mRNA_H-paniculata_contig23181.6241.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23181.6241.1
Unique NamemRNA_H-paniculata_contig23181.6241.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23181.6241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23181contigH-paniculata_contig23181:895..3247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue3.8e-07
Seed eggNOG ortholog2880.D7FJW4
Preferred nameYTA6
KEGG rclassRC00002
KEGG koko:K01509,ko:K13254,ko:K20293
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000166,GO:0000226,GO:0000287,GO:0001578,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005856,GO:0005938,GO:0005940,GO:0006139,GO:0006163,GO:0006282,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007346,GO:0008017,GO:0008092,GO:0008144,GO:0008150,GO:0008152,GO:0008568,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010569,GO:0015631,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0030427,GO:0030554,GO:0031097,GO:0031323,GO:0032153,GO:0032155,GO:0032156,GO:0032161,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0035639,GO:0035838,GO:0035840,GO:0035841,GO:0036094,GO:0036391,GO:0042623,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045787,GO:0045931,GO:0046034,GO:0046483,GO:0046872,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0051013,GO:0051052,GO:0051171,GO:0051286,GO:0051726,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0080090,GO:0080134,GO:0080135,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0140096,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:2000779,GO:2001020
EggNOG free text desc.Belongs to the AAA ATPase family
EggNOG OGsCOG0464@1,KOG0740@2759
EC3.6.1.3,3.6.4.3
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons2
Model size853
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23181.6241.1prot_H-paniculata_contig23181.6241.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23181 895..2607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.026616-CDS-H-paniculata_contig23181:894..9561622929655.026616-CDS-H-paniculata_contig23181:894..956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23181 895..956 -
1691480953.2800283-CDS-H-paniculata_contig23181:894..9561691480953.2800283-CDS-H-paniculata_contig23181:894..956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23181 895..956 -
1622929655.0395706-CDS-H-paniculata_contig23181:2456..26071622929655.0395706-CDS-H-paniculata_contig23181:2456..2607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23181 2457..2607 -
1691480953.2902353-CDS-H-paniculata_contig23181:2456..26071691480953.2902353-CDS-H-paniculata_contig23181:2456..2607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23181 2457..2607 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929655.0505867-UTR-H-paniculata_contig23181:2607..32471622929655.0505867-UTR-H-paniculata_contig23181:2607..3247Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23181 2608..3247 -
1691480953.2979536-UTR-H-paniculata_contig23181:2607..32471691480953.2979536-UTR-H-paniculata_contig23181:2607..3247Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23181 2608..3247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23181.6241.1

>prot_H-paniculata_contig23181.6241.1 ID=prot_H-paniculata_contig23181.6241.1|Name=mRNA_H-paniculata_contig23181.6241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MRRTPGSAQGFGSSAGAPALARTPSSETLLDSGIATLARAVEVDGVGQLE
EALVLYREGIDLLMRAARDEP
back to top

