mRNA_H-paniculata_contig23185.6242.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23185.6242.1
Unique NamemRNA_H-paniculata_contig23185.6242.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23185.6242.1 vs. uniprot
Match: D8LBZ1_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ1_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 4.090e-87
Identity = 170/279 (60.93%), Postives = 197/279 (70.61%), Query Frame = 1 
Query:    4 QGSHHRPKTAKISDA--VTISPPLATGIFGATENEYLNSFFSGFGSCTQIVQEDEIRGAMIHILNGGQFGMSGVSGDDLYGGETFP-----------LPFGEETGMDESKTARDRSSGSSLVEGGVNGSGGARGAGENSSSASERELRQRAQRARLAAGVACLWAGIGVGAMLGGQTVEATKHYAEYAREAIKGCHDVVSEEVLRAFLCLAHMHSFREDFSMFFRYTAIAKNVAASLERQ--GCSEPAKFLLKCFDALGAFLELEGEEAGSPYEVCYAP 795
            +G+H R K A+++D   V ++P   TG  G  EN +LN+FFSGFGSCTQIVQEDEIRGAMIH+L+ GQFGM  V G+  Y   T             +  GEE  +   K  R    G  +  G   G+GG    GE     SE++L+QRAQRARL+AGVACLWAGIGVGAML GQT EAT  YAE AREAIKGC+DVVSEEVLRAFLCLAHMHSFREDF+ FFRYTA+A +VAASL+RQ  GCSEPAKFLLKCFDA+  FLELEGEE+ SP E   AP
Sbjct:  105 EGAHPRLKMARMTDGDVVRLTPSHGTGTLGLEENRHLNAFFSGFGSCTQIVQEDEIRGAMIHVLSDGQFGMPSVDGESFYSPSTDSSSAGGTSTRRGIGVGEEPSL---KLIRLEEGGLGIAAGTPAGAGG----GE-----SEKDLKQRAQRARLSAGVACLWAGIGVGAMLCGQTAEATSGYAENAREAIKGCYDVVSEEVLRAFLCLAHMHSFREDFTKFFRYTAMANDVAASLDRQQQGCSEPAKFLLKCFDAMSHFLELEGEESNSPIEGIIAP 371
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BLAST of mRNA_H-paniculata_contig23185.6242.1 vs. uniprot
Match: A0A6H5JQB9_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQB9_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 1.070e-63
Identity = 140/244 (57.38%), Postives = 158/244 (64.75%), Query Frame = 1 
Query:  157 DEIRGAMIHILNGGQFGMSGVSGDDLYGGETFPLPFGEETGMDESKTARDRSSGSS-------------LVEGGVNGSGGARGAGENSSSASERELRQRAQRARLAAGVACLWAGIGVGAMLGGQTVEATKHYAEYAREAIKGCHDVVSEEVLRAFLCLAHMHSFREDFSMFFRYTAIAKNVAASLERQ------------------GCSEPAKFLLKCFDALGAFLELEGEEAGSPYEVCYAP 795
            DEIRGAMIH+L+ GQFGM  V G+  Y   T            +S TA   S+GS              L EGG+  + G     +   S  ER+L+QRAQRARL+AGVACLWAGIGVGAML GQT EAT  YAE AREAIKGC+DVVSEEVLRAFLCLAHMHSFREDF+ FFRYTA+A +VAASL+RQ                  GCSEPAKFLLKCFDA+  FLELEGEE+ SP     AP
Sbjct:  105 DEIRGAMIHVLSYGQFGMPSVDGESFYSPST------------DSSTAGGTSTGSGSGVGEEPSLKLIRLKEGGLGIAAGTPAGADGGGS--ERDLKQRAQRARLSAGVACLWAGIGVGAMLCGQTAEATSGYAENAREAIKGCYDVVSEEVLRAFLCLAHMHSFREDFTKFFRYTAMANDVAASLDRQASAKLPQGGSRGSQPKQQGCSEPAKFLLKCFDAMSHFLELEGEESNSPITGIVAP 334
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23185.6242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBZ1_ECTSI4.090e-8760.93Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JQB9_9PHAE1.070e-6357.38Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23185contigH-paniculata_contig23185:349..3866 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size795
Cds size795
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23185.6242.1prot_H-paniculata_contig23185.6242.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23185 349..3866 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.1126037-CDS-H-paniculata_contig23185:348..4591622929655.1126037-CDS-H-paniculata_contig23185:348..459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23185 349..459 -
1691480953.3058972-CDS-H-paniculata_contig23185:348..4591691480953.3058972-CDS-H-paniculata_contig23185:348..459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23185 349..459 -
1622929655.1270766-CDS-H-paniculata_contig23185:2111..22251622929655.1270766-CDS-H-paniculata_contig23185:2111..2225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23185 2112..2225 -
1691480953.315003-CDS-H-paniculata_contig23185:2111..22251691480953.315003-CDS-H-paniculata_contig23185:2111..2225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23185 2112..2225 -
1622929655.143894-CDS-H-paniculata_contig23185:2510..29241622929655.143894-CDS-H-paniculata_contig23185:2510..2924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23185 2511..2924 -
1691480953.3239408-CDS-H-paniculata_contig23185:2510..29241691480953.3239408-CDS-H-paniculata_contig23185:2510..2924Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23185 2511..2924 -
1622929655.1648476-CDS-H-paniculata_contig23185:3710..38661622929655.1648476-CDS-H-paniculata_contig23185:3710..3866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23185 3711..3866 -
1691480953.3337536-CDS-H-paniculata_contig23185:3710..38661691480953.3337536-CDS-H-paniculata_contig23185:3710..3866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23185 3711..3866 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23185.6242.1

>prot_H-paniculata_contig23185.6242.1 ID=prot_H-paniculata_contig23185.6242.1|Name=mRNA_H-paniculata_contig23185.6242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
MQGSHHRPKTAKISDAVTISPPLATGIFGATENEYLNSFFSGFGSCTQIV
QEDEIRGAMIHILNGGQFGMSGVSGDDLYGGETFPLPFGEETGMDESKTA
RDRSSGSSLVEGGVNGSGGARGAGENSSSASERELRQRAQRARLAAGVAC
LWAGIGVGAMLGGQTVEATKHYAEYAREAIKGCHDVVSEEVLRAFLCLAH
MHSFREDFSMFFRYTAIAKNVAASLERQGCSEPAKFLLKCFDALGAFLEL
EGEEAGSPYEVCYAP
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mRNA from alignment at H-paniculata_contig23185:349..3866-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23185.6242.1 ID=mRNA_H-paniculata_contig23185.6242.1|Name=mRNA_H-paniculata_contig23185.6242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3518bp|location=Sequence derived from alignment at H-paniculata_contig23185:349..3866- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGCTCACACCACCGGCCGAAGACCGCAAAGATATCGGACGCGGT
