mRNA_H-paniculata_contig23161.6237.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23161.6237.1
Unique NamemRNA_H-paniculata_contig23161.6237.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23161.6237.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.820e-16
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 MDESFCNQAHGSAYSYFCTNKDGVVQDGFRRTLGKGLRMIMVNAITR 141
            MDESFC+Q HGSAYSYF T+ DGVVQDG  RT GKGLRMIMV+AIT+
Sbjct:  269 MDESFCHQLHGSAYSYFLTDDDGVVQDGMGRTSGKGLRMIMVHAITK 315
[Close]
BLAST of mRNA_H-paniculata_contig23161.6237.1 vs. uniprot
Match: A0A6H5KU97_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU97_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.160e-16
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 MDESFCNQAHGSAYSYFCTNKDGVVQDGFRRTLGKGLRMIMVNAITRFWG 150
            MDESF +QAHGS YSYF +++DGVVQDG  RT GKGLRMIMV+AIT+ WG
Sbjct:  140 MDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITK-WG 188
[Close]
BLAST of mRNA_H-paniculata_contig23161.6237.1 vs. uniprot
Match: A0A6H5JWX3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX3_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 6.580e-16
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 MDESFCNQAHGSAYSYFCTNKDGVVQDGFRRTLGKGLRMIMVNAITRFWG 150
            MDESF +QAHGS YSYF +++DGVVQDG  RT GKGLRMIMV+AIT+ WG
Sbjct:  134 MDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITK-WG 182
[Close]
BLAST of mRNA_H-paniculata_contig23161.6237.1 vs. uniprot
Match: A0A6H5KZM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM0_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 7.160e-16
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 MDESFCNQAHGSAYSYFCTNKDGVVQDGFRRTLGKGLRMIMVNAITR 141
            MDESFC+Q HGSAYSYF T+ +GVVQDG  RT GKGLRMIMV+AIT+
Sbjct:  269 MDESFCHQLHGSAYSYFLTDDNGVVQDGMGRTSGKGLRMIMVHAITK 315
[Close]
BLAST of mRNA_H-paniculata_contig23161.6237.1 vs. uniprot
Match: A0A6H5JWS3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS3_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.450e-15
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 MDESFCNQAHGSAYSYFCTNKDGVVQDGFRRTLGKGLRMIMVNAITRFWG 150
            MDESF +QAHGS YSYF ++ DGVVQDG  RT GKGLRMIMV+AIT+ WG
Sbjct:  176 MDESFVHQAHGSPYSYFPSDDDGVVQDGIGRTTGKGLRMIMVHAITK-WG 224
[Close]
BLAST of mRNA_H-paniculata_contig23161.6237.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.590e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 MDESFCNQAHGSAYSYFCTNKDGVVQDGFRRTLGKGLRMIMVNAITRFWG 150
            MDESF +QAHGS YSYF +++DGVVQDG  RT GKGLRMIMV+AIT+ WG
Sbjct:    1 MDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITK-WG 49
[Close]
BLAST of mRNA_H-paniculata_contig23161.6237.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.130e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 MDESFCNQAHGSAYSYFCTNKDGVVQDGFRRTLGKGLRMIMVNAITRFWG 150
            MDESF +QAHGS YSYF +++DGVVQDG  RT GKGLRMIMV+AIT+ WG
Sbjct:  154 MDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITK-WG 202
[Close]
BLAST of mRNA_H-paniculata_contig23161.6237.1 vs. uniprot
Match: A0A6H5KF49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF49_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.180e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 MDESFCNQAHGSAYSYFCTNKDGVVQDGFRRTLGKGLRMIMVNAITRFWG 150
            MDESF +QAHGS YSYF +++DGVVQDG  RT GKGLRMIMV+AIT+ WG
Sbjct:  276 MDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITK-WG 324
[Close]
BLAST of mRNA_H-paniculata_contig23161.6237.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.200e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 MDESFCNQAHGSAYSYFCTNKDGVVQDGFRRTLGKGLRMIMVNAITRFWG 150
            MDESF +QAHGS YSYF +++DGVVQDG  RT GKGLRMIMV+AIT+ WG
Sbjct:  271 MDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITK-WG 319
[Close]
BLAST of mRNA_H-paniculata_contig23161.6237.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.200e-15
