mRNA_H-paniculata_contig2316.6236.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2316.6236.1 vs. uniprot
Match: D7G5R5_ECTSI (Electron transfer flavoprotein subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5R5_ECTSI) HSP 1 Score: 426 bits (1095), Expect = 1.900e-145 Identity = 215/257 (83.66%), Postives = 238/257 (92.61%), Query Frame = 2
Query: 38 MRVLVGVKRVVDYAVKVRIQPDKAGVELKNVKMSMNPFCENAIEEAVRLKESKNASEIVAVSIGPKAAADTIRTALAMGADRGVHVLTDDSIRTDQQLEPLTVAKILKKVVEEQKADLVLLGKQSIDGDCSLTGPMLAGMLGWPQATFAAKITVQDSGQKLEVERETDTGTQILSVPLPAVVTADLRLNEPRYATLPNIMKAKKKQVDVMEAAGMDIDLTPQNVVTEVVPPPARKGGVFVENVDELLDKLKNEAGVL 808
MRV+VGVKRVVDYAVKVRIQPDKAGVELKNVKMSMNPFCENA+EEAV+LKE+K ASE++AVSIGPKAA DT+RTALAMGADRGVHV+TDD++RTDQ LEPL VA +LKKVVEEQK DLVLLGKQSIDGDCS TGPMLAGMLGWPQATFAAK+TV ++G++LEVERETDTGTQ+LSVPLPAVVTADLRLNEPRYATLPNIMKAKKK VDV+ AA M +DL P+ V EVVPPP R+GGV VE+VDEL+DKLK EAGVL
Sbjct: 1 MRVMVGVKRVVDYAVKVRIQPDKAGVELKNVKMSMNPFCENAMEEAVKLKETKAASEVIAVSIGPKAAKDTLRTALAMGADRGVHVMTDDAVRTDQGLEPLAVAGLLKKVVEEQKVDLVLLGKQSIDGDCSQTGPMLAGMLGWPQATFAAKVTVVEAGKQLEVERETDTGTQVLSVPLPAVVTADLRLNEPRYATLPNIMKAKKKTVDVLTAADMGVDLKPRTTVIEVVPPPVRQGGVIVESVDELIDKLKTEAGVL 257
BLAST of mRNA_H-paniculata_contig2316.6236.1 vs. uniprot
Match: A0A7S2HH98_9STRA (Electron transfer flavoprotein subunit beta n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HH98_9STRA) HSP 1 Score: 354 bits (909), Expect = 2.810e-117 Identity = 185/260 (71.15%), Postives = 216/260 (83.08%), Query Frame = 2
Query: 38 MRVLVGVKRVVDYAVKVRIQPD-KAGVELKNVKMSMNPFCENAIEEAVRLKESKNASEIVAVSIGPKAAADTIRTALAMGADRGVHVLTDDSIRTD-QQLEPLTVAKILKKVVEEQKADLVLLGKQSIDGDCSLTGPMLAGMLGWPQATFAAKITVQDSGQKLEVERETDTGTQILSVP-LPAVVTADLRLNEPRYATLPNIMKAKKKQVDVMEAAGMDIDLTPQNVVTEVVPPPARKGGVFVENVDELLDKLKNEAGVL 808
MRVLVGVKRVVDYAVKVR+ PD K+GV+L NVKMSMNPFCE A+EEAVRLKESK A E+VAVS+GPK +T+RTALAMG DR VHV T ++RTD +L+PL+VA+IL+KVVE+++ DLV+LGKQSID DC TGPMLAG LGWPQ TFAAK+ V D G LEVERETD GT+ + +P LPAV+T DLRLNEPRYATLPNIMKAKKK+VD M A +DLTP+N V EV PPARK GV VE+VD+L+DKLKNEAGV+
Sbjct: 1 MRVLVGVKRVVDYAVKVRVNPDGKSGVDLANVKMSMNPFCEIAVEEAVRLKESKAAKEVVAVSVGPKQCTETLRTALAMGCDRAVHVQT--ALRTDYMELQPLSVARILEKVVEKEEPDLVVLGKQSIDSDCGQTGPMLAGFLGWPQVTFAAKLDVVDGGSSLEVERETDAGTETIRIPALPAVITCDLRLNEPRYATLPNIMKAKKKKVDTMNAEDFGVDLTPRNEVLEVYEPPARKEGVIVEDVDQLVDKLKNEAGVI 258
BLAST of mRNA_H-paniculata_contig2316.6236.1 vs. uniprot
