mRNA_H-paniculata_contig23263.6267.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23263.6267.1
Unique NamemRNA_H-paniculata_contig23263.6267.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 3.390e-67
Identity = 132/265 (49.81%), Postives = 171/265 (64.53%), Query Frame = 1
Query:    1 DLVRFLQAVNWMRTALPALELTIAPLRELMKLHMWGT-SRTKCVAARK-------TGKRREAWGDVRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLWDGVDVFCEHRNLAYIFGA-ASNEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRAVEADGGPDSGSPQVDSRVIAVFAPSTADYTLPGKDVVQDRQ 768
            +L++FLQAVNW+RT+LP +   +APLRE ++LHM G  +RTK VA+ +       T    E+W   ++ +     L+    G +VLMFPD SD  WGSF+T+VP ++V   + + +M HEPLG+LSG F+GSQLRWATVDKE FAI+STFRRLEYLLW GV +  +HRNLAYIF   A      K TAQRL +W+  LGQ+ Y IQHI G  N WGD+LSR   V          P V +R  AVF PST D  LP K+ +++ Q
Sbjct:  888 ELMQFLQAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNV----------PAVSNRSAAVFMPSTPDCNLPSKNAIREVQ 1142          
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 9.240e-67
Identity = 129/262 (49.24%), Postives = 166/262 (63.36%), Query Frame = 1
Query:   10 RFLQAVNWMRTALPALELTIAPLRELMKLHMWGT-SRTKCVAARK-------TGKRREAWGDVRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLWDGVDVFCEHRNLAYIFGA-ASNEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRAVEADGGPDSGSPQVDSRVIAVFAPSTADYTLPGKDVVQDRQ 768
            R + AVNW+RT+LP +   +APLRE ++LHM G  +RTK VA+ +       T    E+W   ++ +     L+    G +VLMFPD SD  WGSF+T+VP ++V   + + +M HEPLG+LSG F+GSQLRWATVDKE FAI+STFRRLEYLLW GV +  +HRNLAYIF   A      K TAQRL +W+  LGQ+ Y IQHI G  N WGD+LSR   V          P V +R  AVF PST D  LP K+ +++ Q
Sbjct:  115 RRISAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNV----------PAVSNRSAAVFMPSTPDCNLPSKNAIREVQ 366          
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 2.390e-63
Identity = 131/268 (48.88%), Postives = 167/268 (62.31%), Query Frame = 1
Query:    1 DLVRFLQAVNWMRTALPALELTIAPLRELMKLHMWGT-SRTKCVAARK-------TGKRREAWGDVRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQL-RWATVDKEAFAIVSTFRRLEYLLWDGVDVFCEHRNLAYIFGA-ASNEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRAVEADGGPDSGSPQVDSRVIAVFAPSTADYTLPGKDVVQDRQDA 774
            +L++FLQAVNW+RT+LP +   + PLR  ++ H+ G  SRTK VA  +       T    EAW   ++ +     L     G +VLMFPD SD  WGSFLT+VP  Q+  G+ + +M HEP+G+LSG FKG+Q  RWATVDKE +AIVSTF+RLEYLLWD V +F +HRNLAYIF   A     +K TAQRL  W+  LGQ+ Y I+HI G  N WGD+LSR  +V          P V  R  AV+APS  D  +P K VV+D Q A
Sbjct:  986 ELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHPSPGCAVLMFPDASDEHWGSFLTQVPQDQLDRGVPVEDMAHEPMGFLSGTFKGAQQQRWATVDKEGYAIVSTFKRLEYLLWDSVHIFTDHRNLAYIFDPEACVSAVAKTTAQRLDQWKAVLGQYDYTIRHISGERNCWGDLLSRWVSV----------PSVSVRAAAVYAPSEPDAAMPSKQVVRDAQQA 1243          
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 9.610e-38
Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 3
Query:  999 MEANVAEFVRQCLHCLNSRSGSRVPRPLGELLHGTEVGEVLHFDFLHLGASDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPALECTAKVAAATVLRWCTVFGAPGVFVSDIARHFKNRLVSLLATALGAEHRF 1400
            M+ +V EFV+QCLHC++S+SG  VPRP GE +HG   GEVLHFD+LH+G S PL    +    G  YLLV++DD+S + W+EP   CTA++ A  +L WC   G P V+VSD A HFKN ++  L  ALG E RF
Sbjct:    1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRF 135          
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A0G4ITT3_PLABS (Reverse transcriptase domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ITT3_PLABS)

HSP 1 Score: 145 bits (366), Expect = 1.780e-34
Identity = 84/220 (38.18%), Postives = 120/220 (54.55%), Query Frame = 1
Query:    1 DLVRFLQAVNWMRTALPALELTIAPLRELMKLHMWGTSRTKCVAARKTGKRREAWGDVRNR--------LVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLWDGVD--VFCEHRNLAYIFGAASN-EPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDM 627
            DL +F+  +NWMR+A+P     + PL++L+          K    R+       WGD  +R        L         K GW V MFPD S+ FW  FLT++P + + +  S  E QHEPL ++SG+FK +QLRWAT++KEAFAIV    RL++ L+  +   +F +HRNLA+I         PS+ T  RL  W+  L    + I+HIPG EN+W D+
Sbjct:  287 DLQQFICGLNWMRSAIPRFAERVHPLQQLLLEASRSIGSLKKRQLRRIRLDHIGWGDQHSRSFEALKEILANLMTTAHPKDGWIVCMFPDASNQFWSVFLTQIPYSDLVK--SYDEQQHEPLAFISGSFKDNQLRWATIEKEAFAIVEGCFRLKHFLYTSLPFRIFTDHRNLAFILDPYRYMTSPSRTTGDRLERWRLQLEFLNFEIEHIPGDENIWADL 504          
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR)

HSP 1 Score: 142 bits (359), Expect = 6.410e-33
Identity = 78/196 (39.80%), Postives = 106/196 (54.08%), Query Frame = 3
Query:  828 ADGLY-----RVTFRGVPLLWIPRNEHTLQARLKVCAHM*EAGHRGVDATVNRLAAYCVWDGMEANVAEFVRQCLHCLNSRSGSRVPRPLGELLHGTEVGEVLHFDFLHLGASDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPALECTAKVAAATVLRWCTVFGAPGVFVSDIARHFKNRLVSLLATALGAEHRF 1400
            ADGL      +V  RG+ + WIP+ +  LQ  + VC+H    GHRG+DAT + +     W  ++ +V   VR C HC+ +R+G  VPRPLG  +HG    EV+H DFL++G     K+         YLL+L DD+S Y+WL P  + TA  AA  +  W  VFG     VSD   HFKN L+  L   L  +H F
Sbjct:  258 ADGLKFDESEKVWKRGMQI-WIPQQDLELQLSIMVCSHCGSIGHRGMDATGSVIRENFWWSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKK---------YLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSLIKSLTDELRTKHHF 443          
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: W4GS77_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GS77_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.840e-32
Identity = 89/267 (33.33%), Postives = 141/267 (52.81%), Query Frame = 1
Query:    1 DLVRFLQAVNWMRTALPALELTIAPLRELMKLHMWGTSRTKCVAARKTGKRREAWGDVRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLW--DGVDVFCEHRNLAYIFG-AASNEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRAVEADGGPDSGSPQVDSR-VIAVFAP-STADYTLPGKDVVQDRQDATAQG 786
            DL +F+ A NWMR ++P     + PLR L+ +        K  A  ++    + + DV++ L     L   +   +V +F D SDLFWG+  T+VP A +   L + + +H+ L +++G+F G+  RW  V+KEA+A+V + RRL+YL+    G  +F +HRNL YIF  + SN   +K  A +L  W   +  F Y I+   G  N+WGD+L R  +  AD       P V+ R +I V +P    D+  P    ++  Q +T +G
Sbjct:  437 DLQQFVCATNWMRASIPGYNQLVDPLRHLLDVATKAAGSCKKTALVRSSDYLKCFNDVKHALAHVVPLSHPREDMTVCVFTDASDLFWGAVATQVPPADL--DLPLEDQRHQRLAFINGSFFGASARWPIVEKEAYAMVESCRRLDYLVVRPGGFRLFTDHRNLVYIFNPSGSNTNMTKYQADKLQRWSLAMSTFPYTIECDSGDANVWGDLLCRWGSAPAD------QPVVNVRKLIHVVSPLQQVDFEWPTAATIRGIQRSTMEG 695          
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6G0WUQ0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUQ0_9STRA)

HSP 1 Score: 140 bits (354), Expect = 4.920e-32
Identity = 88/280 (31.43%), Postives = 140/280 (50.00%), Query Frame = 1
Query:    1 DLVRFLQAVNWMRTALPALELTIAPLRELMKLHMWGTSRTKCVAARKTGKRREAWGD--------VRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLWD--GVDVFCEHRNLAYIFGAASNEPP-SKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRAVEADGGPDSGSPQVDSRVIAVFAP-STADYTLPGKDVVQDRQDATAQGSRRRLP 804
            DL +F+ A NWMR ++P     +APLR+L+          K +   +       W +        +++ L+    L   +    V ++ D S+ FWG+  T+VP   +   L + + +H+PL +LSGAF G+  RW  V+KEAFA+V + +RL+Y+L    G  +F +H+NL YIF  A   P  ++  A +L  W   L  F Y I+ +PG +N+WGD+LSR  A      P +   Q+    +AV +P   AD+  P    +   Q +  +G     P
Sbjct:  880 DLQQFVCATNWMRASIPCYTELVAPLRQLLDQATKKIGSAKKIKLARVQLSTVGWDNSHMACFNRLKDALLAMVPLAHPRADMMVCLYTDASEGFWGAIATQVPYDDL--SLPLEDQRHQPLAFLSGAFTGASERWPIVEKEAFAVVESCKRLDYILIRPAGFRLFTDHKNLQYIFNPAGQSPNMARYQAHKLERWALVLSSFPYTIECLPGEDNVWGDLLSRWGASTQAPAPTAAVRQL----LAVVSPLQQADFDWPTTATIVKTQRSAIEGGENPPP 1153          
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6A4Z511_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z511_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.230e-31
Identity = 88/275 (32.00%), Postives = 138/275 (50.18%), Query Frame = 1
Query:    1 DLVRFLQAVNWMRTALPALELTIAPLRELMKLHMWGTSRTKCVAARKTGKRREAWG--------DVRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLWD--GVDVFCEHRNLAYIFG-AASNEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRAVEADGGPDSGSPQVDSR-VIAVFAP-STADYTLPGKDVVQDRQDATAQG 786
            DL +F+ A NWMR ++P     + PLR L+ +        K  A  +       W         +V++ L     L   +   +V +F D SDLFWG+  T+VP A +   L + + +H+PL ++SG+F G+  RW  V+KEA+A+V + +RL+YL+    G  +F +H NL YIF  + SN   +K  A +L  W   +  F Y I+ + G  N+WGD+LSR  +   D       P  + R +I V +P    D+  P    +   Q +T +G
Sbjct:  153 DLQQFVCATNWMRASIPGYNQLVDPLRRLLDVATKAAGSCKKTALVRVALPAVGWSSDHLKCFNEVKHALAHVVPLSHPREDMTVCVFTDASDLFWGAVATQVPPADL--DLPLEDQRHQPLAFISGSFSGASARWPIVEKEAYAVVESCKRLDYLVVHPGGFRLFTDHHNLVYIFNPSGSNANMAKYQADKLQRWSLVMSTFPYTIECVSGDANVWGDLLSRWGSAPTD------QPVANVRKLIHVVSPLQQVDFEWPTAATISGIQRSTMEG 419          
