mRNA_H-paniculata_contig2316.6235.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2316.6235.1
Unique NamemRNA_H-paniculata_contig2316.6235.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2316.6235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2316contigH-paniculata_contig2316:4025..11294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size253
Cds size249
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2316.6235.1prot_H-paniculata_contig2316.6235.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2316 4027..11294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.988309-CDS-H-paniculata_contig2316:4026..40691622929653.988309-CDS-H-paniculata_contig2316:4026..4069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2316 4027..4069 -
1691480952.9281588-CDS-H-paniculata_contig2316:4026..40691691480952.9281588-CDS-H-paniculata_contig2316:4026..4069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2316 4027..4069 -
1622929654.0039794-CDS-H-paniculata_contig2316:4353..45021622929654.0039794-CDS-H-paniculata_contig2316:4353..4502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2316 4354..4502 -
1691480952.9367108-CDS-H-paniculata_contig2316:4353..45021691480952.9367108-CDS-H-paniculata_contig2316:4353..4502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2316 4354..4502 -
1622929654.018361-CDS-H-paniculata_contig2316:11237..112941622929654.018361-CDS-H-paniculata_contig2316:11237..11294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2316 11238..11294 -
1691480952.9445107-CDS-H-paniculata_contig2316:11237..112941691480952.9445107-CDS-H-paniculata_contig2316:11237..11294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2316 11238..11294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2316.6235.1

>prot_H-paniculata_contig2316.6235.1 ID=prot_H-paniculata_contig2316.6235.1|Name=mRNA_H-paniculata_contig2316.6235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
RAPGVEALSGGRHHINHHHATEVVEVGPIKQSDQNPRWKEPKEAKKILAP
KTTIGCLDVPVRVTTAGFRFEPTTGAISWPRVA
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mRNA from alignment at H-paniculata_contig2316:4025..11294-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2316.6235.1 ID=mRNA_H-paniculata_contig2316.6235.1|Name=mRNA_H-paniculata_contig2316.6235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7270bp|location=Sequence derived from alignment at H-paniculata_contig2316:4025..11294- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGCGCCAGGTGTAGAGGCCCTAAGTGGAGGAAGGCATCATATTAACCA
CCACCACGTATGTATGGATAGTGCCAGGTGGAGTGAGGCCTTGCTGTGGT
TGTGGTTGTAGTCGTCGGCGTCCCTCGCGACGCTGCGATGGCGTACTTTT
GAGTGAGGGATGTCGTCGACTATGCTTCGCTGCTGTTTGGCGCTGGTTCA
TATTTCGCTAGACTGATGAATAAATAAGAGGGTACTGTATTTAGTTATCG
TCTGTTTGATATTATTGTGAGAGATTTAGTATGTTTGATGGGGTACACTG
AAGGAACAGAGCACTTCACCACCCGGACAAGTACGAATGGAGCATTCGCA
ATTATCTCGAACTATCATTTTTTGCCTTGAGTAGACACTTCTCTGTTCTA
GAAGTTTATGAACGGGTTACACTACAGACGGTGACCAGATGGTCGTATAC
TCGGCGAACAGTCATACATGCATATCCTCTTTATTTTCTGGATCGTACTG
TATATATTAAATACTTTATCTGCCCGAGCTTTTCGATGCTCCATGGTATA
TCGAGTACACTGTACATTATTCCCATCACATGGACAGCTTCCGCAACTCA
ATCAGATATAGTATTCATTCCAGATTTCTCGTATTTATTGGTGCCTTTTA
TTCGTATTTGTCCGGGGGGTGGAACAATTCATTGTAGCCATCTGTTGGAT
CGGTTTGCGACGATATTTTCTGAGTGCAATTCTTTCACCCCTCGGACAAA
TACGAATACTTGCAAATGGTTTTTACAAAAAATTGAAAGTATTCCCCTGA
GTTTCAGAATAAGCTTGTGTATTCTATGTGCCCCGGACCATCCACGAGCG
CTAATAATACTCGATAATCGAATGGACAGGGGTAGATATTTTTTCTATTC
GCCCGCTCATTCTAAAACTCAGGGGAATACTTTCTTTTTTTTGTGATAAC
CATTTGAAAGTATTCGTGTTTGTCCGGGGGGCTGAATGTTTTTATTTGCC
AATAGCCAAGTTCTAGTCTGCACATGGTCGGAAGGCAAACATAATATTTT
AGAGGTATGTGCTGCCCCTCCTGATTCGAAACTTCTTCTTGGTGGATTTC
GTAACGGTATTAGACCTAAATGAGTACAACTGGACATCATTTAAGTCATC
TGTTCACTAGAGCCACTCCGTTGAAACAAAATCATACACCCATCACTGCT
ACTGTGGTTGTCGACGGTGTCTTGGCTACTGCGTTTTTGTATCTACAAAC
ACGCTGTAAAATAAGATAAGGCCCCATAGCAAGTACATTTTTATGTGTGG
AGAGCACGTTCCTGGCATTCGTGGGATTCCTGAACCCTCGTCCCCTAGGC
AACATTCGGACCAGCTCTCTAGCTGGCTCGACCCCTGAGGGCCATTCCTA
CCTACGAGAGGTCTCTCACGACATATCAAAGCTGTGTGTGCTCCACATTA
TATCCCCGAACCTAGACCGAACGTAGAGCAGAGCAGCGCGCCCACGGAAG
CCACTCTACCGTGGGAGAGTCGTGTTTTCATTGGCATCACCGGTATGTTT
GACTCGAGATGATGTGTGATCTCAAACCGGTCATGGTTTTTACTTCCACA
CAGCATATCAGCAGTGTATCCAAACTGTGAACATAGCAGGCAGTCAGTCA
AAGAGAGACGAAGTATTTTTACAAGGATGTCGTCACAGAGGCGGCGTAAC
AGCTAGCTCGGCTGACTGTCAAACCGTAAATACAAAATCGGCGCCGACGA
GCGCCAAGAAGGGACATAGCACGCTCGGTGTACTCGTTCTGGGCAGCCAC
TTTACCATCATAGTTACCGACAACACCACCCAGCACTGCCAACATTACAA
CCGACCTCATCGTGACCCAACACATGGGTCAAAACCGTATTGCGGTCTCA
GCGACCTGCGGAGTTTTGCCGAGAATCGGCGATATTCGCAGGTGATACTT
CCAGCGATCGGTGGGAACTCGTGCTGGGGCGGCAGCGTAGGCGGCTCAAT
CGCGTGCAATGGCTGGTGAGACCGTTCGGGTTGTAGGGTTGCATGCAAAC
TCGTGCTGGACGTAGCTAGTGGTGTTCAGAGTATGGGGGACTTTTGAGTC
GGGGTCAATTCGAGACATCGAATAGTCCGCTCCCATATTCGACCATAAAT
AAACGATACATATCTATCACGCTATGCTACGAGTATATCCAACAGGTCCT
ATGGATATCTCACAGAATCGTGACCCTTACGTTTGCTAATTTCCGATACA
ACAGCGAATTTGGTTGCCTGTTCCCCTACACGAGAATCTTACCTGAAGTT
GCTGGAGGACACGTTTCAGGCTCTCCAAGTAATTGGTTTGACTTTGAACT
CGGCTAAGATTTGGACCAGCCGAGGTTAAGTACTCGGGCCACGTACTGTC
AGCACAAGGAATCAGTGTGGGTACAGATAGGATACAGGCTACCTTAGACA
CCGAATAAAAATGACCATAAAAGGGTTTCGATCTGTATTAGAGAATATAC
ATTTCGTGCTAAAGTTCATCCCAAACCGCCCAGCCGTAATTGAGCCACTC
GTAAGTCTCACTCGCAAGGAAATTGCCGGGGTTTTAAAACCTCAAGCGCA
TTGGGGAGCAGCGCAAGACAATCCCTTCGCGGAAATGAAACGATTGCACG
CGTCGGCACTGATATTGCATTTCCCCGATCTCTCGGTAGATTTTGTATGA
ATGTAGACGCAAATGATAGCGACGCCGGAGCGTTTCTGGCACAAGAAAAT
GATGCTGGTGAAGTAGGCATTGTAGCTTACTTCAGCAAACGGTTTCGGCT
AGCCAAAGTCACTATCCAGTAACCCAGAAGGAGTGTTATGCGGTAGTGCT
AGCAATTAACCACTTCAGACCATACCTTTGGGGCAGACACTTTACCTGCA
TCATCGATCACGCTGCGTTGATGTACCTATGTACCATGCAGGACACGAGA
AACATGCTGACTCGCCAGGCGATAGCGCTGCAGTCGTGTGATTTTATGGT
ACAGCACAAACCGAGGAAAATGAGTGTGATTCCCGACGCCTTTTCCCGGC
TGTTTCGATTTGAAGCCAAAGAGGAAGCAGTAGCGCCAATATTAGCTCCC
ATTTACATAAATGTGCTCGATAGCCTAACGCTATAGGTGGGACAGCCACA
CCGGCGGTATCACCTGTTAACAGACAAACTGGGCAATGTTGAACCAGTCA
GGAACGACCGTGAGCTAGTTAGCAAAAGCCCAATTTTCGTGAGCTCAACG
TAAATGTTCACAACGATAGACCAAACTACGACAAGCACCATCCGCGGGTT
TGAACCATATTTCCAAGTACTTGGAGGATCCAAAAAATTCTCTGCCAAGG
GACGAGACGGTGCCATCCATGTCGCACAATTTCGAGCAGGATGGTTTGCT
ATTCAGGTCGTATTTGCCTGGACATTTAGGAAAACGTAGTACGTTTCGTG
ACCAACTAGTAGTGCCCCACGCACTAGAAGGAGTAGTGCTCCTCGCCTTC
CACGATCATGCCATGTCGGGCGGATATTAAGCGTATAAGCTAACTTTTGA
CAAGGTCTGGGAGCGATTTTAGTGGCCTACGTTGCATCGCAATGTGAAAA
ATTCGTGTCACGACTTTCAAGCCTGTCAAAGGCGGGAAACGGCACATAGT
CGTGCGAAAGTGTCAGTCGGGCATATGCCAGTGAGGCGGCCGTTCAAGCG
AGTGTCAGTCGATCTAATAGAGTCCAAACTATTTCCCTCTCCCCAACTGA
GACCTGGTGTAAGTATTTGCTTTCACCTATCGACTATCTCACTCGATTTG
CGTTACTAATTCCCGTATTGAACAAAGCGACCGAGACCGTAGTAGCAGCC
ATTACAGAAATAGTAGTCGGCATTTTTGGTCCTCCGGAGATCCTGCGTTC
