mRNA_H-paniculata_contig2329.6273.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2329.6273.1
Unique NamemRNA_H-paniculata_contig2329.6273.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2329.6273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2329contigH-paniculata_contig2329:12288..16284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size674
Cds size582
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2329.6273.1prot_H-paniculata_contig2329.6273.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2329 12379..16284 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929658.8174164-UTR-H-paniculata_contig2329:12287..123781622929658.8174164-UTR-H-paniculata_contig2329:12287..12378Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2329 12288..12378 +
1691480954.9063983-UTR-H-paniculata_contig2329:12287..123781691480954.9063983-UTR-H-paniculata_contig2329:12287..12378Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2329 12288..12378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929658.8333375-CDS-H-paniculata_contig2329:12378..125291622929658.8333375-CDS-H-paniculata_contig2329:12378..12529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2329 12379..12529 +
1691480954.9174051-CDS-H-paniculata_contig2329:12378..125291691480954.9174051-CDS-H-paniculata_contig2329:12378..12529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2329 12379..12529 +
1622929658.8562143-CDS-H-paniculata_contig2329:15853..162841622929658.8562143-CDS-H-paniculata_contig2329:15853..16284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2329 15854..16284 +
1691480954.9274049-CDS-H-paniculata_contig2329:15853..162841691480954.9274049-CDS-H-paniculata_contig2329:15853..16284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2329 15854..16284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2329.6273.1

>prot_H-paniculata_contig2329.6273.1 ID=prot_H-paniculata_contig2329.6273.1|Name=mRNA_H-paniculata_contig2329.6273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
MTMNAKRDIMLGRPLLLVLLSLSLLASAQGGGASTWGWRTRFNYDAAPQV
GAAAAAGRARLDRRWQRLMPTAIPSAMSAASTRRLVSLRGGSGAPRQPPL
ASSAPTTCRNGVSENKREDAEGLETSVDNNGDNDKEKEEERTESTQNGLC
LTRLDGADDGCGGDTLRATVGRLLSPVAVEKGAGRQGTREGRVV
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mRNA from alignment at H-paniculata_contig2329:12288..16284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2329.6273.1 ID=mRNA_H-paniculata_contig2329.6273.1|Name=mRNA_H-paniculata_contig2329.6273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3997bp|location=Sequence derived from alignment at H-paniculata_contig2329:12288..16284+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTCCTTGCACTCCATTGTGGTAGTGTTGAGCACCAGAGATACGGCAGG
CAGAAGCAACTTCTGTCTGTGTGGATATACAGGTCTTGGGCATGACGATG
