prot_H-paniculata_contig2331.6281.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2331.6281.1
Unique Nameprot_H-paniculata_contig2331.6281.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length616
Homology
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BLAST of mRNA_H-paniculata_contig2331.6281.1 vs. uniprot
Match: D8LDI5_ECTSI (MscS Mechanosensitive ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDI5_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.080e-24
Identity = 62/94 (65.96%), Postives = 77/94 (81.91%), Query Frame = 0 
Query:  416 LVLGALKGSTVVMESQRKRVRVESSKFEQQKEEWMDVEGEAEVDVDIMKELRDLKEKMAGPGDDYAKDTRAYNPDFAKDH-PEEEYETKIQEAM 508
            L +  ++ S   M +QRKRV+VES+KF+ +K+E+MDV+GEAE DVDIMKELRD+KEKMAGPGD YAKDTRAYNPDFA     EEEY+ KI+EA+
Sbjct:  155 LFVTGMRASLRSMSNQRKRVKVESAKFDAEKDEFMDVDGEAEFDVDIMKELRDMKEKMAGPGDSYAKDTRAYNPDFAAAAGDEEEYDKKIKEAL 248
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BLAST of mRNA_H-paniculata_contig2331.6281.1 vs. uniprot
Match: A0A6H5KGP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.030e-22
Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = 0 
Query:  416 LVLGALKGSTVVMESQRKRVRVESSKFEQQKEEWMDVEGEAEVDVDIMKELRDLKEKMAGPGDDYAKDTRAYNPDFAKDH-PEEEYETKIQEAM 508
            L +  ++ S   M +QRKRV+VES+KF+ +K+E+M+V+GEAE DVDIMKELRD+KEKMAGPGD YAKDTRAYNPDFA     EEEY+ KI+EA+
Sbjct:  322 LFVTGMRASLRSMSNQRKRVKVESAKFDAEKDEFMNVDGEAEFDVDIMKELRDMKEKMAGPGDKYAKDTRAYNPDFAAAAGDEEEYDKKIREAL 415
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BLAST of mRNA_H-paniculata_contig2331.6281.1 vs. uniprot
Match: A0A835YR84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR84_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.000e-12
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = 0 
Query:  406 SIVSGSVLIVLVLGALKGSTVVMESQRKRVRVESSKFEQQKEEWMDVEGEAEVDVDIMKELRDLKEKMAGPGDDYAKDTRAYNPDFAKDH 495
            +++ G  L  ++      S   M +QRKR+R E++KF+Q  EE M VEGE   + D+M+ELR +KE+  GPGD YAK+TR YNP+FA  H
Sbjct:   75 TLIGGGTLAYVMYRCSVISATDMNAQRKRIREENTKFQQNAEEHM-VEGEVAYNEDLMRELRRMKEENVGPGDKYAKETRRYNPEFAATH 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2331.6281.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDI5_ECTSI2.080e-2465.96MscS Mechanosensitive ion channel n=1 Tax=Ectocarp... [more]
A0A6H5KGP0_9PHAE1.030e-2264.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YR84_9STRA6.000e-1246.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 367..387
NoneNo IPR availableCOILSCoilCoilcoord: 497..531
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 428..615
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..403
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 404..427

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2331contigH-paniculata_contig2331:7550..17552 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2331.6281.1mRNA_H-paniculata_contig2331.6281.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2331 7352..18530 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2331.6281.1 ID=prot_H-paniculata_contig2331.6281.1|Name=mRNA_H-paniculata_contig2331.6281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=616bp
MREHYTCRPLAHITAGDRSRRLSPPTSLSKDNLLHTLTSLVSFSSYQKSL
SSHVHHTPVTGGEINMRLPHCIASLCLASNLKHSTAFIQPIPGSSTALQR
TRSSLATRAQQQHQQKTPFASTSLRHTATFPTPASVMSANPPSSSLSIGT
SGVDASSAALVVGIHNKPQPRLFSLGAAKNILSNRRRRGEGNPDGGVVGG
RVEKEEGRRVSSRGRRGWVRRTMAGVAAALVLRTSFAPASVSAIPLGGVT
GRRSVSSDRNKAREMEAERVARRNQLKQKQFEEDRAAQLAAETELEEALH
EPSETQSESELDTAAAAAEGMGDSGSLAHAGVGAAMSVGGEVAPGTRAML
GGEELQASGGEGKVQKRKQTKEERERYIEQLRKQLKDPTFNPNTVAVAPE
DHTFGSIVSGSVLIVLVLGALKGSTVVMESQRKRVRVESSKFEQQKEEWM
DVEGEAEVDVDIMKELRDLKEKMAGPGDDYAKDTRAYNPDFAKDHPEEEY
ETKIQEAMRQRERLAKKRNEAFMKKKQLETQDTDIEASEDGLSDDFLGQG
NGGDAESAEELASSRQDLDVDEGEVAKQAKKAADVKRLQDMFNNSPSEDG
DLPEDDLGDKRELLP*
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