GGACCAGGGAAGAGAATTCGAAAATCAGATCGTCCTTCAGCTACAGAAGA
TATTAGAAAATAGGAAAATAGAAACCACACCTTATCGTCCACAGGGGATT
TCTGTATCAGAACCGATTCACTCGTCCATACATGCTACGTTAGCGATGTA
CAGCAAAATTTCTCCGGTGTATAGGCATCTCTCTTGCCGTTCTTGCAGCC
GGCCCACGTTACAGGGTTTAGCGCGACAATGCACGAGGCACCACTCTTCC
TGGTGTTTGGTCGACAAGATCAGTTGCCAATAGATATTTTTGGCGTTCCC
CACGAGGGGCGAACTACTGATACAAAGGAATTCTCAACAAACTCGGGAGA
ACCTATAGTTAGCTTTCGAAGTAGCCCGCCGTATTTTAGGTGAACGGGCA
GATAAACAGGCTAAAACTAACAGCGACTTCGTGCAGTACCCAGTATTTCA
AACGGGGACTCAAGTGCTAGTGTACACGCCTTACCAAGACTCCGACGGGT
CGAATCCAAAACTGTTGAACCCATGGCGCGGACCGTACATGATCTGTTCT
GAGCTCTCTCCGGGGGTATATCGGGTGAGATTGCAAGACGATTGGACAGA
ATTGTCGGTCCACATAGCTATATCATCGTCGGAAAAGACCACCGTCGCCT
GTCTTTGGCAAATTAGGAGATACGTTGTTGGGCAAGCCTAATCTTTACCC
ACCCTGGATCGCCCGTAGCTGATTCAACCATGTGTCGGGTCATACAAAAT
TGACAGTATAGGGGGGCACCAATGAGAGTAAGGAAGAAGTGGTCCTCGCA
ACTATCGTTAGGGGCTGCGATTAGCAGGTTATGGGCCACCATACGACCTG
TGGAATCGCGTGCATGAAGTACCCCAATGTCAAGGGATGGTGGCAGCTTA
CTGAGCCACGAATGAAGTCGATGTAACCACTTCCCCTCCCTCGAAGTTAA
AGTCGAAGTCGAACGAGGACTCCAACTCAAAATAGGCAAAGAAATCGAAA
TCGGACAAGAAATAAGTTCGAGGTCTGCATAATTCTTGGGGGAATAACAG
GTGGACTGATTTTGCATGTTACCTGTTAAGCTGCAGTAGTGTGGAGTGAC
TATGATTGCGCTGCACCTTAGTTTACCATGGTGGGCGCTGCTCAACGGAT
AATGGTCAGCGGAGCCTTATTATTACGCTTGCAACGAAGAATGTTCGCAG
TTATGACTAACACTACAGCGTGCCTGGACCACACGCTGGGTGTAGAGTAC
CCTTTTTGGTGGATGTTACGGTGATTAAAGGCTATCGCCGTCCCACTTAG
TGGATGTAACGGTGATTAAAGGCTACCGCCATTCCACTTGGTGGATGTAC
CAGTGATTGAAGGCTATCGCCACTCCTTTTGTTGGATGTAACGGTGATTG
AAGGCTATCGCCGTTCCCTGGTGGATGTAACGATGGTTAAAGGCTATCAC
CATTCCACTTAGCGGATGTAATGGTGATTAAAGGCTACCGCCGTTACATT
TGGTTGATGTAACGGTGATTAAAGGCTGTCGTCGTTACATTTAGTGGGTG
TAACGGTGGTTAAAGGCTATCGCCGTTAAACTTAGTGGATGTAACGGTGA
CTGAAGGCCATCACCGTTTCATTTATAGATCTGAGGTATGACTTGTTCCT
CGCGCTGTTCATCTGGGGAAGCCGGATTTGGCACCACCAGACAGGCAGCT
GCACGGGATAATCCAAATCAGGTCTTACCTCGATGACGTTATTTGTTTTA
GAGGCGCCGCATGGGCGACATACGCCAGACTTGCCCTTTACTTTAGCTGT
TTGCCGGAACAACCCCCGGGGTAGCGCCATCTCTCGGACGATGTGATACC
TGAGTTAATGTCTTCGCGCCTAGATTGGAAAGGAGCTTCCATTGGTCGGT
TGTTGCAATCTTACGAGCGAGTACTTGGTCTCGATCGCCGCAGTAAGGTT
AATGATGTACAAGAATGTTGTACAATAGTCCATAATTGGCATTAAGTCTG
GGCAAACCTGATGACCAGGGGCGTACAAGCTCTGTTGAATGAGCAATCCC
ATGTGTTTGGGGACCGTCAGCGAGTGCTTCCGTTTCGTTCCGGGGCTCAC