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6G0WUU6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUU6_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.860e-31
Identity = 79/226 (34.96%), Postives = 130/226 (57.52%), Query Frame = 1
Query:    1 DLVRFLQAVNWMRTALPALELTIAPLRE-LMKLHMWGTSRTK-------CVAARKTGKRREAWGDVRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLW--DGVDVFCEHRNLAYIFGAAS-NEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRA 645
            DL++FL AVNWMR+ +P     +APL   L ++H     +TK         A   +   +  +  ++ +L +  +L        V +FPD S  FWG+ +T+VP+ Q+   LS+    HEPL +LSG F+GSQ+ W+ ++KEAF+IV T +R+++LL   +G  ++ +HRNL +++   S +   ++ TA+++  W   +  F Y I HI G +N+W D+LSR  A
Sbjct:  292 DLMQFLCAVNWMRSHIPRYNEVVAPLMAALQRVHSQSGLKTKKKLEKFVLPADFFSDAEKTNYDHIKEQLSSSVKLAHHDPSKMVCVFPDASLRFWGAIVTQVPMNQL--SLSIDSQDHEPLAFLSGPFRGSQMAWSIIEKEAFSIVETCKRMDFLLLRPNGFKLYTDHRNLTFLYDPHSCSRDIARYTAEKVQRWGLVMMGFNYTIHHIDGEDNVWADLLSRWGA 515          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE3.390e-6749.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE9.240e-6749.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K5A5_9PHAE2.390e-6348.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS6_9PHAE9.610e-3851.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4ITT3_PLABS1.780e-3438.18Reverse transcriptase domain-containing protein n=... [more]
R7Q542_CHOCR6.410e-3339.80Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
W4GS77_9STRA2.840e-3233.33Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A6G0WUQ0_9STRA4.920e-3231.43Uncharacterized protein n=3 Tax=Aphanomyces euteic... [more]
A0A6A4Z511_9STRA1.230e-3132.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0WUU6_9STRA1.860e-3134.96Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23263contigH-paniculata_contig23263:2590..4010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue6.9e-25
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1400
Cds size816
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23263.6267.1prot_H-paniculata_contig23263.6267.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23263 2623..3459 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.968781-UTR-H-paniculata_contig23263:2589..26221622929657.968781-UTR-H-paniculata_contig23263:2589..2622Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23263 2590..2622 +
1691480954.4896643-UTR-H-paniculata_contig23263:2589..26221691480954.4896643-UTR-H-paniculata_contig23263:2589..2622Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23263 2590..2622 +
1622929658.0414822-UTR-H-paniculata_contig23263:3459..40101622929658.0414822-UTR-H-paniculata_contig23263:3459..4010Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23263 3460..4010 +
