prot_H-paniculata_contig23216.6251.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig23216.6251.1
Unique Nameprot_H-paniculata_contig23216.6251.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length134
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23216.6251.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 1..16
e-value: 13.0
score: 4.2
coord: 31..47
e-value: 0.0046
score: 25.6
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 32..47
e-value: 4.0E-4
score: 20.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 32..47
score: 8.862
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 1..14
score: 8.977
NoneNo IPR availableGENE3D4.10.60.10coord: 1..55
e-value: 5.1E-7
score: 31.3
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 19..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23216contigH-paniculata_contig23216:311..712 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23216.6251.1mRNA_H-paniculata_contig23216.6251.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig23216 311..712 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig23216.6251.1 ID=prot_H-paniculata_contig23216.6251.1|Name=mRNA_H-paniculata_contig23216.6251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
CSHCGKHGHRGEDCWGAEGDDRKETKKDRDLCWVCGSPEHTARRCPKRHH
DTNEGAIALMATVRGPKGMTVVTNDHKTTDNPTVTGEKEHWNSDTGAIDH
MTSDETAFEDYTPALPGTMCEIANGTFVPVEGWG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf