prot_H-paniculata_contig2324.6260.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2324.6260.1
Unique Nameprot_H-paniculata_contig2324.6260.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length168
Homology
BLAST of mRNA_H-paniculata_contig2324.6260.1 vs. uniprot
Match: D7G008_ECTSI (Sup35, eukaryotic translation termination factor eRF3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G008_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 3.870e-82
Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 0
Query:   19 RVKSAKPGENVTVKIGCSDSDVMKGFVLCSKALPCHAATLFVAQVALVELTEQRPIFTAGYDAMCHCHTCEEECTVVEILSVMDRRTQVKRKQRFAKEGAMVTAKFKVDRSMCMESFDEMAHLGRFTLRTEGKTIAIGKILAVHKGTS 166
            RVKSAKPGENVTVK+ CSDSDVM+GFVLCS   PCHAATLFVAQ+ALVELTEQRPIFTAGYDAMCHCHTCEEECTVVEILSV+DR+T  K++QRFAKEGAMVTAKFKVDRSMCMESF+EM HLGRFTLRTEGKTIAIGKILAV K  S
Sbjct:  521 RVKSAKPGENVTVKVVCSDSDVMRGFVLCSTVQPCHAATLFVAQIALVELTEQRPIFTAGYDAMCHCHTCEEECTVVEILSVVDRKTGAKKRQRFAKEGAMVTAKFKVDRSMCMESFEEMPHLGRFTLRTEGKTIAIGKILAVQKPVS 668          
BLAST of mRNA_H-paniculata_contig2324.6260.1 vs. uniprot
Match: A0A835YYC4_9STRA (Sup35, eukaryotic translation termination factor eRF3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC4_9STRA)

HSP 1 Score: 187 bits (474), Expect = 6.480e-53
Identity = 88/142 (61.97%), Postives = 118/142 (83.10%), Query Frame = 0
Query:   19 RVKSAKPGENVTVKIGCSDSDVMKGFVLCSKALPCHAATLFVAQVALVELTEQRPIFTAGYDAMCHCHTCEEECTVVEILSVMDRRT-QVKRKQRFAKEGAMVTAKFKVDRSMCMESFDEMAHLGRFTLRTEGKTIAIGKIL 159
            RV SAK GENV++K+ C+++DV KGFV+C +A PCHA+   +AQ+ALVELTEQRPIF++GY+A+ HCHT EEEC V++++S  D++T +V R+ RFAKEG +VTAK ++ RS+ +E +D+M  LGRFTLRTEGKTIAIGKIL
Sbjct:  494 RVSSAKTGENVSIKLACTEADVQKGFVVCDEARPCHASKTLLAQIALVELTEQRPIFSSGYEAIFHCHTAEEECAVIDLVSATDKKTGKVTRRPRFAKEGGVVTAKIRLARSVPVEKYDDMPQLGRFTLRTEGKTIAIGKIL 635          
BLAST of mRNA_H-paniculata_contig2324.6260.1 vs. uniprot
Match: A0A4D9DDX0_9STRA (Tr-type G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDX0_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.170e-43
Identity = 84/144 (58.33%), Postives = 106/144 (73.61%), Query Frame = 0
Query:   20 VKSAKPGENVTVKIGCSD-SDVMKGFVLCSKALPCHAATLFVAQVALVELTEQRPIFTAGYDAMCHCHTCEEECTVVEILSVMDRRTQ-VKRKQRFAKEGAMVTAKFKVDRSMCMESFDEMAHLGRFTLRTEGKTIAIGKILAV 161
            V+SAKPGENV VK+G +   DV KGFVLC+   PCHAAT F  Q+ALV+L E RPIF+ GY+ + H HT EEE TVVE+LS+  R+ + VKR+ RFA++G ++TA  +  R +C E+F E+  LGR TLR EGKTIAIGKIL V
Sbjct:  479 VRSAKPGENVKVKLGGAGVEDVQKGFVLCTAGKPCHAATRFECQLALVDLLEHRPIFSPGYNCVVHLHTAEEEVTVVELLSIESRKPEEVKRRPRFARQGNVITANLRTARKVCCEAFKEVPQLGRLTLRDEGKTIAIGKILKV 622          