Match: A0A835Z8U7_9STRA (Electron transfer flavoprotein subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8U7_9STRA) HSP 1 Score: 343 bits (880), Expect = 5.670e-113 Identity = 178/256 (69.53%), Postives = 211/256 (82.42%), Query Frame = 2
Query: 38 MRVLVGVKRVVDYAVKVRIQPDKAGVELKNVKMSMNPFCENAIEEAVRLKESKNASEIVAVSIGPKAAADTIRTALAMGADRGVHVLTDDSIRTDQQLEPLTVAKILKKVVEEQKADLVLLGKQSIDGDCSLTGPMLAGMLGWPQATFAAKITVQDSGQKLEVERETDTGTQILSVPLPAVVTADLRLNEPRYATLPNIMKAKKKQVDVMEAAGMDIDLTPQNVVTEVVPPPARKGGVFVENVDELLDKLKNEAGV 805
MRVLV VKRVVDYAVKVR++PDK VEL+NVKMSMNPFCENA+EEAVRLKE+K A+EIVAVS+GPK A +T+RTALAMGADRGVH++TD +R DQ+L+PL VAK+L+ VV+E K DLVL+GKQ+IDGD TGPMLAG+LGWPQATFAAK+ V DS +++ VERETDTGTQ L + LPAVVTADLRLN PRYATLPNIMKAKKK + +AA +DL P+N VT V PP R G VE+VD+L+ KLK + V
Sbjct: 1 MRVLVAVKRVVDYAVKVRVRPDKTAVELQNVKMSMNPFCENAMEEAVRLKEAKLATEIVAVSVGPKQAQETLRTALAMGADRGVHIVTD--MRADQELQPLAVAKLLRTVVDEVKPDLVLMGKQAIDGDNCQTGPMLAGLLGWPQATFAAKLEVADSKKEVTVERETDTGTQKLQMGLPAVVTADLRLNAPRYATLPNIMKAKKKPIATRDAAAAGVDLAPRNKVTNVTDPPPRAAGAVVESVDDLVAKLKADGLV 254
BLAST of mRNA_H-paniculata_contig2316.6236.1 vs. uniprot
Match: A0A7S2CKC0_9STRA (Electron transfer flavoprotein subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CKC0_9STRA) HSP 1 Score: 341 bits (874), Expect = 6.240e-112 Identity = 173/265 (65.28%), Postives = 212/265 (80.00%), Query Frame = 2
Query: 14 TGKHHPDTMRVLVGVKRVVDYAVKVRIQPDKAGVELKNVKMSMNPFCENAIEEAVRLKESKNASEIVAVSIGPKAAADTIRTALAMGADRGVHVLTDDSIRTDQQLEPLTVAKILKKVVEEQKADLVLLGKQSIDGDCSLTGPMLAGMLGWPQATFAAKITVQDSGQKLEVERETDTGTQILSVPLPAVVTADLRLNEPRYATLPNIMKAKKKQVDVMEAAGMDIDLTPQNVVTEVVPPPARKGGVFVENVDELLDKLKNEAGVL 808
T H P M+VLVGVKRV+DYAVKVRI DK GVEL NVKMSMNPFCE A+EEA+R+KE K A+EIVAVS+GPK A + IRTALAMGADRGVHV TD +R DQ+L+PL VAK+LK++VE++ D+VLLGKQSIDGDC+ TGPMLA MLGWPQAT A+++T D G + ERETD GT+++ V P VVTADLRLNEPRYA LPNIMKAKKK+++ ++AA + +DL+P+ V E+ PP R G+ VE+V L+DKLKNEA V+
Sbjct: 2 TSPHPPSKMKVLVGVKRVIDYAVKVRIAADKKGVELANVKMSMNPFCEIAVEEAIRMKEGKTATEIVAVSVGPKNAQEQIRTALAMGADRGVHVTTD--MRLDQELQPLAVAKLLKEIVEKEAPDVVLLGKQSIDGDCAQTGPMLAAMLGWPQATMASELTFADGG--VTAERETDNGTEVIQVGTPLVVTADLRLNEPRYAKLPNIMKAKKKKIEAIDAASLGVDLSPRIEVVEMNDPPTRAAGIVVEDVTALVDKLKNEASVI 262
BLAST of mRNA_H-paniculata_contig2316.6236.1 vs. uniprot
Match: A0A7S2H2C8_9STRA (Electron transfer flavoprotein subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H2C8_9STRA) HSP 1 Score: 335 bits (860), Expect = 8.670e-110 Identity = 167/257 (64.98%), Postives = 209/257 (81.32%), Query Frame = 2
