mRNA_H-paniculata_contig23222.6254.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23222.6254.1
Unique NamemRNA_H-paniculata_contig23222.6254.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23222.6254.1 vs. uniprot
Match: D8LDU0_ECTSI (Radial spoke protein 10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDU0_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.580e-21
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   19 QVHATFDGTYVDGKKTGYGKMTYPNGDIYTGEWKDNTMEGQGTYVYKAT 165
            QVHAT++G Y DGKK G GKMTYPNGD YTGEWKDN MEG+GTYVYKAT
Sbjct:   73 QVHATYEGNYTDGKKAGTGKMTYPNGDEYTGEWKDNAMEGEGTYVYKAT 121
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BLAST of mRNA_H-paniculata_contig23222.6254.1 vs. uniprot
Match: A0A835Z6C0_9STRA (Radial spoke protein 10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.430e-15
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   22 VHATFDGTYVDGKKTGYGKMTYPNGDIYTGEWKDNTMEGQGTYVYKATS 168
            V AT++G+YVDG K G GKMTYPNGD Y GEWKDN   G+GTY YKA+S
Sbjct:   74 VLATYEGSYVDGAKCGTGKMTYPNGDTYWGEWKDNLHHGEGTYTYKASS 122
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BLAST of mRNA_H-paniculata_contig23222.6254.1 vs. uniprot
Match: A0A7S2RSU2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSU2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.010e-15
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   28 ATFDGTYVDGKKTGYGKMTYPNGDIYTGEWKDNTMEGQGTYVYKAT 165
            AT++G Y DGKK G GKMT+PNGD+Y GEWK+N MEG+GTY Y  T
Sbjct:   75 ATYEGNYADGKKHGIGKMTFPNGDVYHGEWKENKMEGEGTYTYAKT 120
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BLAST of mRNA_H-paniculata_contig23222.6254.1 vs. uniprot
Match: A0A662XNK4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNK4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.200e-11
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   16 VQVHATFDGTYVDGKKTGYGKMTYPNGDIYTGEWKDNTMEGQGTYVY 156
            V V AT++GTYV+G K+G GKMT+PNGD Y GEWK + M G G+ +Y
Sbjct:   65 VAVLATYEGTYVNGSKSGLGKMTFPNGDTYHGEWKADKMMGDGSLMY 111
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BLAST of mRNA_H-paniculata_contig23222.6254.1 vs. uniprot
Match: UPI001E400DEC (cell wall-binding repeat-containing protein n=1 Tax=Desulfosporosinus sp. SRJS8 TaxID=2885154 RepID=UPI001E400DEC)

HSP 1 Score: 57.4 bits (137), Expect = 1.280e-7
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   34 FDGTYVDGKKTGYGKMTYPNGDIYTGEWKDNTMEGQGTYVY 156
            + G  VDGKK G GK T+ NGD+Y+GEWK++ M G+G  VY
Sbjct:  353 YQGVLVDGKKEGQGKYTWANGDVYSGEWKNDKMNGRGVLVY 393
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BLAST of mRNA_H-paniculata_contig23222.6254.1 vs. uniprot
Match: A0A7S0EGL2_9CRYP (Hypothetical protein n=2 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EGL2_9CRYP)

HSP 1 Score: 53.1 bits (126), Expect = 2.890e-6
Identity = 21/45 (46.67%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   16 VQVHATFDGTYVDGKKTGYGKMTYPNGDIYTGEWKDNTMEGQGTY 150
            VQ  A +DG +  G++ GYGK T+ NGD Y G+W D+  EG G +
Sbjct:   45 VQEGARYDGAFKGGRRHGYGKFTWANGDTYEGDWSDDAQEGSGKF 89
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BLAST of mRNA_H-paniculata_contig23222.6254.1 vs. uniprot
Match: A0A1R2AT90_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AT90_9CILI)

HSP 1 Score: 53.1 bits (126), Expect = 4.080e-6
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   31 TFDGTYVDGKKTGYGKMTYPNGDIYTGEWKDNTMEGQGTYVY 156
            T+ G  + GK++G G++T  +G +YTGEWKD+ M GQG Y Y
Sbjct:   31 TYIGELIKGKRSGMGELTTESGHVYTGEWKDDLMSGQGIYKY 72
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BLAST of mRNA_H-paniculata_contig23222.6254.1 vs. uniprot
Match: A0A7S1ELM0_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1ELM0_HEMAN)

