mRNA_H-paniculata_contig23260.6266.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23260.6266.1
Unique NamemRNA_H-paniculata_contig23260.6266.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 9.330e-36
Identity = 59/94 (62.77%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 282
            LWIP    ALQ R MVCAH++E GHRG  AT+ RL+ YC W RME +V +FV+QCLHC+DS++G +VPRPLGE +HGT+ GEV+HFD+L++GAS
Sbjct: 1283 LWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGAS 1376
[Close]
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 6.220e-34
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 282
            LWIP     +Q R M+CAH++E GHRGV AT++RL  YC W  M+ +V EFVQQCLHC+DS+SG  VPRP GE +HG + GEVLHFD+LH+G S
Sbjct:  405 LWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKS 498
[Close]
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 7.220e-34
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 282
            LWIP     +Q R M+CAH++E GHRGV AT++RL  YC W  M+ +V EFVQQCLHC+DS+SG  VPRP GE +HG + GEVLHFD+LH+G S
Sbjct: 1181 LWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKS 1274
[Close]
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: R7Q542_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q542_CHOCR)

HSP 1 Score: 89.4 bits (220), Expect = 9.330e-19
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLG 276
            +WIP+ +  LQ   MVC+H    GHRG+DAT + +     W  ++ +V   V+ C HC+ +R+G  VPRPLG  +HG +  EV+H DFL++G
Sbjct:  276 IWIPQQDLELQLSIMVCSHCGSIGHRGMDATGSVIRENFWWSSLDQDVKALVRGCYHCIVTRTGEVVPRPLGHAIHGDRPNEVVHMDFLYMG 367
[Close]
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A2P4WY00_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WY00_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.560e-18
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 282
            +WIP    +LQ R  +  H    GHRG+D T+  ++    W  +  +V  FV++CLHC+    G  +PRPLGE +H  +  E++H+D+L++GAS
Sbjct: 1279 IWIPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLYMGAS 1372
[Close]
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A329S5W2_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S5W2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 5.730e-18
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 282
            +WIP    +LQ R  +  H+   GHRG++ T+  L     W+ + A+   FV+ CLHC+    G  VPRPLGE +H  +  E++H+D+L++GAS
Sbjct:  374 VWIPPAAASLQLRICIVGHVSVAGHRGLETTLAALQQRFWWNDLPADATYFVRHCLHCMSVVGGPPVPRPLGEAMHADRPNELIHWDYLYMGAS 467
[Close]
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6A4FJL8_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FJL8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.370e-16
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:    7 IPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 282
            IP    +LQ R  +  H    GHRG+D T+  ++    W  +  +V  FV++CLHC+    G  +PRPLGE +H  +  E++H+D+L +GAS
Sbjct:  334 IPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGAS 425
[Close]
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6A3N928_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N928_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.500e-16
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:    7 IPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS 282
            IP    +LQ R  +  H    GHRG+D T+  ++    W  +  +V  FV++CLHC+    G  +PRPLGE +H  +  E++H+D+L +GAS
Sbjct:  612 IPAEAGSLQLRICIVGHFGVAGHRGLDTTLGAISKRFWWTDLATDVEYFVRRCLHCVSVVGGPPIPRPLGEAMHAERPNELIHWDYLFMGAS 703
[Close]
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6G0QZJ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QZJ3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.600e-15
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFL 267
            ++IP +   LQ R  V AH    GHRG  AT   L     W  + A+VA FV  CLHC+ + SG R+PRP GE L  T+  E+LHFD+L
Sbjct:  400 VYIPDDAADLQQRLCVVAHAGASGHRGGRATQQALEAVFYWSSLGADVAAFVNGCLHCMTTASG-RIPRPFGETLVSTKPNELLHFDYL 487
[Close]
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Match: A0A6A3I3R6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3I3R6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.660e-15
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAEFVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFL 267
            ++IP +   LQ R  V AH    GHRG  AT   L     W  + A+VA FV  CLHC+ + SG R+PRP GE L  T+  E+LHFD+L
Sbjct:  573 VYIPDDAADLQQRLCVVAHAGASGHRGGRATQQALEAVFYWSSLGADVAAFVNGCLHCMTTASG-RIPRPFGETLVATKPNELLHFDYL 660
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23260.6266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE9.330e-3662.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE6.220e-3460.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L7F6_9PHAE7.220e-3460.64Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
R7Q542_CHOCR9.330e-1942.39Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2P4WY00_9STRA4.560e-1838.30Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A329S5W2_9STRA5.730e-1839.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4FJL8_9STRA6.370e-1638.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3N928_9STRA6.500e-1638.04Integrase catalytic domain-containing protein n=2 ... [more]
A0A6G0QZJ3_9STRA1.600e-1546.07Reverse transcriptase domain-containing protein n=... [more]
A0A6A3I3R6_9STRA1.660e-1546.07Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23260contigH-paniculata_contig23260:110..391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.2e-15
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.9075532-CDS-H-paniculata_contig23260:109..3911622929657.9075532-CDS-H-paniculata_contig23260:109..391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23260 110..391 -
1691480954.4777286-CDS-H-paniculata_contig23260:109..3911691480954.4777286-CDS-H-paniculata_contig23260:109..391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23260 110..391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23260.6266.1prot_H-paniculata_contig23260.6266.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23260 110..391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23260.6266.1