Query: 38 MRVLVGVKRVVDYAVKVRIQPDKAGVELKNVKMSMNPFCENAIEEAVRLKESKNASEIVAVSIGPKAAADTIRTALAMGADRGVHVLTDDSIRTDQQLEPLTVAKILKKVVEEQKADLVLLGKQSIDGDCSLTGPMLAGMLGWPQATFAAKITVQDSGQKLEVERETDTGTQILSVPLPAVVTADLRLNEPRYATLPNIMKAKKKQVDVMEAAGMDIDLTPQNVVTEVVPPPARKGGVFVENVDELLDKLKNEAGVL 808
MRVLVGVKRV+DYAVKVR+ DK+GVEL NVKMSMNPFCE A+EEA+RLKE K A+E++AVS+GPK A + IRTALAMG DRGVHV TD +R DQ+L+PL VAK+LK+VV ++ D+V+LGKQSIDGDC+ TGPMLA +L WPQ TFA+K+T+ D +EVERETD GT+++ + +PA++TADLRLNEPRYATLPNIMKAKKK++ ++AA M ++L P VT V P AR G+ VE VD+LLDKL+NEA +
Sbjct: 10 MRVLVGVKRVIDYAVKVRVAGDKSGVELSNVKMSMNPFCEIAVEEAIRLKEKKIATEVIAVSVGPKQAQEQIRTALAMGCDRGVHVTTD--LRLDQELQPLAVAKLLKEVVLNEEPDMVILGKQSIDGDCAQTGPMLAALLNWPQGTFASKVTMSDDLSSVEVERETDNGTEVIDLKMPALITADLRLNEPRYATLPNIMKAKKKKIQSIDAASMGVNLEPGYQVTGVNEPAARAAGIKVETVDDLLDKLRNEASCI 264
BLAST of mRNA_H-paniculata_contig2316.6236.1 vs. uniprot
Match: A0A7S3PSZ8_9STRA (Electron transfer flavoprotein subunit beta n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PSZ8_9STRA) HSP 1 Score: 331 bits (848), Expect = 3.700e-108 Identity = 167/257 (64.98%), Postives = 209/257 (81.32%), Query Frame = 2
Query: 38 MRVLVGVKRVVDYAVKVRIQPDKAGVELKNVKMSMNPFCENAIEEAVRLKESKNASEIVAVSIGPKAAADTIRTALAMGADRGVHVLTDDSIRTDQQLEPLTVAKILKKVVEEQKADLVLLGKQSIDGDCSLTGPMLAGMLGWPQATFAAKITVQDSGQKLEVERETDTGTQILSVPLPAVVTADLRLNEPRYATLPNIMKAKKKQVDVMEAAGMDIDLTPQNVVTEVVPPPARKGGVFVENVDELLDKLKNEAGVL 808
MR+LVGVKRV+DYAVKVR+ PDK GVELKNVKMSMNPFCE A+EEAVRLKE+ E+VAVS+GPK A +TIRTALAMGADRG+H+ TD +RTDQ+L+PL V+K+LK +VE++ D+V+LGKQ+ID D + TG MLAG+L WPQATFA+K+ V+D + L V RE D G Q LS+ LPAV+TADLRLNEPRYATLPNIMKAKKK++D ++A + +DL+P+ V +V PP R G+ V+ VD L+DKLKNEA V+
Sbjct: 1 MRLLVGVKRVIDYAVKVRVTPDKTGVELKNVKMSMNPFCEIAVEEAVRLKEAGIVKEVVAVSVGPKQAQETIRTALAMGADRGIHITTD--MRTDQELQPLAVSKLLKSIVEKETPDIVVLGKQAIDDDSNQTGQMLAGLLDWPQATFASKVKVED--KNLTVTREIDGGVQTLSMTLPAVITADLRLNEPRYATLPNIMKAKKKKIDTIKAEDLGVDLSPRLKVVKVEDPPVRSAGIMVDGVDALVDKLKNEASVI 253
BLAST of mRNA_H-paniculata_contig2316.6236.1 vs. uniprot
Match: A0A7S2WVS0_9STRA (Electron transfer flavoprotein subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVS0_9STRA) HSP 1 Score: 331 bits (848), Expect = 5.050e-108 Identity = 166/258 (64.34%), Postives = 209/258 (81.01%), Query Frame = 2
Query: 35 TMRVLVGVKRVVDYAVKVRIQPDKAGVELKNVKMSMNPFCENAIEEAVRLKESKNASEIVAVSIGPKAAADTIRTALAMGADRGVHVLTDDSIRTDQQLEPLTVAKILKKVVEEQKADLVLLGKQSIDGDCSLTGPMLAGMLGWPQATFAAKITVQDSGQKLEVERETDTGTQILSVPLPAVVTADLRLNEPRYATLPNIMKAKKKQVDVMEAAGMDIDLTPQNVVTEVVPPPARKGGVFVENVDELLDKLKNEAGVL 808
TMR+LVGVKRV+DY KVR+ +K+GVEL NVKMS+NPFCE A+EEAVRLKE A+EIVAVS+GPK A + IR+ALAMGADRGVHV TD +R DQ+L+PL VA++LK+VV+++ LV+LGKQSIDGDC+ TGPMLA +LGW Q TFA K+ + + +VERETD GT+ L + LPA++TADLRLN PRYATLPNIMKAKKK+V+ ++AA M +D+TPQ V EV PPAR+ G+ V +VD+L+DKLKNEA V+
Sbjct: 7 TMRILVGVKRVIDYGAKVRVAANKSGVELGNVKMSINPFCEIAVEEAVRLKEQGVATEIVAVSVGPKQAQEQIRSALAMGADRGVHVTTD--MRLDQELQPLAVARLLKEVVDKEDPQLVILGKQSIDGDCAQTGPMLASLLGWAQGTFACKLDISEDKSSCDVERETDNGTETLKLNLPALITADLRLNLPRYATLPNIMKAKKKKVETLDAASMGVDITPQLEVVEVSDPPARQAGITVGDVDDLVDKLKNEASVI 262
BLAST of mRNA_H-paniculata_contig2316.6236.1 vs. uniprot
Match: B7FQS4_PHATC (Electron transfer flavoprotein subunit beta n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQS4_PHATC) HSP 1 Score: 330 bits (846), Expect = 7.410e-108 Identity = 171/259 (66.02%), Postives = 208/259 (80.31%), Query Frame = 2
Query: 38 MRVLVGVKRVVDYAVKVRIQPDKAGVELKNVKMSMNPFCENAIEEAVRLKESKNASEIVAVSIGPKAAADTIRTALAMGADRGVHVLTDDSIRTD-QQLEPLTVAKILKKVVEEQKADLVLLGKQSIDGDCSLTGPMLAGMLGWPQATFAAKITVQDSGQKLEVERETDTGTQILSVP-LPAVVTADLRLNEPRYATLPNIMKAKKKQVDVMEAAGMDIDLTPQNVVTEVVPPPARKGGVFVENVDELLDKLKNEAGVL 808
M++LVG+KRVVDYAVKVR+ K V+L NVK SMNPFCE A+EEAVRLKESKNASE+VA+SIGPK +TIRTALAMG DRG+H+ TD +RTD L+P +A++ +K+VE++K+DLVLLGKQ ID DC TGPMLAGM+GWPQ TFAAK+ V+D G L VERETD+GT+ + V LPAVVT DLRLNEPRYATLPNIMKAKKK V+ ++A M +DL P N V E++ PP RK G+ VENVD L+DKL+NEA V+
Sbjct: 1 MKILVGIKRVVDYAVKVRVS--KGTVDLANVKQSMNPFCEIAVEEAVRLKESKNASEVVALSIGPKQCTETIRTALAMGCDRGIHIQTD--LRTDYMDLQPFAIAQLFQKIVEKEKSDLVLLGKQGIDSDCGQTGPMLAGMMGWPQVTFAAKVEVKDGG--LLVERETDSGTETIQVKSLPAVVTCDLRLNEPRYATLPNIMKAKKKPVETLKAEEMGVDLVPHNQVLEILEPPPRKEGIMVENVDSLIDKLRNEAQVI 253
BLAST of mRNA_H-paniculata_contig2316.6236.1 vs. uniprot
Match: A0A7S4AC97_9STRA (Electron transfer flavoprotein subunit beta n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AC97_9STRA) HSP 1 Score: 330 bits (845), Expect = 1.160e-107 Identity = 169/259 (65.25%), Postives = 207/259 (79.92%), Query Frame = 2
Query: 38 MRVLVGVKRVVDYAVKVRIQPDKAGVELKNVKMSMNPFCENAIEEAVRLKESKNASEIVAVSIGPKAAADTIRTALAMGADRGVHVLTDDSIRTD-QQLEPLTVAKILKKVVEEQKADLVLLGKQSIDGDCSLTGPMLAGMLGWPQATFAAKITVQDSGQKLEVERETDTGTQILSVP-LPAVVTADLRLNEPRYATLPNIMKAKKKQVDVMEAAGMDIDLTPQNVVTEVVPPPARKGGVFVENVDELLDKLKNEAGVL 808
M+VLVGVKRVVDYAVKV++Q K V L NVKMS+NPFCE A+EEA+RLKE+ A E+VAVSIGPK +T+RTALAMG DR +H+ TD +RTD +L+P +AK+ +K+V+++K+DLVLLGKQ ID DC TGPMLAG LGWPQ TFAA +T D G+ + VERETD+GT+ + +P LPAVVT DLRLNEPRYATLPNIMKAKKK+VD ++A + +DLT N V EV PP RK GV VE+VDELLDKL+NEAGV+
