mRNA_H-paniculata_contig2321.6249.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2321.6249.1
Unique NamemRNA_H-paniculata_contig2321.6249.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2321.6249.1 vs. uniprot
Match: A0A090C2V0_HYAAE (RxLR effector candidate protein (Fragment) n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090C2V0_HYAAE)

HSP 1 Score: 101 bits (252), Expect = 5.410e-24
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    7 DPSRKDFSTCKRIFRYLSTMPDLGLTFGNRSNGHGLEGLVDTDWAGDVEDQTSTTGYITKLNGGAISWCSEKQQLVTWSSTEAEYVAAGEAGKEPIYLK 303
            DP    +   KR+ RYL   P+ GL F  R  G  + G  D DWAGD+E + ST+GY+  +NGG ISW S+KQ+ V  SSTEAEY+A  EA KE ++LK
Sbjct:   68 DPCPTHWQALKRVLRYLQATPNHGLEF-TREEGSRICGYTDADWAGDIESRRSTSGYVFMMNGGCISWKSQKQRTVALSSTEAEYMALSEATKEAVWLK 165          
BLAST of mRNA_H-paniculata_contig2321.6249.1 vs. uniprot
Match: A0A8B9AF53_PHODC (secreted RxLR effector protein 161-like n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9AF53_PHODC)

HSP 1 Score: 97.1 bits (240), Expect = 3.660e-23
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    1 MEDPSRKDFSTCKRIFRYLSTMPDLGLTFGNRSNGHGLEGLVDTDWAGDVEDQTSTTGYITKLNGGAISWCSEKQQLVTWSSTEAEYVAAGEAGKEPIYLKGVTR 315
            M +P R+ +   K IFRYL +  D G+ F  + +   + G VD D+AGD++D+ STTGY+  L GG ISW S  Q LV  S+TE+EY+A  EA KE ++L G+ +
Sbjct:   66 MANPGRQHWDAVKWIFRYLRSTTDHGIMFVRQQDDPSVVGYVDADYAGDLDDRRSTTGYVFTLAGGPISWRSMVQSLVALSTTESEYMAVAEAAKEALWLTGLVQ 170          
BLAST of mRNA_H-paniculata_contig2321.6249.1 vs. uniprot
Match: A0A2N9GS71_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GS71_FAGSY)

HSP 1 Score: 99.0 bits (245), Expect = 5.510e-23
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    1 MEDPSRKDFSTCKRIFRYLSTMPDLGLTFGNRSNGHGLEGLVDTDWAGDVEDQTSTTGYITKLNGGAISWCSEKQQLVTWSSTEAEYVAAGEAGKEPIYLKGVTR 315
            M +P R+ ++  K IFRYL    + G+ F  +   + + G VD D+AG+V+D+ STTGY+  L+GG I W S  Q +V  S+TEAEY+A  EA KE ++LKG+ +
Sbjct:   94 MANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVK 198          
BLAST of mRNA_H-paniculata_contig2321.6249.1 vs. uniprot
Match: A0A2N9HGZ8_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HGZ8_FAGSY)

HSP 1 Score: 100 bits (250), Expect = 6.600e-23
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 MEDPSRKDFSTCKRIFRYLSTMPDLGLTFGNRSNGHGLEGLVDTDWAGDVEDQTSTTGYITKLNGGAISWCSEKQQLVTWSSTEAEYVAAGEAGKEPIYLKGVTR 315
            M +P R+ ++  K IFRYL    + G+ F  +   + + G VD D+AG+V+D+ STTGY+  L+GG I W S  Q +VT S+TEAEY+AA E  KE ++LKG+ +
Sbjct:  271 MANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVTMSTTEAEYMAAAETAKEALWLKGLVK 375          
BLAST of mRNA_H-paniculata_contig2321.6249.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F)

HSP 1 Score: 99.4 bits (246), Expect = 8.110e-23
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 1
Query:    1 MEDPSRKDFSTCKRIFRYLSTMPDLGLTFGNRSNGHGLEGLVDTDWAGDVEDQTSTTGYITKLNGGAISWCSEKQQLVTWSSTEAEYVAAGEAGKEPIYLKGV 309
            ME P+    +  KRI RY+    D G+ F  R +G G  G  D+D+AGD++D+ ST+G+I  LN GAISW S+KQQ+VT SSTEAEYVAA  +  + ++L+ +
Sbjct:  128 MEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKI 229          
BLAST of mRNA_H-paniculata_contig2321.6249.1 vs. uniprot
Match: A0A2N9HJ76_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HJ76_FAGSY)

HSP 1 Score: 100 bits (250), Expect = 1.290e-22
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 MEDPSRKDFSTCKRIFRYLSTMPDLGLTFGNRSNGHGLEGLVDTDWAGDVEDQTSTTGYITKLNGGAISWCSEKQQLVTWSSTEAEYVAAGEAGKEPIYLKGVTR 315
            M +P R+ ++  K IFRYL    + G+ F  +S  + + G VD D+AG+V+D+ STTGY+  L+GG I W S  Q +V  S+TEAEY+A  EA KE ++LKG+ +
Sbjct:  789 MANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVK 893          
BLAST of mRNA_H-paniculata_contig2321.6249.1 vs. uniprot
Match: A0A2N9GRR2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GRR2_FAGSY)

HSP 1 Score: 100 bits (250), Expect = 1.310e-22
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 MEDPSRKDFSTCKRIFRYLSTMPDLGLTFGNRSNGHGLEGLVDTDWAGDVEDQTSTTGYITKLNGGAISWCSEKQQLVTWSSTEAEYVAAGEAGKEPIYLKGVTR 315
            M +P R+ ++  K IFRYL    + G+ F  +S  + + G VD D+AG+V+D+ STTGY+  L+GG I W S  Q +V  S+TEAEY+A  EA KE ++LKG+ +
Sbjct: 1071 MANPGREHWNAVKWIFRYLKGTAEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVK 1175          
BLAST of mRNA_H-paniculata_contig2321.6249.1 vs. uniprot
Match: A0A177TQX2_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TQX2_9BASI)

HSP 1 Score: 95.9 bits (237), Expect = 1.480e-22
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   37 KRIFRYLSTMPDLGLTFGN-RSNGHGLEGLVDTDWAGDVEDQTSTTGYITKLNGGAISWCSEKQQLVTWSSTEAEYVAAGEAGKEPIYLKGVTR 315
            KR+ RYL+      LTFG  R     +EG VD+DWA D +D+ ST+G++  + GGA+SW S KQ  V  S+ EAEYVAAG AG+E + LKGV +
Sbjct:    5 KRVLRYLNRTSGAKLTFGGQREQSVNVEGFVDSDWAADRDDRRSTSGFVFTVGGGAVSWGSRKQGAVALSTAEAEYVAAGVAGREALMLKGVLK 98          
BLAST of mRNA_H-paniculata_contig2321.6249.1 vs. uniprot
Match: A0A2I0A1S9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0A1S9_9ASPA)

HSP 1 Score: 95.5 bits (236), Expect = 1.690e-22
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    1 MEDPSRKDFSTCKRIFRYLSTMPDLGLTFGNRSNGHGLEGLVDTDWAGDVEDQTSTTGYITKLNGGAISWCSEKQQLVTWSSTEAEYVAAGEAGKEPIYLKGVTR 315
            M +P ++ ++  K I  YL    D GL F   S+   L G VD+D+AGD++ + STTG+I  L GG ISW +  Q +V  S+TEAEY+AA EA KE ++LKG+ R
Sbjct:   22 MANPRKEHWNALKWILCYLKGTSDCGLLFEKNSDSDLLVGYVDSDYAGDLDKRRSTTGFIFTLGGGPISWKATLQNIVALSTTEAEYIAAVEAAKEAVWLKGLVR 126          
BLAST of mRNA_H-paniculata_contig2321.6249.1 vs. uniprot
Match: A0A2N9GQ16_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GQ16_FAGSY)

