mRNA_H-paniculata_contig23308.6280.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23308.6280.1
Unique NamemRNA_H-paniculata_contig23308.6280.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23308.6280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23308contigH-paniculata_contig23308:1900..3730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929660.070634-CDS-H-paniculata_contig23308:1900..20471622929660.070634-CDS-H-paniculata_contig23308:1900..2047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23308 1901..2047 -
1691480955.5243733-CDS-H-paniculata_contig23308:1900..20471691480955.5243733-CDS-H-paniculata_contig23308:1900..2047Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23308 1901..2047 -
1622929660.087177-CDS-H-paniculata_contig23308:3580..37301622929660.087177-CDS-H-paniculata_contig23308:3580..3730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23308 3581..3730 -
1691480955.5377374-CDS-H-paniculata_contig23308:3580..37301691480955.5377374-CDS-H-paniculata_contig23308:3580..3730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23308 3581..3730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23308.6280.1prot_H-paniculata_contig23308.6280.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23308 1901..3730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23308.6280.1

>prot_H-paniculata_contig23308.6280.1 ID=prot_H-paniculata_contig23308.6280.1|Name=mRNA_H-paniculata_contig23308.6280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
ALSDEGGSADGDYQEDSDFMEEDDEATLEEEDRKAGEAVSDMAGEGAANE
LDELQADGELPLADLLSRYGYVVDSAKDDGDDSDSNSGRGDTAVAGSGK
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mRNA from alignment at H-paniculata_contig23308:1900..3730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23308.6280.1 ID=mRNA_H-paniculata_contig23308.6280.1|Name=mRNA_H-paniculata_contig23308.6280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1831bp|location=Sequence derived from alignment at H-paniculata_contig23308:1900..3730- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCTTTCCGACGAAGGTGGTAGCGCTGATGGAGATTACCAGGAAGATTC
TGATTTCATGGAAGAGGACGACGAAGCCACCTTAGAAGAAGAGGATAGAA
AGGCTGGTGAAGCGGTCTCAGATATGGCTGGCGAAGGTGCTGCGAACGAG
GTGTGCTTTTGCTTTCACGTTTTCTTCGTTTGTGCTGAGCCCTGTAAATC
GCTCGGTCGAATAATGTAATGGTTGAAAGTTGCTTTGTTTTTTGGTTTAC
GCTTTTTTGGTGCCCCGACGCGAGCAGGGCTAGTGCTAGAACTAACCGTA
ATAGCAATCCTAACCCCCCACTCCTTGGGTATAGTGTGTATTGGCAGAGC
TCAAATTGGCGCCGGCGCCGATTTGAGCATAAACTGTTTTAGGGGCACAA
CTCATGACCGAGACGAGAACGTTTTTTGTTTTTTTTAAACCCCCGGAAGG
CTGAGGCAAAAACCTTTATCCGATGCTTCCATGCTTTAAGGATTTTACCA
AAGTATTTCTACATTTCCTTCAACAGAACAGAGTTATTTATTCCTCTGCG
GGGTAGGCGCCACCCTGGTTCGGCCGAACCAATCCGAACGTTTTGATAAC
TTTCTGGGTGTGCACTATTATGTTGAGTTAGTGTTAATCCACTATCGTGT
TCGGCCGAGTGGTGAAACATTACCTGCTTGTTCATATTTTTGAGATCAAC
CTTTTTAAAGCCTGAGGCTCTTGGTGTAGCAACAACAACAACAACAACAA
CAACAACAACAGCATTTGACAACAAATGTCGAAGGGTGCACGTACTTGAG
TCGTTGTGGTCAAGAATGACCGTGCCAACTGTTATGCCTGTCTGTATGTC
TGTATGAACTGGAATACATATTGTCTGTCAGAGCGGCGGCGACCGCTCCC
TTTCCCCTGTATTTTATGTCATGAAAACACAATGTTCTATTCCCTCCTGA
TTTTCGAGCTAGGGATAAAGATGGAGTGGAGATGGCGAACCGGCGCTATA
GGGGCTAATTTTAAGCCTGGGGAGGTGTCGATCAGACCCGTCGGTGTGGG
GGTGGTTGTGTAGGCCATATTGAGTATTGGTCGTCGTGATGTCGGAACTC
AAGTACCATTGTACACAGTGCACTGTGATTCTCCACCGACATTTTTGTCT
CTATTTGTTAACCCCTTGCGAGCGTTAGCGAGTATTCCTTTGCGCTTGAC
TAGTGATGTAGCTTGTCGTGTTAGTTGTGGTGCCATGGTTCAGTTTAGTC
TGTTGAGCTTTTTGTGTTGCACGGCGGCGGCGTGGTGGTGATCGTTACGT
TTGCCATATAATCCGCACGCCCCCGAATGTCCAACCTTGCGTTGTGAGAG
ATGCTGTCGGCGTGTGGTGGAAAACGTAAGAGGATTTTTCTATTGAAGTT
GTTCGGGACACATGTAAGCATACTATACTATACTACACCGCTCGCACCAA
GCCAAGTGGGAAACGTTTAGCGGGTTCGGCAGTCATGGGTCAAATTAACA
CGATAAAGACAGGGAAGCTCCCTTATTTGTTTGTCTATCGGTCGGTCGGC
CCATGATGAAGAGACGTACCAGTCGTGATGCACCCACCCTTCTTCCGTCA
TGTATTTTGCCAGTGGTATTGTCTGGACCCCCCCCGCCTCTCCCATCCCC
GTTTCCACTCCCTATCCACCCTATTCATTGCAGTTGGACGAGCTTCAGGC
TGACGGAGAGCTTCCGTTAGCAGATTTGCTCAGTCGATATGGCTACGTGG
TAGACAGCGCTAAGGATGACGGCGACGACAGCGATAGCAACAGCGGCCGT
GGCGATACTGCTGTTGCAGGGTCTGGGAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig23308:1900..3730-

>mRNA_H-paniculata_contig23308.6280.1 ID=mRNA_H-paniculata_contig23308.6280.1|Name=mRNA_H-paniculata_contig23308.6280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig23308:1900..3730- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCTTTCCGACGAAGGTGGTAGCGCTGATGGAGATTACCAGGAAGATTC
TGATTTCATGGAAGAGGACGACGAAGCCACCTTAGAAGAAGAGGATAGAA
AGGCTGGTGAAGCGGTCTCAGATATGGCTGGCGAAGGTGCTGCGAACGAG
GCTCTTTCCGACGAAGGTGGTAGCGCTGATGGAGATTACCAGGAAGATTC
TGATTTCATGGAAGAGGACGACGAAGCCACCTTAGAAGAAGAGGATAGAA
AGGCTGGTGAAGCGGTCTCAGATATGGCTGGCGAAGGTGCTGCGAACGAG
TTGGACGAGCTTCAGGCTGACGGAGAGCTTCCGTTAGCAGATTTGCTCAG
TCGATATGGCTACGTGGTAGACAGCGCTAAGGATGACGGCGACGACAGCG
ATAGCAACAGCGGCCGTGGCGATACTGCTGTTGCAGGGTCTGGGAAGTTG
GACGAGCTTCAGGCTGACGGAGAGCTTCCGTTAGCAGATTTGCTCAGTCG
ATATGGCTACGTGGTAGACAGCGCTAAGGATGACGGCGACGACAGCGATA
GCAACAGCGGCCGTGGCGATACTGCTGTTGCAGGGTCTGGGAAG
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