>prot_H-paniculata_contig23260.6266.1 ID=prot_H-paniculata_contig23260.6266.1|Name=mRNA_H-paniculata_contig23260.6266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
LWIPRNEHALQARFMVCAHIQEGGHRGVDATVNRLAVYCVWDRMEANVAE
FVQQCLHCLDSRSGLRVPRPLGELLHGTQVGEVLHFDFLHLGAS
back to top

mRNA from alignment at H-paniculata_contig23260:110..391-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23260.6266.1 ID=mRNA_H-paniculata_contig23260.6266.1|Name=mRNA_H-paniculata_contig23260.6266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=282bp|location=Sequence derived from alignment at H-paniculata_contig23260:110..391- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGGATTCCCCGCAACGAGCACGCGCTGCAGGCGAGGTTCATGGTATG
CGCCCACATACAGGAGGGGGGCCACCGGGGCGTGGACGCTACGGTTAACC
GCCTTGCGGTATACTGTGTGTGGGACCGGATGGAGGCGAACGTGGCGGAG
TTTGTCCAGCAGTGCTTGCACTGTTTGGATTCCAGGTCAGGGTTGCGGGT
ACCCCGCCCGTTAGGCGAGCTGTTGCACGGCACGCAGGTGGGGGAGGTAC
TTCACTTCGACTTCCTGCATCTGGGCGCGAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23260:110..391-

>mRNA_H-paniculata_contig23260.6266.1 ID=mRNA_H-paniculata_contig23260.6266.1|Name=mRNA_H-paniculata_contig23260.6266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig23260:110..391- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGGATTCCCCGCAACGAGCACGCGCTGCAGGCGAGGTTCATGGTATG
CGCCCACATACAGGAGGGGGGCCACCGGGGCGTGGACGCTACGGTTAACC
GCCTTGCGGTATACTGTGTGTGGGACCGGATGGAGGCGAACGTGGCGGAG
TTTGTCCAGCAGTGCTTGCACTGTTTGGATTCCAGGTCAGGGTTGCGGGT
ACCCCGCCCGTTAGGCGAGCTGTTGCACGGCACGCAGGTGGGGGAGGTAC
TTCACTTCGACTTCCTGCATCTGGGCGCGAGCCTGTGGATTCCCCGCAAC
GAGCACGCGCTGCAGGCGAGGTTCATGGTATGCGCCCACATACAGGAGGG
GGGCCACCGGGGCGTGGACGCTACGGTTAACCGCCTTGCGGTATACTGTG
TGTGGGACCGGATGGAGGCGAACGTGGCGGAGTTTGTCCAGCAGTGCTTG
CACTGTTTGGATTCCAGGTCAGGGTTGCGGGTACCCCGCCCGTTAGGCGA
GCTGTTGCACGGCACGCAGGTGGGGGAGGTACTTCACTTCGACTTCCTGC
ATCTGGGCGCGAGC
back to top