HSP 1 Score: 100 bits (249), Expect = 1.790e-22
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 MEDPSRKDFSTCKRIFRYLSTMPDLGLTFGNRSNGHGLEGLVDTDWAGDVEDQTSTTGYITKLNGGAISWCSEKQQLVTWSSTEAEYVAAGEAGKEPIYLKGVTR 315
            M +P R+ ++  K IFRYL    + G+ F  +S  + + G VD D+AG+V+D+ STTGY+  L+GG I W S  Q +V  S+TEAEY+A  EA KE ++LKG+ +
Sbjct:  724 MANPGREHWNAVKWIFRYLKGTVEHGILFSRQSGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVK 828          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2321.6249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A090C2V0_HYAAE5.410e-2449.49RxLR effector candidate protein (Fragment) n=3 Tax... [more]
A0A8B9AF53_PHODC3.660e-2344.76secreted RxLR effector protein 161-like n=1 Tax=Ph... [more]
A0A2N9GS71_FAGSY5.510e-2343.81Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
A0A2N9HGZ8_FAGSY6.600e-2344.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0009AB427F8.110e-2347.57uncharacterized protein LOC109950541 n=1 Tax=Prunu... [more]
A0A2N9HJ76_FAGSY1.290e-2244.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9GRR2_FAGSY1.310e-2244.76Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A177TQX2_9BASI1.480e-2250.00Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A2I0A1S9_9ASPA1.690e-2245.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9GQ16_FAGSY1.790e-2244.76Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2321contigH-paniculata_contig2321:17664..17978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue2.4e-18
Seed eggNOG ortholog67593.Physo141588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size315
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.4004712-CDS-H-paniculata_contig2321:17663..179781622929656.4004712-CDS-H-paniculata_contig2321:17663..17978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2321 17664..17978 -
1691480953.8876228-CDS-H-paniculata_contig2321:17663..179781691480953.8876228-CDS-H-paniculata_contig2321:17663..17978Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2321 17664..17978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2321.6249.1prot_H-paniculata_contig2321.6249.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2321 17664..17978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2321.6249.1

>prot_H-paniculata_contig2321.6249.1 ID=prot_H-paniculata_contig2321.6249.1|Name=mRNA_H-paniculata_contig2321.6249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MEDPSRKDFSTCKRIFRYLSTMPDLGLTFGNRSNGHGLEGLVDTDWAGDV
EDQTSTTGYITKLNGGAISWCSEKQQLVTWSSTEAEYVAAGEAGKEPIYL
KGVTR
back to top

mRNA from alignment at H-paniculata_contig2321:17664..17978-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2321.6249.1 ID=mRNA_H-paniculata_contig2321.6249.1|Name=mRNA_H-paniculata_contig2321.6249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig2321:17664..17978- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGACCCATCTCGAAAAGACTTCAGTACATGCAAGCGCATTTTTCG TTATCTCAGTACCATGCCTGACCTCGGTCTTACGTTCGGCAATAGGAGCA ATGGTCACGGTCTTGAAGGACTCGTTGATACCGACTGGGCGGGAGACGTC GAGGACCAAACGTCCACAACGGGATACATAACCAAGCTAAACGGTGGTGC GATAAGTTGGTGCTCCGAGAAGCAACAGTTGGTTACGTGGTCCAGTACAG AGGCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGCCGATATATCTT AAGGGAGTTACTAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2321:17664..17978-

>mRNA_H-paniculata_contig2321.6249.1 ID=mRNA_H-paniculata_contig2321.6249.1|Name=mRNA_H-paniculata_contig2321.6249.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig2321:17664..17978- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGACCCATCTCGAAAAGACTTCAGTACATGCAAGCGCATTTTTCG
TTATCTCAGTACCATGCCTGACCTCGGTCTTACGTTCGGCAATAGGAGCA
ATGGTCACGGTCTTGAAGGACTCGTTGATACCGACTGGGCGGGAGACGTC
GAGGACCAAACGTCCACAACGGGATACATAACCAAGCTAAACGGTGGTGC
GATAAGTTGGTGCTCCGAGAAGCAACAGTTGGTTACGTGGTCCAGTACAG
AGGCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGCCGATATATCTT
AAGGGAGTTACTAGGATGGAGGACCCATCTCGAAAAGACTTCAGTACATG
CAAGCGCATTTTTCGTTATCTCAGTACCATGCCTGACCTCGGTCTTACGT
TCGGCAATAGGAGCAATGGTCACGGTCTTGAAGGACTCGTTGATACCGAC
TGGGCGGGAGACGTCGAGGACCAAACGTCCACAACGGGATACATAACCAA
GCTAAACGGTGGTGCGATAAGTTGGTGCTCCGAGAAGCAACAGTTGGTTA
CGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAG
GAGCCGATATATCTTAAGGGAGTTACTAGG
back to top