mRNA_H-paniculata_contig2325.6262.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2325.6262.1
Unique NamemRNA_H-paniculata_contig2325.6262.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2325.6262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2325contigH-paniculata_contig2325:4313..4842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size530
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.4985712-CDS-H-paniculata_contig2325:4312..46331622929657.4985712-CDS-H-paniculata_contig2325:4312..4633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2325 4313..4633 +
1691480954.2838597-CDS-H-paniculata_contig2325:4312..46331691480954.2838597-CDS-H-paniculata_contig2325:4312..4633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2325 4313..4633 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929657.509755-UTR-H-paniculata_contig2325:4633..48421622929657.509755-UTR-H-paniculata_contig2325:4633..4842Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2325 4634..4842 +
1691480954.292751-UTR-H-paniculata_contig2325:4633..48421691480954.292751-UTR-H-paniculata_contig2325:4633..4842Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2325 4634..4842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2325.6262.1prot_H-paniculata_contig2325.6262.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2325 4313..4633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2325.6262.1

>prot_H-paniculata_contig2325.6262.1 ID=prot_H-paniculata_contig2325.6262.1|Name=mRNA_H-paniculata_contig2325.6262.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MNHPHRHIACWGYTNDNSTALVHPATQSETPSESTIYRRGPQRTAGDLHC
QSTHYPSPSKTVIGLSAHHIVRYILSPAAVYPSKKRLLYVQSLITLLDVC
VLILHL*
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mRNA from alignment at H-paniculata_contig2325:4313..4842+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2325.6262.1 ID=mRNA_H-paniculata_contig2325.6262.1|Name=mRNA_H-paniculata_contig2325.6262.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=530bp|location=Sequence derived from alignment at H-paniculata_contig2325:4313..4842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCACCCCCATAGGCACATTGCATGTTGGGGATACACGAACGACAA
TAGCACAGCATTAGTCCACCCCGCGACCCAGTCGGAAACGCCCTCAGAAT
CGACCATATACCGCAGAGGACCACAACGGACAGCAGGAGATCTTCACTGC
CAAAGCACGCACTACCCATCACCATCAAAAACAGTCATTGGCCTATCTGC
TCATCATATCGTACGATACATTTTGTCACCCGCCGCCGTCTATCCTTCGA
AAAAACGCTTATTGTACGTTCAGTCGCTGATAACCCTCTTGGATGTATGC
GTTCTAATTCTTCATCTCTGACCCGTTTGCCGTTATTGTGGGTATTATGC
AAAGAGTAATGAACTTGATCGTGCAGCAGCTCACGCGTTACGGCGGTTTC
CAGCGATTGAGTGTCAGCAAACTTTTGCCCTACCTCTACCAGCACAAACT
CGATCATGGTACCTAACTTCTACTTTCCTTCAAGGTAAAAGCTGTGCTGA
TAGTCGGTCATGGGGGTATTTTTGACTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2325:4313..4842+

>mRNA_H-paniculata_contig2325.6262.1 ID=mRNA_H-paniculata_contig2325.6262.1|Name=mRNA_H-paniculata_contig2325.6262.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig2325:4313..4842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCACCCCCATAGGCACATTGCATGTTGGGGATACACGAACGACAA
TAGCACAGCATTAGTCCACCCCGCGACCCAGTCGGAAACGCCCTCAGAAT
CGACCATATACCGCAGAGGACCACAACGGACAGCAGGAGATCTTCACTGC
CAAAGCACGCACTACCCATCACCATCAAAAACAGTCATTGGCCTATCTGC
TCATCATATCGTACGATACATTTTGTCACCCGCCGCCGTCTATCCTTCGA
AAAAACGCTTATTGTACGTTCAGTCGCTGATAACCCTCTTGGATGTATGC
GTTCTAATTCTTCATCTCTGAATGAATCACCCCCATAGGCACATTGCATG
TTGGGGATACACGAACGACAATAGCACAGCATTAGTCCACCCCGCGACCC
AGTCGGAAACGCCCTCAGAATCGACCATATACCGCAGAGGACCACAACGG
ACAGCAGGAGATCTTCACTGCCAAAGCACGCACTACCCATCACCATCAAA
AACAGTCATTGGCCTATCTGCTCATCATATCGTACGATACATTTTGTCAC
CCGCCGCCGTCTATCCTTCGAAAAAACGCTTATTGTACGTTCAGTCGCTG
ATAACCCTCTTGGATGTATGCGTTCTAATTCTTCATCTCTGA
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