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 MDESFCNQAHGSAYSYFCTNKDGVVQDGFRRTLGKGLRMIMVNAITRFWG 150
            MDESF +QAHGS YSYF +++DGVVQDG  RT GKGLRMIMV+AIT+ WG
Sbjct:  281 MDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITK-WG 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23161.6237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ25_ECTSI1.820e-1678.72Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KU97_9PHAE2.160e-1674.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JWX3_9PHAE6.580e-1674.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KZM0_9PHAE7.160e-1676.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS3_9PHAE1.450e-1574.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KHE7_9PHAE1.590e-1574.00DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KDX7_9PHAE2.130e-1574.00DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KF49_9PHAE2.180e-1574.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIM5_9PHAE2.200e-1574.00DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE2.200e-1574.00DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23161contigH-paniculata_contig23161:1209..1399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size191
Cds size171
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.363966-CDS-H-paniculata_contig23161:1208..13791622929654.363966-CDS-H-paniculata_contig23161:1208..1379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23161 1209..1379 +
1691480953.054118-CDS-H-paniculata_contig23161:1208..13791691480953.054118-CDS-H-paniculata_contig23161:1208..1379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23161 1209..1379 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929654.3939724-UTR-H-paniculata_contig23161:1379..13991622929654.3939724-UTR-H-paniculata_contig23161:1379..1399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23161 1380..1399 +
1691480953.0690064-UTR-H-paniculata_contig23161:1379..13991691480953.0690064-UTR-H-paniculata_contig23161:1379..1399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23161 1380..1399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23161.6237.1prot_H-paniculata_contig23161.6237.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23161 1209..1379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23161.6237.1

>prot_H-paniculata_contig23161.6237.1 ID=prot_H-paniculata_contig23161.6237.1|Name=mRNA_H-paniculata_contig23161.6237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MDESFCNQAHGSAYSYFCTNKDGVVQDGFRRTLGKGLRMIMVNAITRFWG
FGNHRQ*
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mRNA from alignment at H-paniculata_contig23161:1209..1399+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23161.6237.1 ID=mRNA_H-paniculata_contig23161.6237.1|Name=mRNA_H-paniculata_contig23161.6237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=191bp|location=Sequence derived from alignment at H-paniculata_contig23161:1209..1399+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAATCGTTTTGCAACCAGGCCCATGGTTCGGCGTATTCGTATTT
CTGTACGAACAAGGATGGGGTAGTGCAGGACGGCTTTCGTAGAACGTTAG
GAAAGGGCTTGCGCATGATCATGGTGAATGCGATCACACGATTTTGGGGT
TTTGGCAACCACAGACAGTAAGGGTTTTTGCATCAAGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig23161:1209..1399+

>mRNA_H-paniculata_contig23161.6237.1 ID=mRNA_H-paniculata_contig23161.6237.1|Name=mRNA_H-paniculata_contig23161.6237.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig23161:1209..1399+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAATCGTTTTGCAACCAGGCCCATGGTTCGGCGTATTCGTATTT
CTGTACGAACAAGGATGGGGTAGTGCAGGACGGCTTTCGTAGAACGTTAG
GAAAGGGCTTGCGCATGATCATGGTGAATGCGATCACACGATTTTGGGGT
TTTGGCAACCACAGACAGTAAATGGATGAATCGTTTTGCAACCAGGCCCA
TGGTTCGGCGTATTCGTATTTCTGTACGAACAAGGATGGGGTAGTGCAGG
ACGGCTTTCGTAGAACGTTAGGAAAGGGCTTGCGCATGATCATGGTGAAT
GCGATCACACGATTTTGGGGTTTTGGCAACCACAGACAGTAA
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