1691480954.5321538-UTR-H-paniculata_contig23263:3459..40101691480954.5321538-UTR-H-paniculata_contig23263:3459..4010Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23263 3460..4010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.9928696-CDS-H-paniculata_contig23263:2622..27301622929657.9928696-CDS-H-paniculata_contig23263:2622..2730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23263 2623..2730 +
1691480954.5107605-CDS-H-paniculata_contig23263:2622..27301691480954.5107605-CDS-H-paniculata_contig23263:2622..2730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23263 2623..2730 +
1622929658.0146477-CDS-H-paniculata_contig23263:2751..34591622929658.0146477-CDS-H-paniculata_contig23263:2751..3459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23263 2752..3459 +
1691480954.524464-CDS-H-paniculata_contig23263:2751..34591691480954.524464-CDS-H-paniculata_contig23263:2751..3459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23263 2752..3459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23263.6267.1

>prot_H-paniculata_contig23263.6267.1 ID=prot_H-paniculata_contig23263.6267.1|Name=mRNA_H-paniculata_contig23263.6267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp
MRTALPALELTIAPLRELMKLHMWGTSRTKCVAARKTGKRREAWGDVRNR
LVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQH
EPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLWDGVDVFCEHRN
LAYIFGAASNEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLS
RMRAVEADGGPDSGSPQVDSRVIAVFAPSTADYTLPGKDVVQDRQDATAQ
GSRRRLPRWVMRCAGLMVCTG*
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mRNA from alignment at H-paniculata_contig23263:2590..4010+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23263.6267.1 ID=mRNA_H-paniculata_contig23263.6267.1|Name=mRNA_H-paniculata_contig23263.6267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1421bp|location=Sequence derived from alignment at H-paniculata_contig23263:2590..4010+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTGGTGCGGTTCCTGCAAGCCGTGAACTGGATGCGGACTGCGCTCCC CGCGCTGGAACTTACGATCGCCCCGTTACGGGAGCTGATGAAGCTTCACA TGTGGGGGACTAGCCGTACCAAGTGCGTGGCGGCACGCAAGGTTATCACG GCCGAAGAATAGACGGGAAAGCGTCGTGAGGCTTGGGGGGACGTGCGGAA CCGTCTGGTGACCGGGGCGGAGCTGCACCGCAGGAAGGGTGGATGGAGCG TTCTCATGTTTCCGGATACAAGCGACCTGTTCTGGGGGAGTTTTCTCACC AAGGTTCCTATTGCGCAGGTAAGGGAGGGCTTGTCGATGGCGGAGATGCA GCATGAGCCGCTGGGGTATCTCAGCGGCGCATTCAAGGGCTCGCAGCTGC GTTGGGCGACGGTGGACAAGGAGGCGTTCGCGATCGTGAGCACGTTCCGT CGGCTGGAATATCTGCTGTGGGATGGGGTGGACGTTTTCTGCGAGCATCG CAACCTGGCGTACATCTTTGGTGCGGCCAGCAACGAGCCCCCTTCCAAGG TCACTGCCCAACGACTGCTGCACTGGCAAACGTTCCTCGGACAGTTCCGT TACCGAATCCAGCATATTCCCGGCGTGGAAAACCTGTGGGGGGACATGCT GTCGAGGATGAGGGCAGTAGAAGCCGACGGAGGGCCGGACAGCGGAAGTC