GACAATTTCTCCGCCGTTGGCAACCGGGATATTTGGTGCGACTGAAAACG
AGTACCTGAACTCGTTCTTCAGTGGCTTTGGGTCCTGCACACAGATTGTC
CAAGAGGTGCTTAAATTTTTTTGTCGAGCGTCAACAGTCCTGTGGCCATA
GATCTCAATTCGGACGATTCTGCGTTAGTGTTTGCTGGACAGTTGAGCGC
CGATGTCCACAAAGTCTCCACTTGGAAAAGCAGGAATGACCATGCACACG
AAATGCTCACCTGTAACAGCAAGACTAGAAAAGGCCCATGACATGAATTC
GGATTTAGATGGCTAGTTTAGTACAGACAGCGCAAGCATCCCATGGGCTG
ACCAAGCTCAGCGTGTTGTGCATTTGTAGTTACAGAGCTAAAGGCAGGTA
GACTAGTCGGTGAGCGTCTGTAAATTACTTCAATGTGACGGGGGGCACAT
GTAATGCATTTGGAGGCCATGAAGTCGGTCGGTCGGTCGGTCGGTCGGTC
TACAGCGTGCTCGTCACACCGGTGCCTGCAAGTGATCATACGGCGGTCAG
CCCCCCCCCCACCCGACAGGATGAGTACACCTATTTAGCTCAGATTTGTC
ACAAGTTAAACATCAGCATCTACGACGTACTTACTGCCATTGCTGTTCAG
TTTTGATCTCTATGCGGAGGTTGAATATTATTTAGGTTTTCAAAGGGCAA
GTGATACCATTGTGATGGGGTAGTTAGCATGGGTGTAGCGGGACTGATTG
CCTCTTGATTTTTGCTCTTGGAAAGGACAAACAGATTCTGATAAAGATAC
CTTCTGCCCGGTCACCCCTTGCCGTCGCCCGCCCACCCCGTAGCTTGTTC
CCTCTAATATCGGTACTGTTCCCTCCGAAACTTGGCTGACAGGACGAAAT
CCGCGGAGCCATGATTCATATTCTCAACGGCGGACAATTTGGCATGTCAG
GCGTCAGCGGCGACGACCTGTATGGGGGGGAAACCTTCCCTTTGCCTTTC
GGCGAGGAAACAGGAATGGACGAAAGCAAGACCGCGCGAGATAGGAGCAG
TGGTTCGTCCTTAGTCGAGGGCGGCGTAAACGGGTCGGGCGGGGCAAGAG
GCGCCGGCGAGAATAGTAGTAGTGCAAGTGAGAGGGAATTGAGGCAGAGG
GCGCAGAGGGCGAGGCTGGCGGCGGGGGTGGCGTGTTTGTGGGCGGGGAT
TGGGGTGGGAGCGATGCTGGGCGGGCAGACCGTGGAGGCGACGAAGCACT
ATGCGGAGTACGCACGGGAGGCGATTAAGGGATGCCACGATGTGGTATCC
GAAGAGGTCTGTCTGTACGTCTCTCCGTCTGTCTGTGCGTCTGTTTTGTT
ACACTACAACCTTATTGTTTTTGGTCGTCACAATAGGCTGTCGCTTAGAG
TGAAACCCGTTGGTCGTTCATGTCTGTCGGTCTGTCTCTGTCATACCACG
GCCTTTTCTTTTTTTTAAGTGAATTTTCGTTCAGCAGTTAGTTTTTTGCC
TCCCCTCGTGGACTTTCTCTCTCTCGCTCTTTCTATCTAACTCACTCTGC
CTATGTTTTTCTCCCTGCCTGTGTGTTATGTTTGAGCTTAGGTACTGAGA
GCGTTCTTGTGCCTGGCGCACATGCACTCGTTTCGGGAGGACTTTTCGAT
GTTCTTTCGTTACACTGCCATAGCGAAGAACGTTGCCGCCTCCCTCGAAA
GACAGGTCTGTCATACTTCGTAAATGGTCATATTATATATGGTTGTATTC
CTGAGCGTCGTGGATTTCAGTAGTGACAGAATTCAGAGCAATGAGACTAA
TGTGATGGCGATCAATGTACTAGAAGTGATGCATCATCCCGGTTGTTTAA
CTTCCCTAGCAATAGTGTCTTCGTAGGACTAACTAACCCTTGCGCACAAA
AAGGGTTCACCCATTCACTTCATCCCGTGGGAAGATAGTCCTCCTTCGTA
GATAGGTCTTGGTCGATGAACTCCTCCCACTTCTCCGCTGTGGCCCGACG
CGCTTGGGTCTGTCTTTGGGTCGGGCTTACTATCTCAGGAACAAGACTTT
GCTTCTGCAAGACGGCGAAGTGGTTACCGTGGCGGACTTGGCACGAAGGT
GATGTTTTTATGCCTCAAAAATAACAATTACCCCGATCAATCATGGGTGC
GACGCGGTAGTCCATTAGCCAATCGGTCACGTGTTTTGTGCGTAAAATGA
AAAAAATTAAGCGATATGGGCTTGCGAAGTAGGGTTCATGAAGGTTCAAC
TACCTTGACCGAACCTGGTGTTTTTCAGCTCCAAATTTCAGTTTATGTTG
ATCAAAATAAGTTGATATCTGGGGTTGTTTGTGTGTGTTAGCGCAGTATC
TTGGACTGGACGAATTGATGTCAATTGTCAGTGCGGTGGTTGTTGTTTAT
GGTGGCATGCATCTATCGTGTTGATTTTCGATTGGATCATTCGAATTTTG
AAGCCTGACTAAATCCCCCCCCCTGGCAAATTCTGTGGGACAGGAATAAG
TGGAACTACTACTAGACAAGGTGATAGTTGCGTGCAGAGGGGCGGCTGCA
CACTATAATGATATGACATCTGACGGAAATTGTTATTTGCAGATGATCAG
TTGCGCAACGTCCTAGCCTAGTCGGTGGCGGCAACAGGCAACTACCCAGT
GATCGTTGGAATCCTGGTCACCGTTTCGCAGTTCTGCGTTGTTTACTATA
CCATGTTGTTTGAGCCACCTGGGTTGGTCAGGCGTTGCTGAGTCTTTCCT
CCTTAAGTAAGTGAAATGTTGAATGGGTACTGACTGTACCTATCATGTGC
TGGGGAGGGGGGGGGGTGATTGATGAACGCGACTGAGCGATGAGACATAT
ACTATTTTGCGAAGTATATGCGACATCTGTGGATAACACGATATGAGGCA
TAAAGGCGTAGAAATCTAAGTGTTGCAATGCTGTAAACCACAGGGATGCA
ACATCATTGGCCTTTTCCTTCTGGCTTCGTGTCTGCTCGAAAACGGTTTT
GGGTGTTGAATTGTCAATAGTAAACGGGGTAGAGAGCTACCGTAGCTGTA
CCACAGCGGACGTTGTTTTTTTCAAACCCAGTTTTGTCGATAATCAAAGA
CCATACACTATCGGAAGAACAATTCTATCGTAGACTAATGTACCTCGACG
AGACCCTTTCGAGCCATTGCACTGCCGAAATACTACGCCTATCTAATGGC
GAATATATCTCGACGAGATCTTTTTAACCACGCAGCTCTCGCTGCCACCG
CCCCTGTCATACTACTGCTGATTATTCATTCATTGTTGCTTTCTCTATTT
TTTTATTACTTCGTGTGTACGCGGGTGCGTGCGTTCTGCATATAATTCGA
TTACCAGGGATGCTCAGAGCCGGCGAAGTTTCTGCTAAAGTGCTTCGACG
CGCTGGGAGCGTTTTTGGAGCTTGAGGGAGAAGAGGCCGGCTCGCCGTAT
GAGGTATGTTATGCACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig23185:349..3866-

>mRNA_H-paniculata_contig23185.6242.1 ID=mRNA_H-paniculata_contig23185.6242.1|Name=mRNA_H-paniculata_contig23185.6242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig23185:349..3866- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGCTCACACCACCGGCCGAAGACCGCAAAGATATCGGACGCGGT
GACAATTTCTCCGCCGTTGGCAACCGGGATATTTGGTGCGACTGAAAACG
AGTACCTGAACTCGTTCTTCAGTGGCTTTGGGTCCTGCACACAGATTGTC
CAAGAGATGCAGGGCTCACACCACCGGCCGAAGACCGCAAAGATATCGGA
CGCGGTGACAATTTCTCCGCCGTTGGCAACCGGGATATTTGGTGCGACTG
AAAACGAGTACCTGAACTCGTTCTTCAGTGGCTTTGGGTCCTGCACACAG
ATTGTCCAAGAGGACGAAATCCGCGGAGCCATGATTCATATTCTCAACGG
CGGACAATTTGGCATGTCAGGCGTCAGCGGCGACGACCTGTATGGGGGGG
AAACCTTCCCTTTGCCTTTCGGCGAGGAAACAGGAATGGACGAAAGCAAG
ACCGCGCGAGATAGGAGCAGTGGTTCGTCCTTAGTCGAGGGCGGCGTAAA
CGGGTCGGGCGGGGCAAGAGGCGCCGGCGAGAATAGTAGTAGTGCAAGTG
AGAGGGAATTGAGGCAGAGGGCGCAGAGGGCGAGGCTGGCGGCGGGGGTG
GCGTGTTTGTGGGCGGGGATTGGGGTGGGAGCGATGCTGGGCGGGCAGAC
CGTGGAGGCGACGAAGCACTATGCGGAGTACGCACGGGAGGCGATTAAGG
GATGCCACGATGTGGTATCCGAAGAGGACGAAATCCGCGGAGCCATGATT
CATATTCTCAACGGCGGACAATTTGGCATGTCAGGCGTCAGCGGCGACGA
CCTGTATGGGGGGGAAACCTTCCCTTTGCCTTTCGGCGAGGAAACAGGAA
TGGACGAAAGCAAGACCGCGCGAGATAGGAGCAGTGGTTCGTCCTTAGTC
GAGGGCGGCGTAAACGGGTCGGGCGGGGCAAGAGGCGCCGGCGAGAATAG
TAGTAGTGCAAGTGAGAGGGAATTGAGGCAGAGGGCGCAGAGGGCGAGGC
TGGCGGCGGGGGTGGCGTGTTTGTGGGCGGGGATTGGGGTGGGAGCGATG
CTGGGCGGGCAGACCGTGGAGGCGACGAAGCACTATGCGGAGTACGCACG
GGAGGCGATTAAGGGATGCCACGATGTGGTATCCGAAGAGGTACTGAGAG
CGTTCTTGTGCCTGGCGCACATGCACTCGTTTCGGGAGGACTTTTCGATG
TTCTTTCGTTACACTGCCATAGCGAAGAACGTTGCCGCCTCCCTCGAAAG
ACAGGTACTGAGAGCGTTCTTGTGCCTGGCGCACATGCACTCGTTTCGGG
AGGACTTTTCGATGTTCTTTCGTTACACTGCCATAGCGAAGAACGTTGCC
GCCTCCCTCGAAAGACAGGGATGCTCAGAGCCGGCGAAGTTTCTGCTAAA
GTGCTTCGACGCGCTGGGAGCGTTTTTGGAGCTTGAGGGAGAAGAGGCCG
GCTCGCCGTATGAGGTATGTTATGCACCGGGATGCTCAGAGCCGGCGAAG
TTTCTGCTAAAGTGCTTCGACGCGCTGGGAGCGTTTTTGGAGCTTGAGGG
AGAAGAGGCCGGCTCGCCGTATGAGGTATGTTATGCACCG
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