mRNA_H-paniculata_contig23229.6258.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23229.6258.1
Unique NamemRNA_H-paniculata_contig23229.6258.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23229.6258.1 vs. uniprot
Match: D8LJS6_ECTSI (Cystathionine gamma-lyase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJS6_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 9.520e-13
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 SPQAAFYILQNSKTLSLRFSQQCKTAQAVAEMLESHPKV 117
            SPQAAFYILQ+SKT+ LRF QQCKTAQAVAEMLESH KV
Sbjct:  248 SPQAAFYILQHSKTMGLRFRQQCKTAQAVAEMLESHEKV 286
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BLAST of mRNA_H-paniculata_contig23229.6258.1 vs. uniprot
Match: A0A836CFW8_9STRA (Cystathionine gamma-lyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.640e-10
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 SPQAAFYILQNSKTLSLRFSQQCKTAQAVAEMLESHPKVCCLYVEG 138
            SPQ +FY+LQ +KT+ LRF QQC TAQ VAE LE+HPKV  ++  G
Sbjct:  248 SPQCSFYVLQATKTMGLRFKQQCATAQKVAEFLETHPKVQTVHYPG 293
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BLAST of mRNA_H-paniculata_contig23229.6258.1 vs. uniprot
Match: A0A7S1Q2V1_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1Q2V1_NEODS)

HSP 1 Score: 53.9 bits (128), Expect = 3.720e-7
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 SPQAAFYILQNSKTLSLRFSQQCKTAQAVAEMLESHPKV 117
            SPQ AFY LQ +KTL LR  QQ   AQA+AE LE+HPKV
Sbjct:  259 SPQVAFYQLQTAKTLPLRIRQQSNNAQAIAEFLETHPKV 297
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BLAST of mRNA_H-paniculata_contig23229.6258.1 vs. uniprot
Match: A0A1S3Y2Y7_TOBAC (cystathionine gamma-synthase 1, chloroplastic-like n=6 Tax=Nicotiana TaxID=4085 RepID=A0A1S3Y2Y7_TOBAC)

HSP 1 Score: 53.9 bits (128), Expect = 3.730e-7
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 SPQAAFYILQNSKTLSLRFSQQCKTAQAVAEMLESHPKVCCLYVEG 138
            +P AA+ I++  KTL LR  QQ  TAQ +AE+LE+HPKV C+Y  G
Sbjct:  305 NPNAAYLIIRGMKTLHLRVQQQNSTAQRIAEILEAHPKVRCVYYPG 350
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BLAST of mRNA_H-paniculata_contig23229.6258.1 vs. uniprot
Match: W8R7K4_TOBAC (Cystathionine gamma synthase n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=W8R7K4_TOBAC)

HSP 1 Score: 53.9 bits (128), Expect = 3.730e-7
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 SPQAAFYILQNSKTLSLRFSQQCKTAQAVAEMLESHPKVCCLYVEG 138
            +P AA+ I++  KTL LR  QQ  TAQ +AE+LE+HPKV C+Y  G
Sbjct:  378 NPNAAYLIIRGMKTLHLRVQQQNSTAQRIAEILEAHPKVRCVYYPG 423
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BLAST of mRNA_H-paniculata_contig23229.6258.1 vs. uniprot
Match: Q9MT29_SOLTU (Cystathionine gamma-synthase isoform 2 n=6 Tax=Solanoideae TaxID=424551 RepID=Q9MT29_SOLTU)

HSP 1 Score: 53.9 bits (128), Expect = 3.730e-7
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 SPQAAFYILQNSKTLSLRFSQQCKTAQAVAEMLESHPKVCCLYVEG 138
            +P AA+ I++  KTL LR  QQ  TAQ +AE+LE+HPKV C+Y  G
Sbjct:  391 NPNAAYLIIRGMKTLHLRVQQQNSTAQRIAEILEAHPKVRCVYYPG 436
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BLAST of mRNA_H-paniculata_contig23229.6258.1 vs. uniprot
Match: A0A4D9BBN9_SALSN (Cystathionine gamma-synthase n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9BBN9_SALSN)

HSP 1 Score: 52.8 bits (125), Expect = 9.540e-7
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 SPQAAFYILQNSKTLSLRFSQQCKTAQAVAEMLESHPKVCCLYVEG 138
            +P AA+ I++  KTL LR  QQ  TAQ +AE+LE+HPK+ C+Y  G
Sbjct:  390 NPNAAYLIIRGMKTLHLRVQQQNSTAQRMAEILEAHPKIRCVYYPG 435
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BLAST of mRNA_H-paniculata_contig23229.6258.1 vs. uniprot
Match: A0A7S3SGD3_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SGD3_9SPIT)

HSP 1 Score: 52.0 bits (123), Expect = 1.320e-6
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SPQAAFYILQNSKTLSLRFSQQCKTAQAVAEMLESHPKV 117
            +P AAF ILQ +KT+ LR  QQ KTA A++E LESHPKV
Sbjct:   78 NPFAAFIILQTTKTMGLRVRQQSKTAMAISEFLESHPKV 116
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BLAST of mRNA_H-paniculata_contig23229.6258.1 vs. uniprot
Match: A0A1D3D3C7_9EIME (uncharacterized protein LOC34617715 n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A1D3D3C7_9EIME)