AATGCAAAGCGAGACATAATGTTGGGACGTCCTTTGCTTCTCGTTTTGCT
GTCGCTGTCGCTTTTGGCAAGCGCTCAAGGCGGCGGCGCTAGCACATGGG
GATGGCGGACCAGATTCAATTATGATGCAGCACCTCAGGTTGGTAAGTGT
TTTCATGGCGATCGATGATCAAATGAGCGCTTGCTGCCTCATGGGTCCTA
TGTTACTGTGGAGGGATAGTAGCGACCAATTACTGTTGCACAGCCCAAAT
CTTGTGCCTCGTAAAGCTGTGTGACTCGGTACGCTTTTTACCGCCGCTCC
GGCAGGTCTGAAAATAACTTAGCAATGCATTTGTAGGGAGGCACACATGG
GCAGTTGAACACACGAATACAAATTAATAACATAAACGGAGAAAACTGCA
GCTATATACGATTTTTCTCTACACTGCTGTATTTACACTCACACACTCCA
GGTAAAAGGCATTTTCCGTGATCTTACAACGGTGTGCCCGGCACGTGCAG
CAGCATACACAGTTGAATAAACAAACAGTAGCAGGAGTGTGAGGATGAGC
CGACAAGTTCTGTGTTGGCGCGGCAAGTGACCTTTGGCTACCAAGCGGTG
CTTTCATCTGTCTGTTTCTTCCTTCCCCTCCCTTTGCAATCCTCCACGTT
TGTATGGAACCGAGCCTAAAATTGAGAAGTCATAAATACATGGAAGACGA
AACAGCACGTGGAGAACACAAGCCGATAAGTCAACGCAGACATTACAAAC
AGATGCAGTATGAGAGTTCAACCAGAGTCGGCCATTGGTTCAAATTGCAT
CTCGAGAATGCACTAAGATCGGAGAGAAATACAATTCTCAAAAGGAAGGA
AGGGCATTCCATATTGCTGTAATGCTAAGCAATGCTAAAAGATACTTGGA
CATTTTGGATGAGAAAGGGATATACGTTGCGGATACTTGCTTGTCGTGGG
TGATATCGTACTGAGGAGATTGCAAGCAGCACAAAGCCTGTTCCCTTTTG
TTGCATTCCGTTCTGTCAGCAGCAGCACTAAAGTGTATACATTTCCATTA
CAGCCTCCGGCGTTTTATGGTCAGCAACGCCATTTTGGCGAGACAAATGG
TCCATGTATTACCCCACCACACGTGATCATCCGAAATCTGCTACTATTTA
CTACACACATCTAAAAATATATAGAGAAAAAGGAAAAAATGAAATGTGGT
GAGTGAAAATAAACAACGGAGATGAGCAAACAATAGGAACACGATTATAA
CCAGGATTGTGTCTCGGTAGGATAAAAAGTATATCAGACGATATACCGAT
ATCATTGTGATATATCCGACAGGCTCCCGCACGGGCCGCCTGCCAGAGGC
AGGAAAAATACGCGATTTGGTTTCATCTCTCTCTCCAAAACCAAGCAACA
TAATTGTGGATCAGAGGGGCACAATGAACGTACTACCTAAACCGTGACAT
CCGTAACCATACTGCATCAAAATTTTCACCCACACTTGAGCAGTCGAGCT
AGGTGTATGTGCCAGGTGCACGGGACTGTGGGTATGAAGGGCTTGCTAAA
TTGATTGCACATCTCTGGGGAGGTACAGCTGAGGCCTCCGTACTACACGA
GGACATAAATACATTGGCTATCCTTCACGTCAGGTCAGTCGCTGATAAAC
CCGCAGTCAGATACAAACAACTGAACACCATACACAATCAACAGACGGCT
GATGATAGATCTATTTTACTATATAGCTGGTAATCGTAAACGTCGATGCG
ATACGGGATACAGACGGTGTATCATTAGATCGTCTGTAGTGATACACCCG
ATATTATCAACGTCAATACACAACCCTAGTTGTAACGAGTAGACCTGTTT
GGTCCAAAATAAGATAAAGTAGTAAGAGCGCATTCACAACAAGAATTGAT
GCCAGCAGCCCGTAGAACTCAAAAACAGAAACCGCGTTTTTCGCGTTTCG
CTGCACTGTACCTACGATACATTTGATGTACGACAAAAAAGTATATCCGC
ACATGCCCTTCTTCTTTTGTTTCTTTGATCGTTGTCACATGTGCGAGTCC
GATCACAGGGGTGCCTCTTGAACCGTTCTGTCCAACCGTCGAGCGGTTAA
TCCTTGCCCACCCCGCGACCACGTCGTTTTGGAACTATTTTTCACTTCTC
AGCTCAAGAAGTATAGAAAAACGGAATATTATTAAACACGTTTTTTCTAA
GTGTAGAAATAAAGAAACAAATGTCCAAAGTACTTAGCTCATACATAGCC
ATCGTAATGTGCCCACAAGACAGCACAGACAGAAGGAGCCTTCTCTGTAC
TCACAGCGCAGTATACACAAGATCAACAGAGACGCATGTTCATGGGGACA
TCATCTTCGTACCAAGGGCAAGAAAGAGAGAGAGAGAGCCTGAGAAACTA
TGAACAGACAGTGCAGTAAACGTTTTTCTATTATCTACACTCTTGTATCA
TGGTGGCGGTCATAGAGGGTGGCAGCATACACACAAAAGTAGGGACAGCG
TGTTTGCACATGTGTAGGTGCTGTCGAAGGCATAGGATGGGAGAGGTAAC
CAGGCGCTCAACAGGATGTGAAGGGAAGGTGTTGGCAGGGCGTCAACCTG
ACCAACTAAATTAATTGTAACCGTTGGTGTTCATAGCCTCCCATATAGTA
CAGCTGCATATTTCAACAATGCCCGTCTTTCTCCGAGCTCTATTTTTTTC
GCATCTGCCCCTCCCATAATACGAATCTAGGAGAGTCTCCACAGAAGCGG
ATTTATGTACAAATGTTGAGTGTTGCCCGCCTGCATTTCTTCCTTCACAG
GACACCTGTCTCACTTTACGAAGTTGTTGCTCTGCAATGTACCTGTATGC
GAGTGAGTGTAAGCGAGCGATGGCGAGCGCAGCGAGTCCGTGTATGTAGC
GTGAAACTTGGATCTTCATTGCGCCTACATGTGACGAGCGTAAACGGGTC
ACGGCGATCGCAGCAAGTCCATGTGCCTAGGCTATTTAGAGGTGCTGAGA
CATCGTCGACGTAGTCGCTCTCACTGGCGTAGCGGTGACCTGTCCATTAC
TACTAACAAAAAGCCGCTGGCTCAGTTCAAGATCTCGATTTCGCTTGGCG
TCCAGCAGTTTCACTTGGTGTTAGAGGGGCGAGCGGTACGCTGACACCTC
GTTATGGTGAATGTCGACCCCCCGGCGCCATTTTCCCCAGGCAACGATTA
CAGCATGAACCGCCATCACTCTTCTCACATGTAAAAATCTTCATTTTGTA
ATGTAAAGAAAGTACAGCACACATTACTACAATATTTATTATTGTTGTTG
CCTGGTACATGAGATTGTTCCCCACTCTCCCGTGACAACCCCCCGGCGCC
ATTTTCCCATGCTCTTGTATCCTTCCACTTGTTGGTACTGCATGGCACCA
TTTTGTCTCGATCTGTCTTTCTTTTTGTCTCTGTGTCTCCCTCTCATCTA
TGAAATTAATGTTTAGGCGCAGCAGCAGCGGCGGGACGCGCCCGACTAGA
TCGACGATGGCAACGTTTGATGCCCACCGCCATACCAAGCGCCATGAGTG
CGGCCAGCACCCGCAGGCTAGTGTCGTTGCGAGGCGGATCCGGAGCACCA
CGGCAGCCGCCCTTGGCCTCGTCAGCACCTACAACCTGCCGCAATGGCGT
GAGCGAGAACAAACGAGAAGATGCGGAGGGATTGGAAACAAGTGTAGATA
ACAATGGCGACAATGACAAGGAGAAGGAAGAGGAGAGAACTGAATCAACG
CAAAACGGCTTATGTCTCACGAGGCTTGATGGCGCCGACGACGGATGCGG
TGGCGACACGTTGCGGGCAACGGTCGGGCGACTGCTGTCCCCTGTAGCGG
TGGAAAAGGGTGCGGGGCGGCAAGGGACGAGAGAGGGGAGGGTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig2329:12288..16284+

>mRNA_H-paniculata_contig2329.6273.1 ID=mRNA_H-paniculata_contig2329.6273.1|Name=mRNA_H-paniculata_contig2329.6273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig2329:12288..16284+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGATGAATGCAAAGCGAGACATAATGTTGGGACGTCCTTTGCTTCT
CGTTTTGCTGTCGCTGTCGCTTTTGGCAAGCGCTCAAGGCGGCGGCGCTA
GCACATGGGGATGGCGGACCAGATTCAATTATGATGCAGCACCTCAGGTT
GATGACGATGAATGCAAAGCGAGACATAATGTTGGGACGTCCTTTGCTTC
TCGTTTTGCTGTCGCTGTCGCTTTTGGCAAGCGCTCAAGGCGGCGGCGCT
AGCACATGGGGATGGCGGACCAGATTCAATTATGATGCAGCACCTCAGGT
TGGCGCAGCAGCAGCGGCGGGACGCGCCCGACTAGATCGACGATGGCAAC
GTTTGATGCCCACCGCCATACCAAGCGCCATGAGTGCGGCCAGCACCCGC
AGGCTAGTGTCGTTGCGAGGCGGATCCGGAGCACCACGGCAGCCGCCCTT
GGCCTCGTCAGCACCTACAACCTGCCGCAATGGCGTGAGCGAGAACAAAC
GAGAAGATGCGGAGGGATTGGAAACAAGTGTAGATAACAATGGCGACAAT
GACAAGGAGAAGGAAGAGGAGAGAACTGAATCAACGCAAAACGGCTTATG
TCTCACGAGGCTTGATGGCGCCGACGACGGATGCGGTGGCGACACGTTGC
GGGCAACGGTCGGGCGACTGCTGTCCCCTGTAGCGGTGGAAAAGGGTGCG
GGGCGGCAAGGGACGAGAGAGGGGAGGGTGGTGGCGCAGCAGCAGCGGCG
GGACGCGCCCGACTAGATCGACGATGGCAACGTTTGATGCCCACCGCCAT
ACCAAGCGCCATGAGTGCGGCCAGCACCCGCAGGCTAGTGTCGTTGCGAG
GCGGATCCGGAGCACCACGGCAGCCGCCCTTGGCCTCGTCAGCACCTACA
ACCTGCCGCAATGGCGTGAGCGAGAACAAACGAGAAGATGCGGAGGGATT
GGAAACAAGTGTAGATAACAATGGCGACAATGACAAGGAGAAGGAAGAGG
AGAGAACTGAATCAACGCAAAACGGCTTATGTCTCACGAGGCTTGATGGC
GCCGACGACGGATGCGGTGGCGACACGTTGCGGGCAACGGTCGGGCGACT
GCTGTCCCCTGTAGCGGTGGAAAAGGGTGCGGGGCGGCAAGGGACGAGAG
AGGGGAGGGTGGTG
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