Sbjct: 1 MKVLVGVKRVVDYAVKVQVQ--KGSVSLNNVKMSLNPFCEIAVEEAIRLKEANAAEEVVAVSIGPKQCTETLRTALAMGCDRAIHISTD--MRTDYMELQPYAIAKMFQKIVDQEKSDLVLLGKQGIDSDCGQTGPMLAGFLGWPQVTFAANLTPDDGGKGITVERETDSGTETIKIPSLPAVVTCDLRLNEPRYATLPNIMKAKKKKVDTIKADDLGVDLTTYNEVVEVFAPPPRKQGVMVESVDELLDKLRNEAGVI 255
BLAST of mRNA_H-paniculata_contig2316.6236.1 vs. uniprot
Match: A0A7S2EH51_TRICV (Electron transfer flavoprotein subunit beta n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EH51_TRICV) HSP 1 Score: 329 bits (843), Expect = 4.040e-107 Identity = 176/261 (67.43%), Postives = 213/261 (81.61%), Query Frame = 2
Query: 38 MRVLVGVKRVVDYAVKVRIQPD-KAGVELKNVKMSMNPFCENAIEEAVRLKESKNASEIVAVSIGPKAAADTIRTALAMGADRGVHVLTDDSIRTD-QQLEPLTVAKILKKVVEEQKADLVLLGKQSIDGDCSLTGPMLAGMLGWPQATFAAKITVQDSGQKLEVERETDTGTQILSVP-LPAVVTADLRLNEPRYATLPNIMKAKKKQVDVMEAAGMD-IDLTPQNVVTEVVPPPARKGGVFVENVDELLDKLKNEAGVL 808
MR+LVGVKR VDYA KVR+ PD K+GV+L VKMSMNPFCE A+EEAVRLKE+K ASE+VA+S+GPK ++T+RTALAMG DR VHV TD +R D +L+PL+V +I ++VVE++K DLVL+GKQ ID D TGPMLAG+LGWPQATFAAK+ V+D G L VERETD+GT+ + + LPAVVT DLRLNEPRYATLPNIMKAKKK+VDV+ A +D +DL P+N V EV PPARK GV VE+VDELLDKL+NEA V+
Sbjct: 14 MRILVGVKRAVDYAAKVRVNPDGKSGVDLSTVKMSMNPFCEIAVEEAVRLKEAKAASEVVALSVGPKQCSETLRTALAMGCDRAVHVQTD--LRGDYMELQPLSVTRIFERVVEKEKPDLVLVGKQGIDSDAGQTGPMLAGLLGWPQATFAAKVEVEDGGG-LTVERETDSGTETVRLKSLPAVVTCDLRLNEPRYATLPNIMKAKKKKVDVLNAEDLDGVDLKPRNEVLEVYEPPARKEGVMVESVDELLDKLRNEANVI 271 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2316.6236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2316.6236.1 >prot_H-paniculata_contig2316.6236.1 ID=prot_H-paniculata_contig2316.6236.1|Name=mRNA_H-paniculata_contig2316.6236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp MRVLVGVKRVVDYAVKVRIQPDKAGVELKNVKMSMNPFCENAIEEAVRLKback to top mRNA from alignment at H-paniculata_contig2316:12342..20843+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2316.6236.1 ID=mRNA_H-paniculata_contig2316.6236.1|Name=mRNA_H-paniculata_contig2316.6236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8502bp|location=Sequence derived from alignment at H-paniculata_contig2316:12342..20843+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2316:12342..20843+ >mRNA_H-paniculata_contig2316.6236.1 ID=mRNA_H-paniculata_contig2316.6236.1|Name=mRNA_H-paniculata_contig2316.6236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig2316:12342..20843+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |