mRNA_H-paniculata_contig2315.6230.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2315.6230.1
Unique NamemRNA_H-paniculata_contig2315.6230.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2315.6230.1 vs. uniprot
Match: D7G2S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.930e-42
Identity = 76/117 (64.96%), Postives = 92/117 (78.63%), Query Frame = 1 
Query:    1 MKVIGFLMVCLTAVSGFMVPS-QRVVTPTRSVVRSSSSPVHMGLNEDFQKAAATASVAVLTAAPAIATEGTGEPLGFNEGKAVIVPLLVLLAINLLFNNWAKDQPEGDFFSEYDTRK 348
            MK +GF +VCLTAVSGF+ P+  R+    R    ++++P+ MGL ED QK A  ASVAVLTAAPA+ATEGTGEPLGF   +AVIVPL  L++INLLFNNWAKDQPEGDFF+EYD R+
Sbjct:    1 MKFLGFFVVCLTAVSGFVAPTGPRLSAAVRP--STAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 115
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BLAST of mRNA_H-paniculata_contig2315.6230.1 vs. uniprot
Match: A0A835Z064_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z064_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.580e-17
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:  148 AAATASVAVLTAAPAIATEGTGEPLGFNEGKAVIVPLLVLLAINLLFNNWAKDQPEGDFFSEYDTRK 348
            A AT S A+L+AAPA+ATEGT E LG +   A  VPL V+ AINL+F  WA+ QPEG+FF EYD R+
Sbjct:   42 AIATVSAALLSAAPALATEGTSEALGIDNPLAFWVPLTVIFAINLIFFQWARTQPEGEFFGEYDERR 108
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BLAST of mRNA_H-paniculata_contig2315.6230.1 vs. uniprot
Match: A0A835ZAY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.120e-15
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  148 AAATASVAVLTAAPAIATEGTGEPLGFNEGKAVIVPLLVLLAINLLFNNWAKDQPEGDFFSEYDTRK 348
            A ATAS A+LT+AP +ATEGT E  G +      +PL V++ INL+F  WA+ QPEG+FF EYD R+
Sbjct:   45 AIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERR 111
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BLAST of mRNA_H-paniculata_contig2315.6230.1 vs. uniprot
Match: A0A0G4F681_VITBC (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A0G4F681_VITBC)

HSP 1 Score: 62.0 bits (149), Expect = 6.670e-10
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:   97 RSSSSPVHMGLNEDFQKAAATASVAV---LTAAPAIATEGTGEPLGFNEGKAVIVPLLVLLAINLLFNNWAKDQP--EGDFFSEYDTR 345
            R + SP+ M    D       A++AV   L    A+ATEGTGEPLG +    ++    + L++ +LF NW+K+ P  EGDFFSEYD R
Sbjct:   39 RQAPSPLRMSAETDKLSKNLGAALAVSPLLAPLAALATEGTGEPLGVDSPLQLLAITAIPLSLGILFINWSKENPDNEGDFFSEYDRR 126
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BLAST of mRNA_H-paniculata_contig2315.6230.1 vs. uniprot
Match: L1JFS1_GUITC (Uncharacterized protein n=4 Tax=Guillardia theta TaxID=55529 RepID=L1JFS1_GUITC)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-7
Identity = 42/117 (35.90%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:   13 GFLMVCLTAVSGFMVPSQ-----RVVTPTRSVVRSSSSPVHMGLNEDFQKAAATASVAVLTAAPAIATEGTGEPLGFNEGKAVIVPLLVLLAINLLFNNWAKDQPEGDFFSEYDTRK 348
              L+  + A + F  P       R  TP  S+   S    ++ + E  +KA A A      AAPA A EGTGE LG ++GK +I  ++V L + LLF  +A +Q   DFF  YD R+
Sbjct:    5 ALLLALVAAAAAFTAPHSAGLRLRSATPAMSMKADS----NIRIPEGVKKALAPAIAFAGAAAPAFA-EGTGEALGVDDGKLLIPIIVVPLFVFLLFQGFAANQDNEDFFDTYDQRR 116
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BLAST of mRNA_H-paniculata_contig2315.6230.1 vs. uniprot
Match: A0A6U0YMB5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0YMB5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.260e-7
Identity = 48/115 (41.74%), Postives = 65/115 (56.52%), Query Frame = 1 
Query:    1 MKVIGFLMVCLTAVSGFMVPSQRVVTPTRSV-VRSSSSPVHMGLNEDFQKAAATASVAVLTAAPAIA--TEGTGEPLGFNEGKAVIVPLL---VLLAINLLFNNWAKDQPEGDFF 327
            MKV+  L   L A + F  PS+    P R+V +R ++    M L  D  K+ A AS     AAP +A  TEGT E LG +    +I+PLL   VL+A+NLLFN+WA+ Q   +FF
Sbjct:    1 MKVLFLLAAFLGAAAAFT-PSK----PMRTVAMRKAAVAPKMSLKSDMAKSIAVAST---VAAPLVAGATEGTNEILGIDT---LIIPLLGFPVLVAVNLLFNDWAQTQDNDEFF 104
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BLAST of mRNA_H-paniculata_contig2315.6230.1 vs. uniprot
Match: A0A7V5M5A5_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5M5A5_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 7.480e-6
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:  196 ATEGTGEPLGFNEGKAVIVPLLVLLAINLLFNNWAKDQPEGD-FFSEYDTRK 348
            AT+GTGEPLG ++ + +IV L V + + +LF +W+  Q +GD F  EYD R+
Sbjct:   82 ATDGTGEPLGIDDSRLLIVLLGVFITMLVLFISWSSKQDDGDDFVGEYDPRR 133
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BLAST of mRNA_H-paniculata_contig2315.6230.1 vs. uniprot
Match: A0A7J7IM13_9RHOD (PSII 6.1 kDa protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM13_9RHOD)

HSP 1 Score: 49.3 bits (116), Expect = 5.480e-5
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:  175 LTAAPAI-ATEGTGEPLGFNEGKAVIVPLLVLLAINLLFNNWA-KDQPEGDFFSEYDTRK 348
            LT  PA  AT+GTGEPLG ++ + ++V L + + I  LF  W+ K   + DF  EYD R+
Sbjct:   72 LTFGPAAWATDGTGEPLGIDDSRLLVVLLGIFITILALFIGWSSKQDDQDDFVGEYDPRR 131
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BLAST of mRNA_H-paniculata_contig2315.6230.1 vs. uniprot
Match: A0A7S0JMM5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Minchinia chitonis TaxID=262233 RepID=A0A7S0JMM5_9EUKA)

HSP 1 Score: 48.5 bits (114), Expect = 6.490e-5
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:  106 SSPVHMGLNEDFQKAAATASV----AVLTAAPAIATEGTGEPLGFNEGKAVIVPLLVLLAINLLFNNWAKDQPEGD 321
            SSPV MG+  DF K A +       AV+T++ A+ATEGTGE  G ++G+ + V  LV   I  L+    KD  E D
Sbjct:   30 SSPVTMGMTNDFAKKAMSVVAGVVPAVVTSSAAVATEGTGEWFGVDDGRLLAVLFLVHWGILTLWLGSYKDADEDD 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2315.6230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G2S2_ECTSI1.930e-4264.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z064_9STRA2.580e-1759.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAY3_9STRA5.120e-1553.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4F681_VITBC6.670e-1042.05Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