BLAST of mRNA_H-paniculata_contig2324.6260.1 vs. uniprot
Match: A0A3R7ABG1_9STRA (GTP_EFTU_D3 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7ABG1_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.430e-39
Identity = 70/147 (47.62%), Postives = 102/147 (69.39%), Query Frame = 0
Query:   20 VKSAKPGENVTVKIGCSDSDVMKGFVL--CSKALPCHAATLFVAQVALVELTEQRPIFTAGYDAMCHCHTCEEECTVVEILSVMDRRT--QVKRKQRFAKEGAMVTAKFKVDRSMCMESFDEMAHLGRFTLRTEGKTIAIGKILAVH 162
            V++AKPGENVT+++ C   ++ KGFVL   ++A    + T  VAQ+A VE  E RP+ TAGY A+ HCHT  +ECT+ ++L  +D +T   +K+K  FAK G  V  + +VD+S+C+E+FD++  +GR TLR EGKTIA+GKIL + 
Sbjct:   34 VRTAKPGENVTMRLTCGLEEITKGFVLVGAAEADEAKSVTKLVAQIAFVEALEHRPLLTAGYKAILHCHTIAQECTITKLLRPIDPKTGEALKKKVMFAKAGQSVVVRLEVDQSICVETFDKLPQMGRLTLRDEGKTIAVGKILKLE 180          
BLAST of mRNA_H-paniculata_contig2324.6260.1 vs. uniprot
Match: A0A6H5KJT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT1_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 4.170e-38
Identity = 74/115 (64.35%), Postives = 79/115 (68.70%), Query Frame = 0
Query:   82 MCHCHTCEEECTVVEILSVMDRRTQVKRKQRFAKEGAMVTAKFK------------------------------VDRSMCMESFDEMAHLGRFTLRTEGKTIAIGKILAVHKGTS 166
            MCHCHTCEEECTVVEILSV+DR+T  K++QRFAKEGAMVTAKFK                              VDRSMCMESF+EM HLGRFTLRTEGKTIAIGKILAV K  S
Sbjct:    1 MCHCHTCEEECTVVEILSVVDRKTGAKKRQRFAKEGAMVTAKFKXXXXXXXXXXXXXXXKGKVRILDLLFYGNRVDRSMCMESFEEMPHLGRFTLRTEGKTIAIGKILAVQKPVS 115          
BLAST of mRNA_H-paniculata_contig2324.6260.1 vs. uniprot
Match: A0A397EV36_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EV36_9STRA)

HSP 1 Score: 140 bits (354), Expect = 6.230e-38
Identity = 70/147 (47.62%), Postives = 102/147 (69.39%), Query Frame = 0
Query:   20 VKSAKPGENVTVKIGCSDSDVMKGFVL--CSKALPCHAATLFVAQVALVELTEQRPIFTAGYDAMCHCHTCEEECTVVEILSVMDRRT--QVKRKQRFAKEGAMVTAKFKVDRSMCMESFDEMAHLGRFTLRTEGKTIAIGKILAVH 162
            V++AKPGENVT+++ C   ++ KGFVL   ++A    + T  VAQ+A VE  E RP+ TAGY A+ HCHT  +ECT+ ++L  +D +T   +K+K  FAK G  V  + +VD+S+C+E+FD++  +GR TLR EGKTIA+GKIL + 
Sbjct:  157 VRTAKPGENVTMRLTCGLEEITKGFVLVGAAEADEAKSVTKLVAQIAFVEALEHRPLLTAGYKAILHCHTIAQECTITKLLRPIDPKTGEALKKKVMFAKAGQSVVVRLEVDQSICVETFDKLPQMGRLTLRDEGKTIAVGKILKLE 303          
BLAST of mRNA_H-paniculata_contig2324.6260.1 vs. uniprot
Match: A0A7S2SH96_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SH96_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.170e-37
Identity = 70/142 (49.30%), Postives = 98/142 (69.01%), Query Frame = 0
Query:   20 VKSAKPGENVTVKIG--CSDSDVMKGFVLCSKALPCHAATLFVAQVALVELTEQRPIFTAGYDAMCHCHTCEEECTVVEILSVMDRRTQVKRKQRFAKEGAMVTAKFKVDRSMCMESFDEMAHLGRFTLRTEGKTIAIGKIL 159