HSP 1 Score: 51.2 bits (121), Expect = 3.340e-6
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 PQAAFYILQNSKTLSLRFSQQCKTAQAVAEMLESHPKV 117
            PQ AFY L +S TL LRF +Q +TA+AVAE L+ HPKV
Sbjct:  276 PQTAFYTLNSSMTLPLRFKRQSETAKAVAEFLQQHPKV 313
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BLAST of mRNA_H-paniculata_contig23229.6258.1 vs. uniprot
Match: A0A067JTE4_JATCU (Uncharacterized protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JTE4_JATCU)

HSP 1 Score: 51.2 bits (121), Expect = 3.340e-6
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 SPQAAFYILQNSKTLSLRFSQQCKTAQAVAEMLESHPKVCCLYVEG 138
            +P AA+ I++  KTL LR  QQ  TA  +AE+LE+HPKV C+Y  G
Sbjct:  391 NPNAAYLIIRGMKTLHLRVQQQNSTAMRMAEVLEAHPKVRCVYYPG 436
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23229.6258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LJS6_ECTSI9.520e-1387.18Cystathionine gamma-lyase n=2 Tax=Ectocarpus TaxID... [more]
A0A836CFW8_9STRA9.640e-1060.87Cystathionine gamma-lyase n=1 Tax=Tribonema minus ... [more]
A0A7S1Q2V1_NEODS3.720e-766.67Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A1S3Y2Y7_TOBAC3.730e-754.35cystathionine gamma-synthase 1, chloroplastic-like... [more]
W8R7K4_TOBAC3.730e-754.35Cystathionine gamma synthase n=1 Tax=Nicotiana tab... [more]
Q9MT29_SOLTU3.730e-754.35Cystathionine gamma-synthase isoform 2 n=6 Tax=Sol... [more]
A0A4D9BBN9_SALSN9.540e-752.17Cystathionine gamma-synthase n=2 Tax=Salvia splend... [more]
A0A7S3SGD3_9SPIT1.320e-664.10Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A1D3D3C7_9EIME3.340e-663.16uncharacterized protein LOC34617715 n=1 Tax=Cyclos... [more]
A0A067JTE4_JATCU3.340e-652.17Uncharacterized protein n=1 Tax=Jatropha curcas Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23229contigH-paniculata_contig23229:3582..3719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue4e-10
Seed eggNOG ortholog2880.D8LJS6
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.cystathionine gamma-synthase activity
EggNOG OGsCOG0626@1,KOG0053@2759
Ec32 ortholog descriptionCystathionine gamma-lyase
Ec32 orthologEc-12_003100.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.9712317-CDS-H-paniculata_contig23229:3581..37191622929656.9712317-CDS-H-paniculata_contig23229:3581..3719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23229 3582..3719 +
1691480954.1040096-CDS-H-paniculata_contig23229:3581..37191691480954.1040096-CDS-H-paniculata_contig23229:3581..3719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23229 3582..3719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23229.6258.1prot_H-paniculata_contig23229.6258.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23229 3582..3719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23229.6258.1

>prot_H-paniculata_contig23229.6258.1 ID=prot_H-paniculata_contig23229.6258.1|Name=mRNA_H-paniculata_contig23229.6258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
SPQAAFYILQNSKTLSLRFSQQCKTAQAVAEMLESHPKVCCLYVEG
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mRNA from alignment at H-paniculata_contig23229:3582..3719+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23229.6258.1 ID=mRNA_H-paniculata_contig23229.6258.1|Name=mRNA_H-paniculata_contig23229.6258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig23229:3582..3719+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCCGCAGGCGGCATTTTATATTTTGCAGAATAGCAAAACTCTGTCGCT
GCGCTTCAGTCAGCAGTGCAAGACGGCACAAGCCGTGGCCGAGATGCTGG
AGTCGCACCCCAAGGTGTGTTGTTTGTATGTTGAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig23229:3582..3719+

>mRNA_H-paniculata_contig23229.6258.1 ID=mRNA_H-paniculata_contig23229.6258.1|Name=mRNA_H-paniculata_contig23229.6258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig23229:3582..3719+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCCGCAGGCGGCATTTTATATTTTGCAGAATAGCAAAACTCTGTCGCT
GCGCTTCAGTCAGCAGTGCAAGACGGCACAAGCCGTGGCCGAGATGCTGG
AGTCGCACCCCAAGGTGTGTTGTTTGTATGTTGAGGGGAGCCCGCAGGCG
GCATTTTATATTTTGCAGAATAGCAAAACTCTGTCGCTGCGCTTCAGTCA
GCAGTGCAAGACGGCACAAGCCGTGGCCGAGATGCTGGAGTCGCACCCCA
AGGTGTGTTGTTTGTATGTTGAGGGG
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