mRNA_H-paniculata_contig23310.6282.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig23310.6282.1 vs. uniprot
Match: D7FK62_ECTSI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK62_ECTSI) HSP 1 Score: 239 bits (609), Expect = 3.880e-76 Identity = 117/172 (68.02%), Postives = 130/172 (75.58%), Query Frame = 1
Query: 1 ALPNGTFGKSYSNFMHGNKFSPDSRSPVHFVDDPDLAYVMRRYREVHDLWHVLSGLPPTVEGELALKWFELVQTGLPVCALGAVFGPLALS-----------------------QGSREMLAKKYVPWALRAGRRVRKPLICVWYEKRWEQPLEAIRSELGMERAPLRRKEG 447
ALP+GT GKSYSNFM N FSPD RSPV +VDDPDLAYVMRRYREVHDLWH L+GLP TVEGELALKWFELVQTGLPVCAL AV GPLAL +GSRE+LA+ +VPWA+RAGRR R+PL+CVWYEKRWEQPLE +R +LG+E AP R K G
Sbjct: 170 ALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAVLGPLALPSKEPPAPTTTPSXXXSSGSGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQRGKGG 341
BLAST of mRNA_H-paniculata_contig23310.6282.1 vs. uniprot
Match: A0A6T5QVX1_HETAK (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QVX1_HETAK) HSP 1 Score: 188 bits (477), Expect = 3.460e-57 Identity = 89/143 (62.24%), Postives = 107/143 (74.83%), Query Frame = 1
Query: 1 ALPNGTFGKSYSNFMHGNKFSPDSRSPVHFVDDPDLAYVMRRYREVHDLWHVLSGLPPTVEGELALKWFELVQTGLPVCALGAVFGPLALSQGSREMLAKKYVPWALRAGRRVRKPLICVWYEKRWEQPLEAIRSELGMERAP 429
+LP GTFG +Y FM GN FSP+ R+PV FVDD +LAYV+ RYR+VHDLWH L GLPPTV GELALKW EL+QTGLPV AL A GPLAL+ R +L + Y+PWALRA +R PL+CV YE W +PL A+R+ LG+ AP
Sbjct: 112 SLPRGTFGHAYYTFMDGNGFSPEGRAPVRFVDDAELAYVLLRYRQVHDLWHALFGLPPTVGGELALKWLELLQTGLPVAALSAAAGPLALAPADRALLRRVYLPWALRAHGALRAPLMCVRYEALWGEPLAAVRARLGVLPAP 254
BLAST of mRNA_H-paniculata_contig23310.6282.1 vs. uniprot
Match: A0A835Z0M6_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M6_9STRA) HSP 1 Score: 184 bits (468), Expect = 4.270e-56 Identity = 88/142 (61.97%), Postives = 109/142 (76.76%), Query Frame = 1
Query: 4 LPNGTFGKSYSNFMHGNKFSPDSRSPVHFVDDPDLAYVMRRYREVHDLWHVLSGLPPTVEGELALKWFELVQTGLPVCALGAVFGPLALSQGSREMLAKKYVPWALRAGRRVRKPLICVWYEKRWEQPLEAIRSELGMERAP 429
LP+GTFGK+Y++FM N+F+PDSR PV FVDD DLAYVM RYR+VHDLWHVLSGLPP++EGE+ALKWFE+VQTGLPV A+ A+ G + + R L +K VPWA+RAGRR PL+ VWYE+ W+ L R +L E AP
Sbjct: 104 LPSGTFGKAYADFMAHNQFTPDSRLPVRFVDDADLAYVMARYRQVHDLWHVLSGLPPSLEGEIALKWFEMVQTGLPVAAISALVGAARVPREGRAALRQKLVPWAIRAGRRS-VPLMNVWYERYWDMYLSNFREKLKFEPAP 244
BLAST of mRNA_H-paniculata_contig23310.6282.1 vs. uniprot
Match: W7U2W9_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2W9_9STRA) HSP 1 Score: 180 bits (456), Expect = 1.770e-53 Identity = 82/142 (57.75%), Postives = 108/142 (76.06%), Query Frame = 1
Query: 4 LPNGTFGKSYSNFMHGNKFSPDSRSPVHFVDDPDLAYVMRRYREVHDLWHVLSGLPPTVEGELALKWFELVQTGLPVCALGAVFGPLALSQGSREMLAKKYVPWALRAGRRVRKPLICVWYEKRWEQPLEAIRSELGMERAP 429
LP GTFG+ Y+ F+ + +SPD R+ V FVDD +LA+VM+RYR+VHD WHVL GLPPTV GELALKWFE+VQT LP+ A V GPL+LS R++L ++Y+PWA+RA + R PL+CVWYE+ +E+PLE +R L + AP