            V SA+PGENV +K+G  C   DV+KG+V+CS   PC + +  + Q+AL+++ E   IFTAG+ AM H HTCEEECTVV++    + +  V +  RFA  G  +    ++DR++ +E++D+   LGRFTLRTEGKTIAIGKIL
Sbjct:  203 VSSARPGENVLIKLGGGCGTEDVLKGYVICSDP-PCRSVSKVICQIALMDMPENTRIFTAGFQAMFHSHTCEEECTVVKLFETTNAKGVVNKIPRFAHVGMKIICMIELDRTVPVETYDDYPFLGRFTLRTEGKTIAIGKIL 343          
BLAST of mRNA_H-paniculata_contig2324.6260.1 vs. uniprot
Match: A0A397AH49_9STRA (Tr-type G domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AH49_9STRA)

HSP 1 Score: 140 bits (354), Expect = 6.490e-37
Identity = 70/147 (47.62%), Postives = 102/147 (69.39%), Query Frame = 0
Query:   20 VKSAKPGENVTVKIGCSDSDVMKGFVL--CSKALPCHAATLFVAQVALVELTEQRPIFTAGYDAMCHCHTCEEECTVVEILSVMDRRT--QVKRKQRFAKEGAMVTAKFKVDRSMCMESFDEMAHLGRFTLRTEGKTIAIGKILAVH 162
            V++AKPGENVT+++ C   ++ KGFVL   ++A    + T  VAQ+A VE  E RP+ TAGY A+ HCHT  +ECT+ ++L  +D +T   +K+K  FAK G  V  + +VD+S+C+E+FD++  +GR TLR EGKTIA+GKIL + 
Sbjct:  274 VRTAKPGENVTMRLTCGLEEITKGFVLVGAAEADEAKSVTKLVAQIAFVEALEHRPLLTAGYKAILHCHTIAQECTITKLLRPIDPKTGEALKKKVMFAKAGQSVVVRLEVDQSICVETFDKLPQMGRLTLRDEGKTIAVGKILKLE 420          
BLAST of mRNA_H-paniculata_contig2324.6260.1 vs. uniprot
Match: Q40582_TOBAC (Eukaryotic peptide chain release factor GTP-binding subunit (Fragment) n=2 Tax=Solanaceae TaxID=4070 RepID=Q40582_TOBAC)

HSP 1 Score: 139 bits (349), Expect = 2.700e-36
Identity = 71/146 (48.63%), Postives = 102/146 (69.86%), Query Frame = 0
Query:   19 RVKSAKPGENVTVKI-GCSDSDVMKGFVLCSKALPCHAATLFVAQVALVELTEQRPIFTAGYDAMCHCHTCEEECTVVEILSVMDRRTQ--VKRKQRFAKEGAMVTAKFKVDRSMCMESFDEMAHLGRFTLRTEGKTIAIGKILAV 161
            +V+   PGENV V++ G  + D++ GFVLCS A P HA T FVAQ+ ++EL +   IFTAGY A+ H H+  EEC +VE++  +D +T+  +K+K  F K GA+V  + +V+  +C+E F + A LGRFTLRTEGKT+A+GKI A+
Sbjct:  258 KVRHVGPGENVRVRLSGVEEDDILSGFVLCSVAKPIHAVTEFVAQLQILELLDNA-IFTAGYKAVLHIHSVVEECEIVELMQQIDLKTKKPMKKKPLFVKNGAIVLCRVQVNNLICVEKFSDFAQLGRFTLRTEGKTVAVGKITAL 402          
BLAST of mRNA_H-paniculata_contig2324.6260.1 vs. uniprot
Match: A0A2P6VQI9_9CHLO (Elongation factor n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VQI9_9CHLO)

HSP 1 Score: 140 bits (352), Expect = 2.800e-36
Identity = 67/145 (46.21%), Postives = 101/145 (69.66%), Query Frame = 0
Query:   20 VKSAKPGENVTVKI-GCSDSDVMKGFVLCSKALPCHAATLFVAQVALVELTEQRPIFTAGYDAMCHCHTCEEECTVVEILSVMDRRTQVKRKQRFAKEGAMVTAKFKVDRSMCMESFDEMAHLGRFTLRTEGKTIAIGKILAVHK 163
            V +A+PGEN+ +++ G  + D+  GFV+ S+  P  A T F AQ+ ++EL + +P+ T GY A+ H H+  EEC VV +++V+D +T+ K+K +FAK GAM   +  VD+ +C+E+FD +  LGRFTLR EGKT+AIGK+L V K
