mRNA_H-paniculata_contig23263.6267.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 244 bits (622), Expect = 3.390e-67 Identity = 132/265 (49.81%), Postives = 171/265 (64.53%), Query Frame = 1
Query: 1 DLVRFLQAVNWMRTALPALELTIAPLRELMKLHMWGT-SRTKCVAARK-------TGKRREAWGDVRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLWDGVDVFCEHRNLAYIFGA-ASNEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRAVEADGGPDSGSPQVDSRVIAVFAPSTADYTLPGKDVVQDRQ 768
+L++FLQAVNW+RT+LP + +APLRE ++LHM G +RTK VA+ + T E+W ++ + L+ G +VLMFPD SD WGSF+T+VP ++V + + +M HEPLG+LSG F+GSQLRWATVDKE FAI+STFRRLEYLLW GV + +HRNLAYIF A K TAQRL +W+ LGQ+ Y IQHI G N WGD+LSR V P V +R AVF PST D LP K+ +++ Q
Sbjct: 888 ELMQFLQAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNV----------PAVSNRSAAVFMPSTPDCNLPSKNAIREVQ 1142
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE) HSP 1 Score: 236 bits (603), Expect = 9.240e-67 Identity = 129/262 (49.24%), Postives = 166/262 (63.36%), Query Frame = 1
Query: 10 RFLQAVNWMRTALPALELTIAPLRELMKLHMWGT-SRTKCVAARK-------TGKRREAWGDVRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLWDGVDVFCEHRNLAYIFGA-ASNEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRAVEADGGPDSGSPQVDSRVIAVFAPSTADYTLPGKDVVQDRQ 768
R + AVNW+RT+LP + +APLRE ++LHM G +RTK VA+ + T E+W ++ + L+ G +VLMFPD SD WGSF+T+VP ++V + + +M HEPLG+LSG F+GSQLRWATVDKE FAI+STFRRLEYLLW GV + +HRNLAYIF A K TAQRL +W+ LGQ+ Y IQHI G N WGD+LSR V P V +R AVF PST D LP K+ +++ Q
Sbjct: 115 RRISAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNV----------PAVSNRSAAVFMPSTPDCNLPSKNAIREVQ 366
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 233 bits (593), Expect = 2.390e-63 Identity = 131/268 (48.88%), Postives = 167/268 (62.31%), Query Frame = 1
Query: 1 DLVRFLQAVNWMRTALPALELTIAPLRELMKLHMWGT-SRTKCVAARK-------TGKRREAWGDVRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQL-RWATVDKEAFAIVSTFRRLEYLLWDGVDVFCEHRNLAYIFGA-ASNEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRAVEADGGPDSGSPQVDSRVIAVFAPSTADYTLPGKDVVQDRQDA 774
+L++FLQAVNW+RT+LP + + PLR ++ H+ G SRTK VA + T EAW ++ + L G +VLMFPD SD WGSFLT+VP Q+ G+ + +M HEP+G+LSG FKG+Q RWATVDKE +AIVSTF+RLEYLLWD V +F +HRNLAYIF A +K TAQRL W+ LGQ+ Y I+HI G N WGD+LSR +V P V R AV+APS D +P K VV+D Q A
Sbjct: 986 ELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHPSPGCAVLMFPDASDEHWGSFLTQVPQDQLDRGVPVEDMAHEPMGFLSGTFKGAQQQRWATVDKEGYAIVSTFKRLEYLLWDSVHIFTDHRNLAYIFDPEACVSAVAKTTAQRLDQWKAVLGQYDYTIRHISGERNCWGDLLSRWVSV----------PSVSVRAAAVYAPSEPDAAMPSKQVVRDAQQA 1243
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 152 bits (384), Expect = 9.610e-38 Identity = 70/135 (51.85%), Postives = 91/135 (67.41%), Query Frame = 3
Query: 999 MEANVAEFVRQCLHCLNSRSGSRVPRPLGELLHGTEVGEVLHFDFLHLGASDPLKEHEVIRG-GCPYLLVLLDDVSGYVWLEPALECTAKVAAATVLRWCTVFGAPGVFVSDIARHFKNRLVSLLATALGAEHRF 1400
M+ +V EFV+QCLHC++S+SG VPRP GE +HG GEVLHFD+LH+G S PL + G YLLV++DD+S + W+EP CTA++ A +L WC G P V+VSD A HFKN ++ L ALG E RF
Sbjct: 1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRF 135
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A0G4ITT3_PLABS (Reverse transcriptase domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ITT3_PLABS) HSP 1 Score: 145 bits (366), Expect = 1.780e-34 Identity = 84/220 (38.18%), Postives = 120/220 (54.55%), Query Frame = 1
