mRNA_H-paniculata_contig23254.6264.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23254.6264.1
Unique NamemRNA_H-paniculata_contig23254.6264.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23254.6264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23254contigH-paniculata_contig23254:2516..3211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size697
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.6608145-CDS-H-paniculata_contig23254:2515..28661622929657.6608145-CDS-H-paniculata_contig23254:2515..2866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23254 2516..2866 +
1691480954.3553607-CDS-H-paniculata_contig23254:2515..28661691480954.3553607-CDS-H-paniculata_contig23254:2515..2866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23254 2516..2866 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.6806757-UTR-H-paniculata_contig23254:2866..32111622929657.6806757-UTR-H-paniculata_contig23254:2866..3211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23254 2867..3211 +
1691480954.3646529-UTR-H-paniculata_contig23254:2866..32111691480954.3646529-UTR-H-paniculata_contig23254:2866..3211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23254 2867..3211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23254.6264.1prot_H-paniculata_contig23254.6264.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23254 2516..2866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23254.6264.1

>prot_H-paniculata_contig23254.6264.1 ID=prot_H-paniculata_contig23254.6264.1|Name=mRNA_H-paniculata_contig23254.6264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
SENPRITGSKYSYFTKTSKRILTIIYSAPAVYNPQNNSRVKHQEKQATVA
NKNLKYNIGKRTAPVIFQSTNFIIKSNCIVKAIDHGKRHTYQYYNALLTH
APRSSVGWHTETFSLA*
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mRNA from alignment at H-paniculata_contig23254:2516..3211+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23254.6264.1 ID=mRNA_H-paniculata_contig23254.6264.1|Name=mRNA_H-paniculata_contig23254.6264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=696bp|location=Sequence derived from alignment at H-paniculata_contig23254:2516..3211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGAAAACCCGCGGATTACGGGAAGCAAATATTCTTATTTCACAAAAAC
ATCCAAACGTATCCTGACAATAATCTATAGCGCCCCTGCTGTGTACAACC
CCCAAAATAACTCAAGAGTAAAGCACCAAGAAAAGCAGGCAACCGTTGCC
AATAAAAACCTCAAGTACAATATTGGAAAACGAACGGCCCCCGTGATCTT
TCAATCCACCAATTTCATCATTAAATCAAATTGCATTGTAAAAGCGATAG
ACCATGGCAAGAGACATACATACCAGTACTACAATGCCCTACTCACCCAT
GCCCCGAGAAGTAGCGTGGGGTGGCATACTGAAACATTCTCCCTCGCATG
ACAAAAACATAACCATATCCGCCAAAATGCATCTACCAGACAAACCAAGA
AAAACTTGAAACCCAATTATCATCAAACCATATTCATTCATCAAGTCTCC
CAAGGATAGATTCTCCTCGTCCTGTCCAACCTTTGCAAACAGTTATCCCC
AAAACTAAAAGGAAAGATTTTCGAATACTTCCCAACTAATACTGTTTTCA
ATCAAATCCCATCACTTCACAACAAACCCATATTCATGTTAAAACTCAAC
TCATATCCATTGTATAGTTCGAACGAATCAATCCTCAAAGCCTTCGTTAA
AATATCAGCATGCTGGTACTCAGAAGATACATGCTTCACTGAAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig23254:2516..3211+

>mRNA_H-paniculata_contig23254.6264.1 ID=mRNA_H-paniculata_contig23254.6264.1|Name=mRNA_H-paniculata_contig23254.6264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig23254:2516..3211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGAAAACCCGCGGATTACGGGAAGCAAATATTCTTATTTCACAAAAAC
ATCCAAACGTATCCTGACAATAATCTATAGCGCCCCTGCTGTGTACAACC
CCCAAAATAACTCAAGAGTAAAGCACCAAGAAAAGCAGGCAACCGTTGCC
AATAAAAACCTCAAGTACAATATTGGAAAACGAACGGCCCCCGTGATCTT
TCAATCCACCAATTTCATCATTAAATCAAATTGCATTGTAAAAGCGATAG
ACCATGGCAAGAGACATACATACCAGTACTACAATGCCCTACTCACCCAT
GCCCCGAGAAGTAGCGTGGGGTGGCATACTGAAACATTCTCCCTCGCATG
ATCGGAAAACCCGCGGATTACGGGAAGCAAATATTCTTATTTCACAAAAA
CATCCAAACGTATCCTGACAATAATCTATAGCGCCCCTGCTGTGTACAAC
CCCCAAAATAACTCAAGAGTAAAGCACCAAGAAAAGCAGGCAACCGTTGC
CAATAAAAACCTCAAGTACAATATTGGAAAACGAACGGCCCCCGTGATCT
TTCAATCCACCAATTTCATCATTAAATCAAATTGCATTGTAAAAGCGATA
GACCATGGCAAGAGACATACATACCAGTACTACAATGCCCTACTCACCCA
TGCCCCGAGAAGTAGCGTGGGGTGGCATACTGAAACATTCTCCCTCGCAT
GA
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