CGCAAGTGGACTCGCGGGTCATCGCGGTGTTTGCACCTTCTACAGCGGAC TACACGCTTCCCGGTAAGGATGTGGTGCAAGACCGACAAGACGCGACCGC GCAGGGCAGCCGACGGCGGTTACCAAGGTGGGTGATGCGATGCGCGGGGC TGATGGTCTGTACCGGGTGACTTTTCGGGGGGTGCCTTTGCTGTGGATTC CCCGCAACGAGCACACGCTGCAGGCGCGGCTCAAGGTATGCGCCCACATG TAGGAGGCGGGCCACCGGGGCGTGGACGCTACGGTCAACCGCCTTGCGGC ATACTGCGTGTGGGACGGGATGGAGGCGAACGTGGCGGAGTTTGTCCGGC AGTGTTTGCACTGTTTGAATTCCAGGTCAGGGTCGCGGGTGCCCCGTCCG TTAGGCGAGCTGTTGCACGGCACGGAGGTGGGGGAGGTACTTCACTTCGA CTTCCTGCATCTGGGCGCGAGCGACCCGCTCAAGGAGCACGAGGTGATCC GCGGGGGCTGCCCGTACCTTCTCGTGTTGCTGGATGACGTCAGCGGTTAC GTGTGGCTAGAGCCGGCGCTGGAATGCACGGCGAAAGTGGCTGCCGCCAC CGTGTTGAGGTGGTGCACGGTGTTTGGAGCGCCTGGGGTGTTCGTCAGCG ACATCGCCCGTCACTTCAAGAACCGACTGGTCAGCCTGTTGGCGACCGCG CTGGGAGCAGAGCATCGCTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig23263:2590..4010+

>mRNA_H-paniculata_contig23263.6267.1 ID=mRNA_H-paniculata_contig23263.6267.1|Name=mRNA_H-paniculata_contig23263.6267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig23263:2590..4010+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGACTGCGCTCCCCGCGCTGGAACTTACGATCGCCCCGTTACGGGA
GCTGATGAAGCTTCACATGTGGGGGACTAGCCGTACCAAGTGCGTGGCGG
CACGCAAGATGCGGACTGCGCTCCCCGCGCTGGAACTTACGATCGCCCCG
TTACGGGAGCTGATGAAGCTTCACATGTGGGGGACTAGCCGTACCAAGTG
CGTGGCGGCACGCAAGACGGGAAAGCGTCGTGAGGCTTGGGGGGACGTGC
GGAACCGTCTGGTGACCGGGGCGGAGCTGCACCGCAGGAAGGGTGGATGG
AGCGTTCTCATGTTTCCGGATACAAGCGACCTGTTCTGGGGGAGTTTTCT
CACCAAGGTTCCTATTGCGCAGGTAAGGGAGGGCTTGTCGATGGCGGAGA
TGCAGCATGAGCCGCTGGGGTATCTCAGCGGCGCATTCAAGGGCTCGCAG
CTGCGTTGGGCGACGGTGGACAAGGAGGCGTTCGCGATCGTGAGCACGTT
CCGTCGGCTGGAATATCTGCTGTGGGATGGGGTGGACGTTTTCTGCGAGC
ATCGCAACCTGGCGTACATCTTTGGTGCGGCCAGCAACGAGCCCCCTTCC
AAGGTCACTGCCCAACGACTGCTGCACTGGCAAACGTTCCTCGGACAGTT
CCGTTACCGAATCCAGCATATTCCCGGCGTGGAAAACCTGTGGGGGGACA
TGCTGTCGAGGATGAGGGCAGTAGAAGCCGACGGAGGGCCGGACAGCGGA
AGTCCGCAAGTGGACTCGCGGGTCATCGCGGTGTTTGCACCTTCTACAGC
GGACTACACGCTTCCCGGTAAGGATGTGGTGCAAGACCGACAAGACGCGA
CCGCGCAGGGCAGCCGACGGCGGTTACCAAGGTGGGTGATGCGATGCGCG
GGGCTGATGGTCTGTACCGGGTGAACGGGAAAGCGTCGTGAGGCTTGGGG
GGACGTGCGGAACCGTCTGGTGACCGGGGCGGAGCTGCACCGCAGGAAGG
GTGGATGGAGCGTTCTCATGTTTCCGGATACAAGCGACCTGTTCTGGGGG
AGTTTTCTCACCAAGGTTCCTATTGCGCAGGTAAGGGAGGGCTTGTCGAT
GGCGGAGATGCAGCATGAGCCGCTGGGGTATCTCAGCGGCGCATTCAAGG
GCTCGCAGCTGCGTTGGGCGACGGTGGACAAGGAGGCGTTCGCGATCGTG
AGCACGTTCCGTCGGCTGGAATATCTGCTGTGGGATGGGGTGGACGTTTT
CTGCGAGCATCGCAACCTGGCGTACATCTTTGGTGCGGCCAGCAACGAGC
CCCCTTCCAAGGTCACTGCCCAACGACTGCTGCACTGGCAAACGTTCCTC
GGACAGTTCCGTTACCGAATCCAGCATATTCCCGGCGTGGAAAACCTGTG
GGGGGACATGCTGTCGAGGATGAGGGCAGTAGAAGCCGACGGAGGGCCGG
ACAGCGGAAGTCCGCAAGTGGACTCGCGGGTCATCGCGGTGTTTGCACCT
TCTACAGCGGACTACACGCTTCCCGGTAAGGATGTGGTGCAAGACCGACA
AGACGCGACCGCGCAGGGCAGCCGACGGCGGTTACCAAGGTGGGTGATGC
GATGCGCGGGGCTGATGGTCTGTACCGGGTGA
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