Query: 1 DLVRFLQAVNWMRTALPALELTIAPLRELMKLHMWGTSRTKCVAARKTGKRREAWGDVRNR--------LVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLWDGVD--VFCEHRNLAYIFGAASN-EPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDM 627
DL +F+ +NWMR+A+P + PL++L+ K R+ WGD +R L K GW V MFPD S+ FW FLT++P + + + S E QHEPL ++SG+FK +QLRWAT++KEAFAIV RL++ L+ + +F +HRNLA+I PS+ T RL W+ L + I+HIPG EN+W D+
Sbjct: 287 DLQQFICGLNWMRSAIPRFAERVHPLQQLLLEASRSIGSLKKRQLRRIRLDHIGWGDQHSRSFEALKEILANLMTTAHPKDGWIVCMFPDASNQFWSVFLTQIPYSDLVK--SYDEQQHEPLAFISGSFKDNQLRWATIEKEAFAIVEGCFRLKHFLYTSLPFRIFTDHRNLAFILDPYRYMTSPSRTTGDRLERWRLQLEFLNFEIEHIPGDENIWADL 504
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR) HSP 1 Score: 142 bits (359), Expect = 6.410e-33 Identity = 78/196 (39.80%), Postives = 106/196 (54.08%), Query Frame = 3
Query: 828 ADGLY-----RVTFRGVPLLWIPRNEHTLQARLKVCAHM*EAGHRGVDATVNRLAAYCVWDGMEANVAEFVRQCLHCLNSRSGSRVPRPLGELLHGTEVGEVLHFDFLHLGASDPLKEHEVIRGGCPYLLVLLDDVSGYVWLEPALECTAKVAAATVLRWCTVFGAPGVFVSDIARHFKNRLVSLLATALGAEHRF 1400
ADGL +V RG+ + WIP+ + LQ + VC+H GHRG+DAT + + W ++ +V VR C HC+ +R+G VPRPLG +HG EV+H DFL++G K+ YLL+L DD+S Y+WL P + TA AA + W VFG VSD HFKN L+ L L +H F
Sbjct: 258 ADGLKFDESEKVWKRGMQI-WIPQQDLELQLSIMVCSHCGSIGHRGMDATGSVIRENFWWSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMGQGLSNKK---------YLLILRDDLSSYIWLWPTEDTTAASAAEALCVWIGVFGCMEWMVSDQGSHFKNSLIKSLTDELRTKHHF 443
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: W4GS77_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GS77_9STRA) HSP 1 Score: 141 bits (355), Expect = 2.840e-32 Identity = 89/267 (33.33%), Postives = 141/267 (52.81%), Query Frame = 1
Query: 1 DLVRFLQAVNWMRTALPALELTIAPLRELMKLHMWGTSRTKCVAARKTGKRREAWGDVRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLW--DGVDVFCEHRNLAYIFG-AASNEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRAVEADGGPDSGSPQVDSR-VIAVFAP-STADYTLPGKDVVQDRQDATAQG 786
DL +F+ A NWMR ++P + PLR L+ + K A ++ + + DV++ L L + +V +F D SDLFWG+ T+VP A + L + + +H+ L +++G+F G+ RW V+KEA+A+V + RRL+YL+ G +F +HRNL YIF + SN +K A +L W + F Y I+ G N+WGD+L R + AD P V+ R +I V +P D+ P ++ Q +T +G
Sbjct: 437 DLQQFVCATNWMRASIPGYNQLVDPLRHLLDVATKAAGSCKKTALVRSSDYLKCFNDVKHALAHVVPLSHPREDMTVCVFTDASDLFWGAVATQVPPADL--DLPLEDQRHQRLAFINGSFFGASARWPIVEKEAYAMVESCRRLDYLVVRPGGFRLFTDHRNLVYIFNPSGSNTNMTKYQADKLQRWSLAMSTFPYTIECDSGDANVWGDLLCRWGSAPAD------QPVVNVRKLIHVVSPLQQVDFEWPTAATIRGIQRSTMEG 695
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6G0WUQ0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUQ0_9STRA) HSP 1 Score: 140 bits (354), Expect = 4.920e-32 Identity = 88/280 (31.43%), Postives = 140/280 (50.00%), Query Frame = 1
Query: 1 DLVRFLQAVNWMRTALPALELTIAPLRELMKLHMWGTSRTKCVAARKTGKRREAWGD--------VRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLWD--GVDVFCEHRNLAYIFGAASNEPP-SKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRAVEADGGPDSGSPQVDSRVIAVFAP-STADYTLPGKDVVQDRQDATAQGSRRRLP 804
DL +F+ A NWMR ++P +APLR+L+ K + + W + +++ L+ L + V ++ D S+ FWG+ T+VP + L + + +H+PL +LSGAF G+ RW V+KEAFA+V + +RL+Y+L G +F +H+NL YIF A P ++ A +L W L F Y I+ +PG +N+WGD+LSR A P + Q+ +AV +P AD+ P + Q + +G P