L1JFS1_GUITC1.270e-735.90Uncharacterized protein n=4 Tax=Guillardia theta T... [more]
A0A6U0YMB5_9STRA2.260e-741.74Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7V5M5A5_9BACT7.480e-646.15Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A7J7IM13_9RHOD5.480e-543.33PSII 6.1 kDa protein n=1 Tax=Cyanidiococcus yangmi... [more]
A0A7S0JMM5_9EUKA6.490e-542.11Hypothetical protein (Fragment) n=1 Tax=Minchinia ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2315contigH-paniculata_contig2315:1990..3719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003300.1
Exons3
Model size351
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2315.6230.1prot_H-paniculata_contig2315.6230.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2315 1990..3719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.5428607-CDS-H-paniculata_contig2315:1989..20311622929653.5428607-CDS-H-paniculata_contig2315:1989..2031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2315 1990..2031 -
1691480952.7566378-CDS-H-paniculata_contig2315:1989..20311691480952.7566378-CDS-H-paniculata_contig2315:1989..2031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2315 1990..2031 -
1622929653.5589201-CDS-H-paniculata_contig2315:2626..27191622929653.5589201-CDS-H-paniculata_contig2315:2626..2719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2315 2627..2719 -
1691480952.7651439-CDS-H-paniculata_contig2315:2626..27191691480952.7651439-CDS-H-paniculata_contig2315:2626..2719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2315 2627..2719 -
1622929653.5767798-CDS-H-paniculata_contig2315:3503..37191622929653.5767798-CDS-H-paniculata_contig2315:3503..3719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2315 3504..3719 -
1691480952.7729318-CDS-H-paniculata_contig2315:3503..37191691480952.7729318-CDS-H-paniculata_contig2315:3503..3719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2315 3504..3719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2315.6230.1

>prot_H-paniculata_contig2315.6230.1 ID=prot_H-paniculata_contig2315.6230.1|Name=mRNA_H-paniculata_contig2315.6230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MKVIGFLMVCLTAVSGFMVPSQRVVTPTRSVVRSSSSPVHMGLNEDFQKA
AATASVAVLTAAPAIATEGTGEPLGFNEGKAVIVPLLVLLAINLLFNNWA
KDQPEGDFFSEYDTRK*
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mRNA from alignment at H-paniculata_contig2315:1990..3719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2315.6230.1 ID=mRNA_H-paniculata_contig2315.6230.1|Name=mRNA_H-paniculata_contig2315.6230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1730bp|location=Sequence derived from alignment at H-paniculata_contig2315:1990..3719- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGTCATCGGATTCCTGATGGTGTGCCTCACGGCCGTGAGTGGGTT