CTCGTGATTGCCTTAGCTTGTTACACAGCCTTGAGGTCCAACAAAGGGGG
CGGTGATGTAGAGAGCACGTTCTTGACGTTCCTGGGATTCCTGAACCCCG
GTCCCCTACGCAACATTTGGAGGCGTGTCTGCCCATTTTCGGGCCAGCTC
TCCAGCTGGCTCGACCCCTGATGATCACTCCTACCTTGGAGAGGTCTCTC
ACGACAGATGAAAGCTGTGTGTGCTCCACATTATATCCCCGAACCTAGAC
CAAACATAGAGCAGATCAGCGCGCCTGCAGAAGCCAGTCCATCGTGGGGG
CGTCGTGTTCTCATGTCGGATCCGGATAGACAATACTTGAAGGTAAATTG
GCTATTCTGATAACCCTGTTTATCCAACGTTAACCGCCTGGTGTTACTTC
GATTTCTTTAAGTCCTATTAACTACTGTGGCGTGTTGTTTGATACCCGGG
TATAGGATGCGCCAGTTCTTTATACCGTGCTTAATAAGATGGATGAAAGA
AGAAAAACTAGCAATCTATGTCAAAGGAAAAGTACGCGGCTGGAAACCAA
TTTCGGTCACAGCACACCTCAATCAAAAACAACACAATATCATAGCAGGC
GATCTACAGGCAAATTGCACAACATACAGTCGTACGAATTTATTGCTCAC
TGCACCATACCACTACACCCGTTCGCATTGTTCACCATCTCGACCCAAAA
TGAACGAATGCCACGCTGGATCGAAAACTCATATTCGTGCATTTCAGTCC
TCGCATGCTCTCTGTGCTGACTCTTCGACCCTGCTAAAGCAGGCCACAGA
AGTTGTCGAGGTGGGACCAATCAAGCAAAGTGACCAGAATCCTCGCTGGA
AAGAACCGAAGGAAGCCAAGAAAATCTTGGCTCCGAAGACCACTATAGGC
TGTCTGGATGTGCCCGTACGTGTGACAACTGCCGGCTTCAGGTAAAGACG
TCCTGCACTCACTCGAAAAGTATTCAGTCAGCCAAGGCATTCATGTTGTC
GAATACACTGAAGAAGCAGAAACTATAGCAGGCATTCAAGTCAACTATCA
GGTATTAAGGGTCAAGCTCGAGGGTGCTTAGAAAGCGACGAAGATGCGTC
TCCGTAAGGATCGGTGATTGCTTTGGTAGGCGCACGACGACGGACTGCTA
ACCCTACAATCTGCGGTGAATATATACATTTTCCTCAGTCCAGTTTCCGT
TCATTGTTTTTCATCTTGGCTACAGATTCGAACCCACAACTGGGGCGATT
TCTTGGCCTCGCGTTGCTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2316:4025..11294-

>mRNA_H-paniculata_contig2316.6235.1 ID=mRNA_H-paniculata_contig2316.6235.1|Name=mRNA_H-paniculata_contig2316.6235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig2316:4025..11294- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGCGCCAGGTGTAGAGGCCCTAAGTGGAGGAAGGCATCATATTAACCA
CCACCACAGAGCGCCAGGTGTAGAGGCCCTAAGTGGAGGAAGGCATCATA
TTAACCACCACCACGCCACAGAAGTTGTCGAGGTGGGACCAATCAAGCAA
AGTGACCAGAATCCTCGCTGGAAAGAACCGAAGGAAGCCAAGAAAATCTT
GGCTCCGAAGACCACTATAGGCTGTCTGGATGTGCCCGTACGTGTGACAA
CTGCCGGCTTCAGGCCACAGAAGTTGTCGAGGTGGGACCAATCAAGCAAA
GTGACCAGAATCCTCGCTGGAAAGAACCGAAGGAAGCCAAGAAAATCTTG
GCTCCGAAGACCACTATAGGCTGTCTGGATGTGCCCGTACGTGTGACAAC
TGCCGGCTTCAGATTCGAACCCACAACTGGGGCGATTTCTTGGCCTCGCG
TTGCTATTCGAACCCACAACTGGGGCGATTTCTTGGCCTCGCGTTGCT
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