTTT
ACAACGGCTCGGTGGAAGTCGTACCAGTGTGCCCCCGGACCTTGCGACTT
CCGCCGGAGCTGCTGACAGAGGGTTAGGCCCACCGCGGGAAGCGGCGGTG
GACGAAAGACTGTTAAGAGCGATCGATGATGGGCAGCGAGCGAACGCCGA
TAGGAGGTCGGCAGAGACAAGTACTGACGACGGCAGCGGACGAAGCCTGA
GTAAAAGTGGCCGGGGCGGCGGGAACGTAGGCATCGTGGGTCCACTCGGG
CTTCACCGCCGTCATGCCGGTGGTGACTCTCCTGTTGATACCAAAGCCGA
AGTTGCAACTGAAGCAGGCGGCGGTGGTGGCGGCTGCTATAACGGTAAAG
GAATCGGTAGGGAAGAGTTTATCGGGCTAGCCGTGACGGGACAAGCTCGA
CGAGAAATCGATACTGATCATCCTACAAACCCCGGCGCGGTCATATCTGC
GGAGTATCATGACCGTTGTTCTCGTTTAGGACTCGTCCACACCGCCAATC
GCGACAGTGAATCCACTAAAAGAACAACAGATCAACTCAACGGCGGCCAT
GTGCACACGGTGCCGGCAGCAAAACCCCCGGCCAACAACAGCACGGAACG
GTCCGGGATTTTACAGAATGTCGAGAATGGTTCGCTCTTGTCCTCACGCC
AACTGCCTCCGCCGCCGCCACCGCCGCCTGCTACAAGGTTAGGCCAACAC
CGGCCATTACCGGGGTCATCGGCGATGCTGTTGCGAAGGAAGGGCAGTGA
GACCATTGGAGATGGCGAGGGCCTCGAAAGCGTGGGCTGCGAAAGGAGCG
ATGCCTTGGAGGAGGGAGCGCAAGGAGTGGTCGGCTCTGTGGTTGAGGAG
TTGGGCCGGAAGAAAGAAAATGCGGCAGGCTCGTTGACCGGAGAGCATCA
ATCTCTTGAGGTGTGA

Coding sequence (CDS) from alignment at H-paniculata_contig23315:1674..3839+

>mRNA_H-paniculata_contig23315.6286.1 ID=mRNA_H-paniculata_contig23315.6286.1|Name=mRNA_H-paniculata_contig23315.6286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4332bp|location=Sequence derived from alignment at H-paniculata_contig23315:1674..3839+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAGCGCCGGTGGGCATCAGACACCGGAGACGGGAGCAGTGGTTGAACC
GGCGCCGGCGCCAATTGGAAGCTCGCGATGGATGGGTAATCGAAGCGTGG
GTGCAGGGGCGCACGTGCGTGGCGATTTGATATTGGGCGAGAGTTACGGA
AGTGGGAGTAGCGGAATGAGGTGGTTGGAGAGCGAGAACGACGACGGAAT
GAAAGTGACATTACCGACACGGCATAGACACGATGGTGCCAGTCTTTTAG
GTGCTGGTGCTACTAGTGCTGGTGCTGCTGTGCTCGATACAACGCCAATC
CCCGCCTCTCGTGCAGCAGCTGCTGTTTATTCTCAGTCCATCGGCGACGA
TGTGGGAAGTCCACAGGGAAGCGGCAGCGGCCGAGACGGCGTGCAGCAGC
GGCGGCGGCGACCGGCTCCGAGACGGCCCTTGGAACTCTTGCTCGACGAA
ATGCCGAACCATAAACGCACCTTCGCCGGCTCTGGTGGCCCTGCCGCCCA
AAACGGGTTAAGAGCAGTGACCGGTGAGGGCGACCTAGGTGCCGTGCTAG
CCAACGCCAGTCGCGATGGAAATCGAACGAACCATCCTCAGTTGTCGGCG
TGGATAGTGGACGAGATGAATCGCCTTTTTGGGGTGCGTAGCGCACCCGC
AAGTGGTATCCCTTCGCACGCGGGTGTTCCCGCCGGTCCTTCTCAGTATT
CTCAACAACAGCAGTCTTTTGGTCATTCAACGGCAGCGGCCGGTGCAAGT
GCCGGGTTCGGGTTTGCGAATGCTGTCGCTTTGGAAGGGGCAGCGATGCA
AGGTGGAGTGGTAACACAGAACACTAGCACTACTGCTGCTGCTGCTGCAG
TTATTGACGTTTTGCGACCGAGCTCTAGATCGTCGGACTTGGAAAGCATC
CCAACGGAGGAGTTGGGATCGTCGCTCAGAGAAGGCGTGGGTGCAGCAAC
CGTGCATGATAACCTTACCGCCGTGTCTTCCCATGCTCACAAATATGCAG
GAAATCGCGATGGACCACCCGCCGACAGTCTCGCGGCCAACGGAAAATTT
TCTGACCTCGAAGGTGGAGGGACAACCTCGCGGGTCGAAGCGGTCGCTTC
CCCGCCCCCTGGCGATCACAGTCGGTCTCCGGTCTCGACCACGGCCGGAC
CAAGGGTCTCGGAGCGATTCGCAACAACAACAGCAGCAACAGCAGTAGTA
GTAGCAGAGGAAAATAATATTGTGTTGGGGAAAGGCACTACGAAGAGTTT
ACAACGGCTCGGTGGAAGTCGTACCAGTGTGCCCCCGGACCTTGCGACTT
CCGCCGGAGCTGCTGACAGAGGGTTAGGCCCACCGCGGGAAGCGGCGGTG
GACGAAAGACTGTTAAGAGCGATCGATGATGGGCAGCGAGCGAACGCCGA
TAGGAGGTCGGCAGAGACAAGTACTGACGACGGCAGCGGACGAAGCCTGA
GTAAAAGTGGCCGGGGCGGCGGGAACGTAGGCATCGTGGGTCCACTCGGG
CTTCACCGCCGTCATGCCGGTGGTGACTCTCCTGTTGATACCAAAGCCGA
AGTTGCAACTGAAGCAGGCGGCGGTGGTGGCGGCTGCTATAACGGTAAAG
GAATCGGTAGGGAAGAGTTTATCGGGCTAGCCGTGACGGGACAAGCTCGA
CGAGAAATCGATACTGATCATCCTACAAACCCCGGCGCGGTCATATCTGC
GGAGTATCATGACCGTTGTTCTCGTTTAGGACTCGTCCACACCGCCAATC
GCGACAGTGAATCCACTAAAAGAACAACAGATCAACTCAACGGCGGCCAT
GTGCACACGGTGCCGGCAGCAAAACCCCCGGCCAACAACAGCACGGAACG
GTCCGGGATTTTACAGAATGTCGAGAATGGTTCGCTCTTGTCCTCACGCC
AACTGCCTCCGCCGCCGCCACCGCCGCCTGCTACAAGGTTAGGCCAACAC
CGGCCATTACCGGGGTCATCGGCGATGCTGTTGCGAAGGAAGGGCAGTGA
GACCATTGGAGATGGCGAGGGCCTCGAAAGCGTGGGCTGCGAAAGGAGCG
ATGCCTTGGAGGAGGGAGCGCAAGGAGTGGTCGGCTCTGTGGTTGAGGAG
TTGGGCCGGAAGAAAGAAAATGCGGCAGGCTCGTTGACCGGAGAGCATCA
ATCTCTTGAGGTGTGAGTGAGCGCCGGTGGGCATCAGACACCGGAGACGG
GAGCAGTGGTTGAACCGGCGCCGGCGCCAATTGGAAGCTCGCGATGGATG
GGTAATCGAAGCGTGGGTGCAGGGGCGCACGTGCGTGGCGATTTGATATT
GGGCGAGAGTTACGGAAGTGGGAGTAGCGGAATGAGGTGGTTGGAGAGCG
AGAACGACGACGGAATGAAAGTGACATTACCGACACGGCATAGACACGAT
GGTGCCAGTCTTTTAGGTGCTGGTGCTACTAGTGCTGGTGCTGCTGTGCT
