prot_H-paniculata_contig23260.6266.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig23260.6266.1
Unique Nameprot_H-paniculata_contig23260.6266.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length94
Homology
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 9.330e-36
Identity = 59/94 (62.77%), Postives = 76/94 (80.85%), Query Frame = 0
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 94
            LWIP    ALQ R MVCAH++E GHRG  AT+ RL+ YC W RME +V +FV+QCLHC+DS++G +VPRPLGE +HGT+ GEV+HFD+L++GAS
Sbjct: 1283 LWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGAS 1376          
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 6.220e-34
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 0
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 94
            LWIP     +Q R M+CAH++E GHRGV AT++RL  YC W  M+ +V EFVQQCLHC+DS+SG  VPRP GE +HG + GEVLHFD+LH+G S
Sbjct:  405 LWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKS 498          
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 7.220e-34
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 0
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 94
            LWIP     +Q R M+CAH++E GHRGV AT++RL  YC W  M+ +V EFVQQCLHC+DS+SG  VPRP GE +HG + GEVLHFD+LH+G S
Sbjct: 1181 LWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKS 1274          
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR)

HSP 1 Score: 89.4 bits (220), Expect = 9.330e-19
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 0
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLG 92
            +WIP+ +  LQ   MVC+H    GHRG+DAT + +     W  ++ +V   V+ C HC+ +R+G  VPRPLG  +HG +  EV+H DFL++G
Sbjct:  276 IWIPQQDLELQLSIMVCSHCGSIGHRGMDATGSVIRENFWWSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMG 367          
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A2P4WY00_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WY00_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.560e-18
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 0
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 94
            +WIP    +LQ R  +  H    GHRG+D T+  ++    W  +  +V  FV++CLHC+    G  +PRPLGE +H  +  E++H+D+L++GAS
Sbjct: 1279 IWIPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLYMGAS 1372          
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A329S5W2_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S5W2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.730e-18
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 0
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 94
            +WIP    +LQ R  +  H+   GHRG++ T+  L     W+ + A+   FV+ CLHC+    G  VPRPLGE +H  +  E++H+D+L++GAS
Sbjct:  374 VWIPPAAASLQLRICIVGHVSVAGHRGLETTLAALQQRFWWNDLPADATYFVRHCLHCMSVVGGPPVPRPLGEAMHADRPNELIHWDYLYMGAS 467          
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6A4FJL8_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FJL8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.370e-16
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 0
Query:    3 IPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 94
            IP    +LQ R  +  H    GHRG+D T+  ++    W  +  +V  FV++CLHC+    G  +PRPLGE +H  +  E++H+D+L +GAS
Sbjct:  334 IPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGAS 425          
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6A3N928_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N928_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.500e-16
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 0
Query:    3 IPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 94
            IP    +LQ R  +  H    GHRG+D T+  ++    W  +  +V  FV++CLHC+    G  +PRPLGE +H  +  E++H+D+L +GAS
Sbjct:  612 IPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGAS 703          
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6G0QZJ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QZJ3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.600e-15
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 0
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFL 89
            ++IP +   LQ R  V AH    GHRG  AT   L     W  + A+VA FV  CLHC+ + SG R+PRP GE L  T+  E+LHFD+L
Sbjct:  400 VYIPDDAADLQQRLCVVAHAGASGHRGGRATQQALEAVFYWSSLGADVAAFVNGCLHCMTTASG-RIPRPFGETLVSTKPNELLHFDYL 487          
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6A3I3R6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3I3R6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.660e-15
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 0
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFL 89
            ++IP +   LQ R  V AH    GHRG  AT   L     W  + A+VA FV  CLHC+ + SG R+PRP GE L  T+  E+LHFD+L
Sbjct:  573 VYIPDDAADLQQRLCVVAHAGASGHRGGRATQQALEAVFYWSSLGADVAAFVNGCLHCMTTASG-RIPRPFGETLVATKPNELLHFDYL 660          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE9.330e-3662.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE6.220e-3460.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE7.220e-3460.64Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
R7Q542_CHOCR9.330e-1942.39Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2P4WY00_9STRA4.560e-1838.30Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A329S5W2_9STRA5.730e-1839.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4FJL8_9STRA6.370e-1638.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3N928_9STRA6.500e-1638.04Integrase catalytic domain-containing protein n=2 ... [more]
A0A6G0QZJ3_9STRA1.600e-1546.07Reverse transcriptase domain-containing protein n=... [more]
A0A6A3I3R6_9STRA1.660e-1546.07Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 8..61
e-value: 2.5E-11
score: 43.5
NoneNo IPR availableGENE3D1.10.340.70coord: 2..62
e-value: 1.9E-8
score: 36.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23260contigH-paniculata_contig23260:110..391 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23260.6266.1mRNA_H-paniculata_contig23260.6266.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig23260 110..391 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig23260.6266.1 ID=prot_H-paniculata_contig23260.6266.1|Name=mRNA_H-paniculata_contig23260.6266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAE
FVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041588Integrase_H2C2