CATGGTACCTTCGCAGCGCGTTGTGACGCCCACACGGTCCGTAGTGCGTT
CGTCGTCGTCTCCTGTGCACATGGGCCTGAATGAGGACTTCCAGAAAGCG
GCTGCTACGGCCTCAGTCGCGGTGCTCACGGCGGCACCCGCCATCGCAAC
CGAGGGGACCGGGGAGGTGCGTCCGCATGCGCATTGTATGGATGCAGAAC
GGTCGAGGCGTAGGTTACAAGGTCTTGTGTGGGCATGAACGTTTCTAGTT
TGTTTGACGGTGTAAACTTTTGCATGATCACGACGCCTTACTGTAGTGTA
AACTCGCTTCTGTACTGAGTACACAATATACAGTCAAACTCAAATGTGTC
AGTTGTGTGGGTCAGTGTGAGGCTTTCATGTCTGGATGGCATGAGTCACA
TTTGTATTGCCGGACAACGTCCTTTCGGGGCAAGGTAGAGGAAGGTTTCG
AGTTTCAAATGAGAGTCGATTGTTCCAGGTAGACCGTGACTGGCTCGTTC
ACCTGGAACTGCTCTGCTTTGCCCGTAAAAGTGGTGTGCCCTTCATGTTG
AAGACGCACCGGGTCGTCCCAGTGTCGTAATCTCATCTGCACTACTCCCA
TGTTTATGTATATGCTTTTAGTCATGATTTGTCGTGTGGCTTGACTGCGG
TGCAAACAGTTACTAAATTACAGTGCAATGTCCAAGCTGCAATTATGAGA
CCCAAAAGTTGAAGATGTGAATCGCCATGAAGTTGCCTGCAGCCTCGTGT
GCGCTGCGTATGATTGAGGTCCTGTTGCCGTCGCCCATTAGTATCCCCAC
TAACCATGTTTTACTGCAACCACCTATGGTGTCGCGACAGGCGTGTTTCT
TTCTTGTCACCAGTTTGATCTTCCCCTGACTAAACTCACGTCATATTCAT
TCTGCACCCTTCACGTGCGCGGACATGCACACGCGTCGCTCTTTTAACAG
CCTTTGGGATTTAACGAGGGGAAGGCTGTCATCGTGCCTCTGCTTGTTCT
TCTCGCTATCAACCTCTTGTTCAACAACTGGGCAAAGGACCAGGTAAGTT
CTGTTGGGTGTGTCGATTGTCTGTAAAAATAGCAAGATTTAACCCTGGTT
TTGTTCGAATTTTTAGCTGTTACAACGCATGCAGGCGCTTGCCGAAGTCT
GGTAGTGACCATAGCAGTCAGTCTGTACTGACTATAAATAGTCGTCTTCT
AGATGGAAATATCTACAGAATATGGTAGCGGTCAATACGAGCTCAAATCC
TGCCCTGCCTCCGTCGTTTTGTCGATGATCGCCATGCTAGGGGTATTTAG
ATCGTACGAAGGTGAACCAGTTTTGAATACAAGGGACAGAACGGGGCTTA
CCGTGTAAGGTCTCGCAAATAGTATTATACAACGCTGAAGAAACATGTGC
ATTTGGCCCAGGTTGCAACCTTCTCAATTGCACATTATACAACATTTTTT
TCGTGCTTGGCTCGAGTTTGTGTCCAGGATCAAGTTCCACCATTCCGTCC
CAACGTAGACGCAACATGCTGATACATGGTTGATCATTGTTGCACTTGGT
GTTTTGGCCCCGGTTTTGATTCTCGAACGTACGTTCGTGCTCCTTCCGAT
TCCCTTCTTGCTTTCCGCGTCGAATTCTTTCGTACCAGCCGGAGGGTGAC
TTCTTCTCCGAGTACGACACACGTAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2315:1990..3719-

>mRNA_H-paniculata_contig2315.6230.1 ID=mRNA_H-paniculata_contig2315.6230.1|Name=mRNA_H-paniculata_contig2315.6230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig2315:1990..3719- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGTCATCGGATTCCTGATGGTGTGCCTCACGGCCGTGAGTGGGTT
CATGGTACCTTCGCAGCGCGTTGTGACGCCCACACGGTCCGTAGTGCGTT
CGTCGTCGTCTCCTGTGCACATGGGCCTGAATGAGGACTTCCAGAAAGCG
GCTGCTACGGCCTCAGTCGCGGTGCTCACGGCGGCACCCGCCATCGCAAC
CGAGGGGACCGGGGAGATGAAGGTCATCGGATTCCTGATGGTGTGCCTCA
CGGCCGTGAGTGGGTTCATGGTACCTTCGCAGCGCGTTGTGACGCCCACA
CGGTCCGTAGTGCGTTCGTCGTCGTCTCCTGTGCACATGGGCCTGAATGA
GGACTTCCAGAAAGCGGCTGCTACGGCCTCAGTCGCGGTGCTCACGGCGG
CACCCGCCATCGCAACCGAGGGGACCGGGGAGCCTTTGGGATTTAACGAG
GGGAAGGCTGTCATCGTGCCTCTGCTTGTTCTTCTCGCTATCAACCTCTT
GTTCAACAACTGGGCAAAGGACCAGCCTTTGGGATTTAACGAGGGGAAGG
CTGTCATCGTGCCTCTGCTTGTTCTTCTCGCTATCAACCTCTTGTTCAAC
AACTGGGCAAAGGACCAGCCGGAGGGTGACTTCTTCTCCGAGTACGACAC
ACGTAAATAACCGGAGGGTGACTTCTTCTCCGAGTACGACACACGTAAAT
AA
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