CGATACAACGCCAATCCCCGCCTCTCGTGCAGCAGCTGCTGTTTATTCTC
AGTCCATCGGCGACGATGTGGGAAGTCCACAGGGAAGCGGCAGCGGCCGA
GACGGCGTGCAGCAGCGGCGGCGGCGACCGGCTCCGAGACGGCCCTTGGA
ACTCTTGCTCGACGAAATGCCGAACCATAAACGCACCTTCGCCGGCTCTG
GTGGCCCTGCCGCCCAAAACGGGTTAAGAGCAGTGACCGGTGAGGGCGAC
CTAGGTGCCGTGCTAGCCAACGCCAGTCGCGATGGAAATCGAACGAACCA
TCCTCAGTTGTCGGCGTGGATAGTGGACGAGATGAATCGCCTTTTTGGGG
TGCGTAGCGCACCCGCAAGTGGTATCCCTTCGCACGCGGGTGTTCCCGCC
GGTCCTTCTCAGTATTCTCAACAACAGCAGTCTTTTGGTCATTCAACGGC
AGCGGCCGGTGCAAGTGCCGGGTTCGGGTTTGCGAATGCTGTCGCTTTGG
AAGGGGCAGCGATGCAAGGTGGAGTGGTAACACAGAACACTAGCACTACT
GCTGCTGCTGCTGCAGTTATTGACGTTTTGCGACCGAGCTCTAGATCGTC
GGACTTGGAAAGCATCCCAACGGAGGAGTTGGGATCGTCGCTCAGAGAAG
GCGTGGGTGCAGCAACCGTGCATGATAACCTTACCGCCGTGTCTTCCCAT
GCTCACAAATATGCAGGAAATCGCGATGGACCACCCGCCGACAGTCTCGC
GGCCAACGGAAAATTTTCTGACCTCGAAGGTGGAGGGACAACCTCGCGGG
TCGAAGCGGTCGCTTCCCCGCCCCCTGGCGATCACAGTCGGTCTCCGGTC
TCGACCACGGCCGGACCAAGGGTCTCGGAGCGATTCGCAACAACAACAGC
AGCAACAGCAGTAGTAGTAGCAGAGGAAAATAATATTGTGTTGGGGAAAG
GCACTACGAAGAGTTTACAACGGCTCGGTGGAAGTCGTACCAGTGTGCCC
CCGGACCTTGCGACTTCCGCCGGAGCTGCTGACAGAGGGTTAGGCCCACC
GCGGGAAGCGGCGGTGGACGAAAGACTGTTAAGAGCGATCGATGATGGGC
AGCGAGCGAACGCCGATAGGAGGTCGGCAGAGACAAGTACTGACGACGGC
AGCGGACGAAGCCTGAGTAAAAGTGGCCGGGGCGGCGGGAACGTAGGCAT
CGTGGGTCCACTCGGGCTTCACCGCCGTCATGCCGGTGGTGACTCTCCTG
TTGATACCAAAGCCGAAGTTGCAACTGAAGCAGGCGGCGGTGGTGGCGGC
TGCTATAACGGTAAAGGAATCGGTAGGGAAGAGTTTATCGGGCTAGCCGT
GACGGGACAAGCTCGACGAGAAATCGATACTGATCATCCTACAAACCCCG
GCGCGGTCATATCTGCGGAGTATCATGACCGTTGTTCTCGTTTAGGACTC
GTCCACACCGCCAATCGCGACAGTGAATCCACTAAAAGAACAACAGATCA
ACTCAACGGCGGCCATGTGCACACGGTGCCGGCAGCAAAACCCCCGGCCA
ACAACAGCACGGAACGGTCCGGGATTTTACAGAATGTCGAGAATGGTTCG
CTCTTGTCCTCACGCCAACTGCCTCCGCCGCCGCCACCGCCGCCTGCTAC
AAGGTTAGGCCAACACCGGCCATTACCGGGGTCATCGGCGATGCTGTTGC
GAAGGAAGGGCAGTGAGACCATTGGAGATGGCGAGGGCCTCGAAAGCGTG
GGCTGCGAAAGGAGCGATGCCTTGGAGGAGGGAGCGCAAGGAGTGGTCGG
CTCTGTGGTTGAGGAGTTGGGCCGGAAGAAAGAAAATGCGGCAGGCTCGT
TGACCGGAGAGCATCAATCTCTTGAGGTGTGA