Sbjct: 880 DLQQFVCATNWMRASIPCYTELVAPLRQLLDQATKKIGSAKKIKLARVQLSTVGWDNSHMACFNRLKDALLAMVPLAHPRADMMVCLYTDASEGFWGAIATQVPYDDL--SLPLEDQRHQPLAFLSGAFTGASERWPIVEKEAFAVVESCKRLDYILIRPAGFRLFTDHKNLQYIFNPAGQSPNMARYQAHKLERWALVLSSFPYTIECLPGEDNVWGDLLSRWGASTQAPAPTAAVRQL----LAVVSPLQQADFDWPTTATIVKTQRSAIEGGENPPP 1153
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6A4Z511_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z511_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.230e-31 Identity = 88/275 (32.00%), Postives = 138/275 (50.18%), Query Frame = 1
Query: 1 DLVRFLQAVNWMRTALPALELTIAPLRELMKLHMWGTSRTKCVAARKTGKRREAWG--------DVRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLWD--GVDVFCEHRNLAYIFG-AASNEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRAVEADGGPDSGSPQVDSR-VIAVFAP-STADYTLPGKDVVQDRQDATAQG 786
DL +F+ A NWMR ++P + PLR L+ + K A + W +V++ L L + +V +F D SDLFWG+ T+VP A + L + + +H+PL ++SG+F G+ RW V+KEA+A+V + +RL+YL+ G +F +H NL YIF + SN +K A +L W + F Y I+ + G N+WGD+LSR + D P + R +I V +P D+ P + Q +T +G
Sbjct: 153 DLQQFVCATNWMRASIPGYNQLVDPLRRLLDVATKAAGSCKKTALVRVALPAVGWSSDHLKCFNEVKHALAHVVPLSHPREDMTVCVFTDASDLFWGAVATQVPPADL--DLPLEDQRHQPLAFISGSFSGASARWPIVEKEAYAVVESCKRLDYLVVHPGGFRLFTDHHNLVYIFNPSGSNANMAKYQADKLQRWSLVMSTFPYTIECVSGDANVWGDLLSRWGSAPTD------QPVANVRKLIHVVSPLQQVDFEWPTAATISGIQRSTMEG 419
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Match: A0A6G0WUU6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUU6_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.860e-31 Identity = 79/226 (34.96%), Postives = 130/226 (57.52%), Query Frame = 1
Query: 1 DLVRFLQAVNWMRTALPALELTIAPLRE-LMKLHMWGTSRTK-------CVAARKTGKRREAWGDVRNRLVTGAELHRRKGGWSVLMFPDTSDLFWGSFLTKVPIAQVREGLSMAEMQHEPLGYLSGAFKGSQLRWATVDKEAFAIVSTFRRLEYLLW--DGVDVFCEHRNLAYIFGAAS-NEPPSKVTAQRLLHWQTFLGQFRYRIQHIPGVENLWGDMLSRMRA 645
DL++FL AVNWMR+ +P +APL L ++H +TK A + + + ++ +L + +L V +FPD S FWG+ +T+VP+ Q+ LS+ HEPL +LSG F+GSQ+ W+ ++KEAF+IV T +R+++LL +G ++ +HRNL +++ S + ++ TA+++ W + F Y I HI G +N+W D+LSR A
Sbjct: 292 DLMQFLCAVNWMRSHIPRYNEVVAPLMAALQRVHSQSGLKTKKKLEKFVLPADFFSDAEKTNYDHIKEQLSSSVKLAHHDPSKMVCVFPDASLRFWGAIVTQVPMNQL--SLSIDSQDHEPLAFLSGPFRGSQMAWSIIEKEAFSIVETCKRMDFLLLRPNGFKLYTDHRNLTFLYDPHSCSRDIARYTAEKVQRWGLVMMGFNYTIHHIDGEDNVWADLLSRWGA 515 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23263.6267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23263.6267.1 >prot_H-paniculata_contig23263.6267.1 ID=prot_H-paniculata_contig23263.6267.1|Name=mRNA_H-paniculata_contig23263.6267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp MRTALPALELTIAPLRELMKLHMWGTSRTKCVAARKTGKRREAWGDVRNRback to top mRNA from alignment at H-paniculata_contig23263:2590..4010+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23263.6267.1 ID=mRNA_H-paniculata_contig23263.6267.1|Name=mRNA_H-paniculata_contig23263.6267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1421bp|location=Sequence derived from alignment at H-paniculata_contig23263:2590..4010+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23263:2590..4010+ >mRNA_H-paniculata_contig23263.6267.1 ID=mRNA_H-paniculata_contig23263.6267.1|Name=mRNA_H-paniculata_contig23263.6267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig23263:2590..4010+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |