mRNA_H-paniculata_contig23305.6279.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23305.6279.1
Unique NamemRNA_H-paniculata_contig23305.6279.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23305.6279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23305contigH-paniculata_contig23305:1847..3133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23305.6279.1prot_H-paniculata_contig23305.6279.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23305 1847..3121 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929659.9966872-CDS-H-paniculata_contig23305:1846..19631622929659.9966872-CDS-H-paniculata_contig23305:1846..1963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23305 1847..1963 -
1691480955.4935937-CDS-H-paniculata_contig23305:1846..19631691480955.4935937-CDS-H-paniculata_contig23305:1846..1963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23305 1847..1963 -
1622929660.0113068-CDS-H-paniculata_contig23305:3010..31211622929660.0113068-CDS-H-paniculata_contig23305:3010..3121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23305 3011..3121 -
1691480955.505526-CDS-H-paniculata_contig23305:3010..31211691480955.505526-CDS-H-paniculata_contig23305:3010..3121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23305 3011..3121 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929660.028917-UTR-H-paniculata_contig23305:3121..31331622929660.028917-UTR-H-paniculata_contig23305:3121..3133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23305 3122..3133 -
1691480955.5146122-UTR-H-paniculata_contig23305:3121..31331691480955.5146122-UTR-H-paniculata_contig23305:3121..3133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23305 3122..3133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23305.6279.1

>prot_H-paniculata_contig23305.6279.1 ID=prot_H-paniculata_contig23305.6279.1|Name=mRNA_H-paniculata_contig23305.6279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MLLSGGPTVLQLAAKSGNNELCERLVKALRKELGPEQVKHMLVSQGARLL
RLATESDNLGRWMSVFTALRDDLSPE
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mRNA from alignment at H-paniculata_contig23305:1847..3133-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23305.6279.1 ID=mRNA_H-paniculata_contig23305.6279.1|Name=mRNA_H-paniculata_contig23305.6279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1287bp|location=Sequence derived from alignment at H-paniculata_contig23305:1847..3133- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGAAGAAGATGCTTCTTTCGGGAGGCCCTACCGTGCTTCAACTAGC
CGCGAAAAGTGGGAACAACGAACTGTGCGAGCGCCTGGTAAAAGCCCTGC
GCAAGGAGCTTGGTCCCGAACAGGTGCAGATTATCTCCGGACAATGTTAT
TGATTTCACAGCGGAGTTGGACCAGCTGTTTCCTCCACCTCTGCATCTAT
TCACATATTCCTCCGTCTCATAAGTCTGGTGGATAAGGGTTTTATAGTCA
TAACGTTTGCGGATCTGATATACGCTCACAGCCAGGCATACCATTCGAAT
GCTCTAGATTTCCGCTAATTTCTAGATGCCTCCAAAATATTCTGTCAACA
AGAATCAGTTGAGACTGTGTCTCGTGAGCATAGTTGGTGCGTTTGGGGTT
TGGCAAATTTTGCGAAAACGGACAAAATCGGCCACAGTACGTCGAATGGA
ACTCTTGCGGCGATAAAATTGCAACAAGACCTCCTTCCATGAAGAAACGG
ATTGTTGCGTTGGAGTTCTTGAAAAAATTAGACTAAGTCAATTCCTATTG
CACTGTATATAGCATCATCAGTGTCATACTATCAATTGAATGCTCCACCG
TGATGTCGGGAGGATAGCAATGAGAGATTGATGAAGAGTAGGGATATAAT
GATGATTGTTTGACGCTCAAACTTTATCGAGGAATCCAACGCAATAGTCC
GTTTCTTCATTAAGCCTTTTCTCCACAGTGATTGAACACTGCGTTTTATG
AGACAGGTGTTTTTTTTCGTATGGCACAAAACTTTGAGTTATGACGCATT
TATGACAATCAAAGGGGAAATCATGAAGCTCTCATGACACTATTTTAATG
CTGAGTTATGCACAATTCTAGTCAGAACTGCGACCTCGACAACGTTCTGC
CCCAGCACGAATCTCTATATAGTGTCCTGTACGGTACATCGCTCCTAATA
CAGACAAGGCAGGGCGACTGTTTGATGCAATAATGTGACAAATCATTTAG
ACTGGAGAGCGCCATGTATGGTGTTCTCCTAGACGCTTGTTTCAGGCTGT
GTTGAGATGATTTGGTGCTGAAAGCGTGGAAACGGCACTTTCACTTGTAG
TACGCCCGCGCAGCCCAAGTGTAAATGGCGGTGCTCTGGACTCACCATCT
GCTGCATGCGTTGCTCGTAGGTGAAGCATATGCTTGTCTCGCAGGGTGCA
AGATTGCTGCGACTGGCCACGGAAAGCGATAATCTCGGGCGTTGGATGAG
TGTGTTCACAGCCTTGCGTGATGATTTGAGTCCCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig23305:1847..3133-

>mRNA_H-paniculata_contig23305.6279.1 ID=mRNA_H-paniculata_contig23305.6279.1|Name=mRNA_H-paniculata_contig23305.6279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig23305:1847..3133- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCTTTCGGGAGGCCCTACCGTGCTTCAACTAGCCGCGAAAAGTGG
GAACAACGAACTGTGCGAGCGCCTGGTAAAAGCCCTGCGCAAGGAGCTTG
GTCCCGAACAGATGCTTCTTTCGGGAGGCCCTACCGTGCTTCAACTAGCC
GCGAAAAGTGGGAACAACGAACTGTGCGAGCGCCTGGTAAAAGCCCTGCG
CAAGGAGCTTGGTCCCGAACAGGTGAAGCATATGCTTGTCTCGCAGGGTG
CAAGATTGCTGCGACTGGCCACGGAAAGCGATAATCTCGGGCGTTGGATG
AGTGTGTTCACAGCCTTGCGTGATGATTTGAGTCCCGAAGTGAAGCATAT
GCTTGTCTCGCAGGGTGCAAGATTGCTGCGACTGGCCACGGAAAGCGATA
ATCTCGGGCGTTGGATGAGTGTGTTCACAGCCTTGCGTGATGATTTGAGT
CCCGAA
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