Sbjct: 165 LPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQERKLLKEQYIPWAVRAAVKAR-PLMCVWYERSFEEPLELMRKRLQIVTAP 305
BLAST of mRNA_H-paniculata_contig23310.6282.1 vs. uniprot
Match: A0A6P7DUU8_SHEEP (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=6 Tax=Pecora TaxID=35500 RepID=A0A6P7DUU8_SHEEP) HSP 1 Score: 172 bits (435), Expect = 6.660e-51 Identity = 77/145 (53.10%), Postives = 108/145 (74.48%), Query Frame = 1
Query: 1 ALPNGTFGKSYSNFMHGNKFSPDSRSPVHFVDDPDLAYVMRRYREVHDLWHVLSGLPPTVEGELALKWFELVQTGLPVCALGAVFGPLALSQGSREMLAKKYVPWALRAGRRVRKPLICVWYEKRWEQPLEAIRSELGMERAPLR 435
+LP G+FG +Y +F+ NK SPD+R+P FVDD +LAYV++RYRE+HD+ H L G+P + GE+ +KWFE VQTGLP+C L A+FGP+ LS S ++L + +PWA+ GRR ++ V+YE+RWEQPL+A+R ELG+ PLR
Sbjct: 113 SLPEGSFGCAYLHFLDVNKVSPDTRAPTRFVDDEELAYVIQRYREIHDMLHTLLGMPTNILGEIVVKWFEAVQTGLPMCVLSALFGPIQLSAQSLQLLISELIPWAVENGRRA-PCVLSVYYERRWEQPLQALRQELGITEPPLR 256
BLAST of mRNA_H-paniculata_contig23310.6282.1 vs. uniprot
Match: A0A7L2S160_9PASS (COQ4 protein (Fragment) n=5 Tax=Neognathae TaxID=8825 RepID=A0A7L2S160_9PASS) HSP 1 Score: 168 bits (426), Expect = 8.080e-51 Identity = 76/138 (55.07%), Postives = 103/138 (74.64%), Query Frame = 1
Query: 4 LPNGTFGKSYSNFMHGNKFSPDSRSPVHFVDDPDLAYVMRRYREVHDLWHVLSGLPPTVEGELALKWFELVQTGLPVCALGAVFGPLALSQGSREMLAKKYVPWALRAGRRVRKPLICVWYEKRWEQPLEAIRSELGM 417
LPNG+ G+ Y F+ NK SPD+R P FVDD +LAYV++RYREVHDL H L G+P + GE+ +KWFE VQTGLP+C LGA FGP+ LS ++LA + VPWA+R+GR ++ V+YE+RWEQP+E++R E+G+
Sbjct: 23 LPNGSLGREYVRFLEDNKVSPDTRMPPKFVDDEELAYVIQRYREVHDLMHTLLGMPTNMLGEVVVKWFEAVQTGLPMCVLGAAFGPVRLSTRKLQVLATELVPWAIRSGRNA-SCILNVYYEQRWEQPVESLREEIGI 159
BLAST of mRNA_H-paniculata_contig23310.6282.1 vs. uniprot
Match: UPI0005299C87 (ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Chlamydotis macqueenii TaxID=187382 RepID=UPI0005299C87) HSP 1 Score: 169 bits (428), Expect = 1.050e-50 Identity = 76/138 (55.07%), Postives = 104/138 (75.36%), Query Frame = 1
Query: 4 LPNGTFGKSYSNFMHGNKFSPDSRSPVHFVDDPDLAYVMRRYREVHDLWHVLSGLPPTVEGELALKWFELVQTGLPVCALGAVFGPLALSQGSREMLAKKYVPWALRAGRRVRKPLICVWYEKRWEQPLEAIRSELGM 417
LP+GT G+ Y F+ NK SPD+R P FVDD +LAYV++RYREVHDL H L G+P + GE+ +KWFE VQTGLP+C LGAVFGP+ LS ++LA + +PWA+R+GR ++ V+YE+RWEQP+E++R E+G+
Sbjct: 50 LPDGTLGREYVRFLEDNKVSPDTRMPPKFVDDEELAYVIQRYREVHDLMHTLLGMPTNMLGEVVVKWFEAVQTGLPMCVLGAVFGPIRLSARKLQVLATELIPWAIRSGRNA-SFILNVYYEQRWEQPVESLREEIGI 186
BLAST of mRNA_H-paniculata_contig23310.6282.1 vs. uniprot
Match: UPI000A2B54DB (ubiquinone biosynthesis protein COQ4 homolog, mitochondrial isoform X2 n=2 Tax=Suidae TaxID=9821 RepID=UPI000A2B54DB) HSP 1 Score: 169 bits (429), Expect = 1.730e-50 Identity = 77/148 (52.03%), Postives = 108/148 (72.97%), Query Frame = 1
Query: 1 ALPNGTFGKSYSNFMHGNKFSPDSRSPVHFVDDPDLAYVMRRYREVHDLWHVLSGLPPTVEGELALKWFELVQTGLPVCALGAVFGPLALSQGSREMLAKKYVPWALRAGRRVRKPLICVWYEKRWEQPLEAIRSELGMERAPLRRKE 444
+LP G+FG Y F+ N+ SPD+R+P FVDD +LAYV++RYREVHD+ H L G+P + GE+ +KWFE VQTGLP+C L A+FGP+ LS S ++L + +PWA++ GRR L+ ++YE+RWEQPL A+R ELG+ P+R K+
Sbjct: 74 SLPEGSFGCEYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDMVHTLLGMPTNIPGEIVVKWFEAVQTGLPMCVLSALFGPIRLSAQSLQVLVSELIPWAVQNGRRA-PCLLHLYYERRWEQPLRALRQELGITEPPVRVKD 220
BLAST of mRNA_H-paniculata_contig23310.6282.1 vs. uniprot
Match: A0A091H8Y5_BUCRH (Uncharacterized protein (Fragment) n=2 Tax=Buceros rhinoceros silvestris TaxID=175836 RepID=A0A091H8Y5_BUCRH) HSP 1 Score: 168 bits (426), Expect = 2.180e-50 Identity = 74/138 (53.62%), Postives = 104/138 (75.36%), Query Frame = 1
Query: 4 LPNGTFGKSYSNFMHGNKFSPDSRSPVHFVDDPDLAYVMRRYREVHDLWHVLSGLPPTVEGELALKWFELVQTGLPVCALGAVFGPLALSQGSREMLAKKYVPWALRAGRRVRKPLICVWYEKRWEQPLEAIRSELGM 417
LP+GT G+ Y F+ NK SPD+R P F+DD +LAYV++RYRE+HDL H L G+P + GE+ +KWFE VQTGLP+C LGA+FGP+ LS ++LA + VPWA+R+GR ++ V+YE+RWEQP+E++R E+G+
Sbjct: 51 LPDGTLGREYVRFLEDNKVSPDTRMPTKFIDDEELAYVIQRYREIHDLMHTLLGMPTNMLGEVVVKWFEAVQTGLPMCVLGAMFGPVRLSTRKLQVLATELVPWAIRSGRNA-SCILNVYYEQRWEQPVESLREEIGI 187
BLAST of mRNA_H-paniculata_contig23310.6282.1 vs. uniprot
Match: A0A8B8D9A8_CRAVI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D9A8_CRAVI) HSP 1 Score: 171 bits (432), Expect = 3.400e-50 Identity = 79/144 (54.86%), Postives = 105/144 (72.92%), Query Frame = 1
Query: 1 ALPNGTFGKSYSNFMHGNKFSPDSRSPVHFVDDPDLAYVMRRYREVHDLWHVLSGLPPTVEGELALKWFELVQTGLPVCALGAVFGPLALSQGSREMLAKKYVPWALRAGRRVRKPLICVWYEKRWEQPLEAIRSELGMERAPL 432
+LP+GTFGK Y NF+ N FSPD+R P+HFVDDP+L YVM RYR+VHDL+H + G+PP + GE+A+KW E +QTGLP+CALGA+FGPL L + Y+PWA+R GR K L+ V++E+ WE LE +R EL +E P+
Sbjct: 136 SLPDGTFGKKYWNFLSKNGFSPDARLPIHFVDDPELKYVMLRYRQVHDLFHSVLGMPPHMLGEVAVKWVEALQTGLPMCALGALFGPLRLGPKHTKKYLDTYLPWAIRNGRNA-KFLMAVYWEEHWEDDLEKLRQELNIEPPPI 278 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23310.6282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23310.6282.1 >prot_H-paniculata_contig23310.6282.1 ID=prot_H-paniculata_contig23310.6282.1|Name=mRNA_H-paniculata_contig23310.6282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp ALPNGTFGKSYSNFMHGNKFSPDSRSPVHFVDDPDLAYVMRRYREVHDLWback to top mRNA from alignment at H-paniculata_contig23310:398..1644+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23310.6282.1 ID=mRNA_H-paniculata_contig23310.6282.1|Name=mRNA_H-paniculata_contig23310.6282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1247bp|location=Sequence derived from alignment at H-paniculata_contig23310:398..1644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23310:398..1644+ >mRNA_H-paniculata_contig23310.6282.1 ID=mRNA_H-paniculata_contig23310.6282.1|Name=mRNA_H-paniculata_contig23310.6282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig23310:398..1644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |