mRNA_H-paniculata_contig23216.6251.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23216.6251.1
Unique NamemRNA_H-paniculata_contig23216.6251.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23216.6251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23216contigH-paniculata_contig23216:311..712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.5021565-CDS-H-paniculata_contig23216:310..7121622929656.5021565-CDS-H-paniculata_contig23216:310..712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23216 311..712 -
1691480953.9103992-CDS-H-paniculata_contig23216:310..7121691480953.9103992-CDS-H-paniculata_contig23216:310..712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23216 311..712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23216.6251.1prot_H-paniculata_contig23216.6251.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23216 311..712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23216.6251.1

>prot_H-paniculata_contig23216.6251.1 ID=prot_H-paniculata_contig23216.6251.1|Name=mRNA_H-paniculata_contig23216.6251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
CSHCGKHGHRGEDCWGAEGDDRKETKKDRDLCWVCGSPEHTARRCPKRHH
DTNEGAIALMATVRGPKGMTVVTNDHKTTDNPTVTGEKEHWNSDTGAIDH
MTSDETAFEDYTPALPGTMCEIANGTFVPVEGWG
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mRNA from alignment at H-paniculata_contig23216:311..712-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23216.6251.1 ID=mRNA_H-paniculata_contig23216.6251.1|Name=mRNA_H-paniculata_contig23216.6251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at H-paniculata_contig23216:311..712- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAGCCACTGCGGGAAACATGGACATCGCGGTGAGGATTGCTGGGGCGC
CGAAGGGGACGATCGAAAGGAAACGAAAAAGGATCGAGACCTATGCTGGG
TGTGCGGTAGCCCAGAGCACACCGCAAGACGGTGCCCGAAACGCCACCAC
GATACCAACGAAGGAGCAATAGCGCTCATGGCTACCGTAAGAGGACCTAA
GGGAATGACGGTCGTAACTAACGATCACAAAACAACAGACAACCCTACCG
TGACCGGAGAGAAGGAGCACTGGAACTCAGACACCGGCGCGATAGACCAC
ATGACGTCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTCCCGGG
GACCATGTGTGAAATCGCCAACGGGACATTCGTGCCGGTAGAGGGGTGGG
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig23216:311..712-

>mRNA_H-paniculata_contig23216.6251.1 ID=mRNA_H-paniculata_contig23216.6251.1|Name=mRNA_H-paniculata_contig23216.6251.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig23216:311..712- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAGCCACTGCGGGAAACATGGACATCGCGGTGAGGATTGCTGGGGCGC
CGAAGGGGACGATCGAAAGGAAACGAAAAAGGATCGAGACCTATGCTGGG
TGTGCGGTAGCCCAGAGCACACCGCAAGACGGTGCCCGAAACGCCACCAC
GATACCAACGAAGGAGCAATAGCGCTCATGGCTACCGTAAGAGGACCTAA
GGGAATGACGGTCGTAACTAACGATCACAAAACAACAGACAACCCTACCG
TGACCGGAGAGAAGGAGCACTGGAACTCAGACACCGGCGCGATAGACCAC
ATGACGTCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTCCCGGG
GACCATGTGTGAAATCGCCAACGGGACATTCGTGCCGGTAGAGGGGTGGG
GATGCAGCCACTGCGGGAAACATGGACATCGCGGTGAGGATTGCTGGGGC
GCCGAAGGGGACGATCGAAAGGAAACGAAAAAGGATCGAGACCTATGCTG
GGTGTGCGGTAGCCCAGAGCACACCGCAAGACGGTGCCCGAAACGCCACC
ACGATACCAACGAAGGAGCAATAGCGCTCATGGCTACCGTAAGAGGACCT
AAGGGAATGACGGTCGTAACTAACGATCACAAAACAACAGACAACCCTAC
CGTGACCGGAGAGAAGGAGCACTGGAACTCAGACACCGGCGCGATAGACC
ACATGACGTCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTCCCG
GGGACCATGTGTGAAATCGCCAACGGGACATTCGTGCCGGTAGAGGGGTG
GGGA
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