Sbjct:  324 VAAARPGENLRLRLQGVEEEDISAGFVVSSRFNPVPAVTQFEAQLVILELLDHKPLLTGGYKAVLHIHSVVEECEVVRLVAVIDPKTKEKKKAKFAKSGAMCVVRIAVDKPICIEAFDSVPQLGRFTLRDEGKTLAIGKVLRVPK 468          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2324.6260.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G008_ECTSI3.870e-8287.84Sup35, eukaryotic translation termination factor e... [more]
A0A835YYC4_9STRA6.480e-5361.97Sup35, eukaryotic translation termination factor e... [more]
A0A4D9DDX0_9STRA1.170e-4358.33Tr-type G domain-containing protein n=2 Tax=Monodo... [more]
A0A3R7ABG1_9STRA2.430e-3947.62GTP_EFTU_D3 domain-containing protein n=1 Tax=Apha... [more]
A0A6H5KJT1_9PHAE4.170e-3864.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A397EV36_9STRA6.230e-3847.62Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S2SH96_9STRA1.170e-3749.30Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A397AH49_9STRA6.490e-3747.62Tr-type G domain-containing protein n=2 Tax=Aphano... [more]
Q40582_TOBAC2.700e-3648.63Eukaryotic peptide chain release factor GTP-bindin... [more]
A0A2P6VQI9_9CHLO2.800e-3646.21Elongation factor n=1 Tax=Micractinium conductrix ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004160Translation elongation factor EFTu/EF1A, C-terminalPFAMPF03143GTP_EFTU_D3coord: 53..161
e-value: 2.1E-26
score: 92.4
NoneNo IPR availableGENE3D2.40.30.10coord: 54..162
e-value: 1.3E-30
score: 107.8
NoneNo IPR availablePANTHERPTHR23115:SF36G1 TO S PHASE TRANSITION 1-RELATEDcoord: 19..163
NoneNo IPR availablePANTHERPTHR23115TRANSLATION FACTORcoord: 19..163
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..167
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.544
IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalSUPERFAMILY50465EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domaincoord: 57..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2324contigH-paniculata_contig2324:15314..17249 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2324.6260.1mRNA_H-paniculata_contig2324.6260.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2324 13701..19355 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2324.6260.1 ID=prot_H-paniculata_contig2324.6260.1|Name=mRNA_H-paniculata_contig2324.6260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
MFRFGYMRPILPLMLIVVRVKSAKPGENVTVKIGCSDSDVMKGFVLCSKA
LPCHAATLFVAQVALVELTEQRPIFTAGYDAMCHCHTCEEECTVVEILSV
MDRRTQVKRKQRFAKEGAMVTAKFKVDRSMCMESFDEMAHLGRFTLRTEG
KTIAIGKILAVHKGTST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004160Transl_elong_EFTu/EF1A_C
IPR009001Transl_elong_EF1A/Init_IF2_C