mRNA from alignment at H-paniculata_contig23181:895..3247-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23181.6241.1 ID=mRNA_H-paniculata_contig23181.6241.1|Name=mRNA_H-paniculata_contig23181.6241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2353bp|location=Sequence derived from alignment at H-paniculata_contig23181:895..3247- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTCTGAGTTTCGGAATATGCCGGATGGATGATGACACATAGAATAAA
GGGTTCACCCCTGTTATCTCGTTTTACTAGTACTTGGAGCAGTCGTACAT
AGTCCGGTGTACGTGGAGTAAAAGTGCTTACTCTGAAGTTCAGACGACGA
ACTTTTAAAATACTCTAGTCGTTAATAGTCGTGTTGATAGTCGTCCGGGG
GGTGGAGTACGTGGAGTATTCGCGCCAGAAAATCATAAGAATTCGCCTGA
ATGATCAGCATGAACACGTGTATTCGTTTATTCCATATGCCTCGGAAGTA
TTGTACACGACTGACTGCTCAAAGTTTTAGCCAAACGAATAAACAGAGAT
CAACGTTCACTTCAGTCTATCTGCTCCTGCCTTATGAAACCTAGGCGAAT
AATTTCGCGTTGGTTTTTTCTAGTCGCGAGTGCTCGAATTATCCGAAAAT
TCCGTCGATCGGGGGCGTGAGATCGTCGACACGTTTCGGTAATCGCCAAC
CAACCCTACAGCCTCGTTTCCCGAAGGTTTGACTTAGCGGCGTGTAATCG
TTAGCCGTTTACTACTGAAGCGTTAATTGTAAAGCCGTTAACAGTCAACG
GTTTGCCGTTTGCTGTACTAAACAAGAACAGCTTGAGGCCATGAGAAGAA
CACCGGGTTCAGCGCAGGGGTTCGGTTCTTCCGCGGGTGCACCGGCGCTG
GCGAGGACACCATCGAGTGAGACACTGCTTGACAGCGGCATCGCGACACT
TGCTCGCGCCGTGGAGGTGGATGGTGTGGGCCAACTGGAAGGTGCGCGGT
TGATATCTACCGTATCCATACCCTTGTGAAGTAGTAGTAGACCAAGGTTA
CGCTAGGATTGTTGGTGGTGGTGTTGGTGGTGCTGATGGCGATGGTAATA
GTCACAAGGGGGGGATCTAAGTTCCCAACATTTTCTCTATTGGTGGCAAG
GAGGAGGAGGTTGGAGTTGGGTAAATTATGCCACTGGCATAGTAATCGTG
GCCCGCCTATAATAGTGTCATTGTTTAACACGGTAAGGTGGTCGTCGTTG
TCCAAGTTTGTCATTGCGTACTTTATGAAAACTGAATCATCGTGCGAGCG
TAGCGAGCTACTGTGAGCATGCGCTGCAAGTCCGTGGGTCGAGGACAAGG
CAGCACGAACTAACTGCACAGGTAAGCGTAGCTGTCACACTTCGTAGCTG
TGGGCACACTTTACCACTAGTGCCATGGTGTACCGTTAGGTATTAGCAAT
ACCGTCGTCCAGTTAATCAGTTATTATCGCTTCAGGGTCTGGACTTCAAG
CGGAGTTCGTACATGATCCCTAACCAAAGAAAAAGAAAAGAAAATTATGC
CTAAACCTATGTTTGGCATGTTGACGGAGATAGGGGTACCTTCTTTACCT
GTGTTTCCGACAGGCGGGAAGTGTATGTATGTATGTGTGTGTGTGTGTGT
GTGTCTATCGCACAGACAGGGAAGTAGCATGGCTCTTTGCACAAGGAAAG
ACGGCAGCGCTCGATAATTGTGGTGGCCAAAGTATAATCTCTGTTTATAA
AAATGACCGAGTTGCAATTTAAGGCTTTGTGCAAGTTGTTATAACAGCTT
TTGTAAGCTGCAACGCAGCGTTCATTGTGGCTGCCATATATGGTGGGGTA
CACTGCAGCGTCGCTGACTCCATTTCGAGGCAAACCACAGTGTCTACCAT
CCATCAGACTAGTGTTTACGCAGCTCAGGTTTTAATCGGGCGCTGCATAA
CCTCAGATTATCATCATTACCTACATGTGTACAACATCATTACTGTATTA
TTTATAAGTGTCTTTTACTGAATACTTTGTGAATACTACAGAAGCGCACC
ACGGACCTACTCCCGAACGGGTAGGGTAGCTCGTGAGCTGAGCATGACTG
GAAGTCTAGTCAGAGGTCTTTTAGCGGGTGCAAACCCCACACTGCCTGCT
TGGTTCGGCCGAACCGGGGTGGCACCTACCCCGCAGAGGAATGAATAACT
CTGTTCTGTTAAAAGGAAATGTAGAAATACTTGGGTAGAAATACCTAGGT
ATGGAAGCATCGGATAAAGGTTTTTGCCTTAGCCTTCCGGGGGTTAAATA
TGTATATATACATAAGCGGATTAACTTGACGTATGAAGGATGGCTCGTAG
GTCAAGTGGGTATTTATTATCTGGTGCTCACTTATAGGTCAGTCACGTCA
TGTCCACGCACGTTACACACCCTGTTGATTGAATACATGTATACTCCCTA
TTGCATATACAAGTCCTTCTCTGCTCCTTCCTCCCCACCAGAGGCCCTGG
TACTATACAGAGAAGGAATCGATCTGCTCATGCGAGCCGCTCGCGACGAG
CCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23181:895..3247-

>mRNA_H-paniculata_contig23181.6241.1 ID=mRNA_H-paniculata_contig23181.6241.1|Name=mRNA_H-paniculata_contig23181.6241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig23181:895..3247- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAAGAACACCGGGTTCAGCGCAGGGGTTCGGTTCTTCCGCGGGTGC
ACCGGCGCTGGCGAGGACACCATCGAGTGAGACACTGCTTGACAGCGGCA
TCGCGACACTTGCTCGCGCCGTGGAGGTGGATGGTGTGGGCCAACTGGAA
GATGAGAAGAACACCGGGTTCAGCGCAGGGGTTCGGTTCTTCCGCGGGTG
CACCGGCGCTGGCGAGGACACCATCGAGTGAGACACTGCTTGACAGCGGC
ATCGCGACACTTGCTCGCGCCGTGGAGGTGGATGGTGTGGGCCAACTGGA
AGAGGCCCTGGTACTATACAGAGAAGGAATCGATCTGCTCATGCGAGCCG
CTCGCGACGAGCCCAGGCCCTGGTACTATACAGAGAAGGAATCGATCTGC
TCATGCGAGCCGCTCGCGACGAGCCC
back to top