HSP 1 Score: 50.4 bits (119), Expect = 6.710e-6
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:   31 TFDGTYVDGKKTGYGKMTYPNGDIYTGEWKDNTMEGQGTYV 153
            T++G YVDGKK+GYG  T+ +   Y G W+D+ M GQG  V
Sbjct:    8 TYEGDYVDGKKSGYGVFTWKDQSRYEGGWEDDVMHGQGVRV 48
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BLAST of mRNA_H-paniculata_contig23222.6254.1 vs. uniprot
Match: A0A5D6YXM7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YXM7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.650e-5
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   16 VQVHATFDGTYVDGKKTGYGKMTYPNGDIYTGEWKDNTM 132
            ++V A+++G Y+DG K G GKM +PNGD Y GEW+ + M
Sbjct:   61 LKVVASYEGAYIDGAKQGLGKMVFPNGDTYHGEWQRDKM 99
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BLAST of mRNA_H-paniculata_contig23222.6254.1 vs. uniprot
Match: A0A7Z9W930_9BACT (MORN motif (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7Z9W930_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 1.850e-5
Identity = 18/40 (45.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   34 FDGTYVDGKKTGYGKMTYPNGDIYTGEWKDNTMEGQGTYV 153
            + G   DGK+ G+G  TYPNGD+Y GEW+++   G+G ++
Sbjct:   33 YTGAIADGKREGFGIYTYPNGDVYEGEWQNDRKNGKGIFI 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23222.6254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LDU0_ECTSI1.580e-2181.63Radial spoke protein 10 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z6C0_9STRA1.430e-1569.39Radial spoke protein 10 n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RSU2_9STRA4.010e-1567.39Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A662XNK4_9STRA8.200e-1159.57Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
UPI001E400DEC1.280e-756.10cell wall-binding repeat-containing protein n=1 Ta... [more]
A0A7S0EGL2_9CRYP2.890e-646.67Hypothetical protein n=2 Tax=Hanusia phi TaxID=303... [more]
A0A1R2AT90_9CILI4.080e-650.00Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A7S1ELM0_HEMAN6.710e-651.22Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A5D6YXM7_9STRA1.650e-551.28Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7Z9W930_9BACT1.850e-545.00MORN motif (Fragment) n=1 Tax=Candidatus Marinimic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23222contigH-paniculata_contig23222:3196..3781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue5e-17
Seed eggNOG ortholog2880.D8LDU0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.6808312-CDS-H-paniculata_contig23222:3195..33031622929656.6808312-CDS-H-paniculata_contig23222:3195..3303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23222 3196..3303 -
1691480953.9930668-CDS-H-paniculata_contig23222:3195..33031691480953.9930668-CDS-H-paniculata_contig23222:3195..3303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23222 3196..3303 -
1622929656.6952965-CDS-H-paniculata_contig23222:3622..37811622929656.6952965-CDS-H-paniculata_contig23222:3622..3781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23222 3623..3781 -
1691480954.0057456-CDS-H-paniculata_contig23222:3622..37811691480954.0057456-CDS-H-paniculata_contig23222:3622..3781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23222 3623..3781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23222.6254.1prot_H-paniculata_contig23222.6254.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23222 3196..3781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23222.6254.1

>prot_H-paniculata_contig23222.6254.1 ID=prot_H-paniculata_contig23222.6254.1|Name=mRNA_H-paniculata_contig23222.6254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
TLSSAVQVHATFDGTYVDGKKTGYGKMTYPNGDIYTGEWKDNTMEGQGTY
VYKATSDIYSGTWVGNKKIGQGMYQFGADDSTMRGTWVD
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mRNA from alignment at H-paniculata_contig23222:3196..3781-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23222.6254.1 ID=mRNA_H-paniculata_contig23222.6254.1|Name=mRNA_H-paniculata_contig23222.6254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=586bp|location=Sequence derived from alignment at H-paniculata_contig23222:3196..3781- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTTATCATCTGCGGTACAGGTTCACGCAACCTTCGACGGAACCTACGT
TGACGGAAAGAAAACTGGATACGGCAAGATGACTTACCCCAACGGAGACA
TCTACACCGGAGAATGGAAGGACAACACTATGGAGGGACAAGGGACTTAT
GTGTACAAGGTGCCTCCCCGTGACATGAACTGACAAGCACTTCCATTTAT
TCTTGAGAGCTATCCGTGTGCACCTCAAATAGTTTGACTGATTGTTGTGG
CAAATTGTGCCTTGTCCAGCGTTATAGGACAGTAGTCTGGTACACTCGTG
ACTAGCTGTTCTGTCAGATTACGAGGGTGAAGCAACCAATCTGTAGCGGG
GATGCTATACAGCAGGACCTCAGGGGTGCGTTACGTATGTAGTGTGTAGA
ACGCGCCTGACAACTGGTGGTTCGTTCTAACCCATCTCCTCTCCCTATCA
TTGTTACGCGACTCGTCTACTCATCTAGGCCACGAGCGATATTTACAGCG
GCACCTGGGTCGGCAATAAGAAAATCGGACAGGGCATGTACCAGTTCGGC
GCGGACGACAGTACAATGCGAGGGACATGGGTTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig23222:3196..3781-

>mRNA_H-paniculata_contig23222.6254.1 ID=mRNA_H-paniculata_contig23222.6254.1|Name=mRNA_H-paniculata_contig23222.6254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig23222:3196..3781- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTTATCATCTGCGGTACAGGTTCACGCAACCTTCGACGGAACCTACGT
TGACGGAAAGAAAACTGGATACGGCAAGATGACTTACCCCAACGGAGACA
TCTACACCGGAGAATGGAAGGACAACACTATGGAGGGACAAGGGACTTAT
GTGTACAAGACTTTATCATCTGCGGTACAGGTTCACGCAACCTTCGACGG
AACCTACGTTGACGGAAAGAAAACTGGATACGGCAAGATGACTTACCCCA
ACGGAGACATCTACACCGGAGAATGGAAGGACAACACTATGGAGGGACAA
GGGACTTATGTGTACAAGGCCACGAGCGATATTTACAGCGGCACCTGGGT
CGGCAATAAGAAAATCGGACAGGGCATGTACCAGTTCGGCGCGGACGACA
GTACAATGCGAGGGACATGGGTTGACGCCACGAGCGATATTTACAGCGGC
ACCTGGGTCGGCAATAAGAAAATCGGACAGGGCATGTACCAGTTCGGCGC
GGACGACAGTACAATGCGAGGGACATGGGTTGAC
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